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2013-03-22	Teemu Murtola	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2013-03-08	Teemu Murtola	Better test assertions for exceptions.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Improve enum option interface.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	More flexible handling of enum option descriptions.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Fix copyright notices for new C++ code.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Update my e-mail address on author lines.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Merge "Uncrustify template.cpp and selection.cpp."	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2013-02-25	Teemu Murtola	Uncrustify template.cpp and selection.cpp.	commit \| commitdiff \| tree
2013-02-13	Teemu Murtola	Fix velocity and force evaluation for empty selections.	commit \| commitdiff \| tree
2013-02-13	Teemu Murtola	Change ConstArrayRef constructor argument order.	commit \| commitdiff \| tree
2013-02-13	Teemu Murtola	Add continuous array accessors for selection data.	commit \| commitdiff \| tree
2013-02-13	Teemu Murtola	Add tests for selection mass evaluation and fix it.	commit \| commitdiff \| tree
2013-02-10	Teemu Murtola	Manual reformatting in preparation for uncrustify.	commit \| commitdiff \| tree
2013-01-13	Teemu Murtola	Remove unused bfunc.h.	commit \| commitdiff \| tree
2013-01-04	Teemu Murtola	Merge "Minor fixes to g_angle help description." into...	commit \| commitdiff \| tree
2013-01-04	Teemu Murtola	Merge "add an option to not build the template" into...	commit \| commitdiff \| tree
2013-01-04	Teemu Murtola	Merge "Add missing defines to PKG_CFLAGS" into release-4-6	commit \| commitdiff \| tree
2013-01-04	Teemu Murtola	Merge "Fixed error message for zwitterion residues...	commit \| commitdiff \| tree
2012-12-30	Teemu Murtola	Remove non-functional PowerPC invsqrt.	commit \| commitdiff \| tree
2012-12-30	Teemu Murtola	Remove superfluous memory allocation.	commit \| commitdiff \| tree
2012-12-21	Teemu Murtola	Make gmx_cpuid.h self-standing.	commit \| commitdiff \| tree
2012-12-21	Teemu Murtola	Remove non-functional compiler override for MacOSX.	commit \| commitdiff \| tree
2012-12-17	Teemu Murtola	Fix license text printed by programs.	commit \| commitdiff \| tree
2012-12-10	Teemu Murtola	Rename g_ana to gmx.	commit \| commitdiff \| tree
2012-12-10	Teemu Murtola	Replace most tools with symlinks to g_ana.	commit \| commitdiff \| tree
2012-12-10	Teemu Murtola	Wrapper module to add old binaries into g_ana.	commit \| commitdiff \| tree
2012-12-06	Teemu Murtola	Fix build of template and other external code.	commit \| commitdiff \| tree
2012-11-25	Teemu Murtola	Extended build information output and reference build...	commit \| commitdiff \| tree
2012-11-10	Teemu Murtola	Option to create symlinks to g_ana.	commit \| commitdiff \| tree
2012-11-10	Teemu Murtola	Always use relative install paths.	commit \| commitdiff \| tree
2012-11-10	Teemu Murtola	Remove obsolete GMX_THREAD_SHM_FDECOMP.	commit \| commitdiff \| tree
2012-11-08	Teemu Murtola	Include Gromacs files with double quotes in C++ code.	commit \| commitdiff \| tree
2012-11-08	Teemu Murtola	Remove unnecessary config.h includes in C++ code.	commit \| commitdiff \| tree
2012-10-27	Teemu Murtola	Clean up git version generation.	commit \| commitdiff \| tree
2012-10-16	Teemu Murtola	Script for analyzing include dependencies.	commit \| commitdiff \| tree
2012-10-15	Teemu Murtola	Clean up g_ana angle implementation.	commit \| commitdiff \| tree
2012-10-15	Teemu Murtola	Extract Doxygen docs for anonymous namespaces.	commit \| commitdiff \| tree
2012-10-15	Teemu Murtola	Fix most warnings with Doxygen 1.8.1.1.	commit \| commitdiff \| tree
2012-10-15	Teemu Murtola	Remove explicit end-of-array markers from tests.	commit \| commitdiff \| tree
2012-10-04	Teemu Murtola	Unit tests for insolidangle selections.	commit \| commitdiff \| tree
2012-10-04	Teemu Murtola	Add occupied fraction and PDB output to g_ana select.	commit \| commitdiff \| tree
2012-10-04	Teemu Murtola	Update valgrind suppressions after mem leak fixes.	commit \| commitdiff \| tree
2012-10-04	Teemu Murtola	Support C++11 <regex> as alternative to POSIX regex.h.	commit \| commitdiff \| tree
2012-10-04	Teemu Murtola	Encapsulate regexp use in selections.	commit \| commitdiff \| tree
2012-10-03	Teemu Murtola	More selection unit tests for variables and fixes.	commit \| commitdiff \| tree
2012-10-02	Teemu Murtola	More thorough unit tests for plus/merge selections.	commit \| commitdiff \| tree
2012-09-28	Teemu Murtola	Remove unused code.	commit \| commitdiff \| tree
2012-09-27	Teemu Murtola	Merge "Fix insolidangle selections near poles." into...	commit \| commitdiff \| tree
2012-09-25	Teemu Murtola	Fix a few memory leaks in C++ code.	commit \| commitdiff \| tree
2012-09-25	Teemu Murtola	Fine-tuning for FileNameOption.	commit \| commitdiff \| tree
2012-09-24	Teemu Murtola	Add pdbname selection keyword.	commit \| commitdiff \| tree
2012-09-24	Teemu Murtola	Add pdbname selection keyword.	commit \| commitdiff \| tree
2012-09-18	Teemu Murtola	Fixes for numeric and position selection variables.	commit \| commitdiff \| tree
2012-09-18	Teemu Murtola	Add some valgrind suppressions for Mac.	commit \| commitdiff \| tree
2012-09-16	Teemu Murtola	Fix insolidangle selections near poles.	commit \| commitdiff \| tree
2012-09-13	Teemu Murtola	Fix some memory leaks.	commit \| commitdiff \| tree
2012-09-10	Teemu Murtola	Merge optioninfo.h to option.h.	commit \| commitdiff \| tree
2012-09-07	Teemu Murtola	Print more information on exceptions.	commit \| commitdiff \| tree
2012-09-07	Teemu Murtola	Better error messages for SelectionFileOption.	commit \| commitdiff \| tree
2012-09-07	Teemu Murtola	Better context information handling for exceptions.	commit \| commitdiff \| tree
2012-09-07	Teemu Murtola	Restructure fatal error formatting.	commit \| commitdiff \| tree
2012-09-07	Teemu Murtola	More features for TextLineWrapper.	commit \| commitdiff \| tree
2012-09-04	Teemu Murtola	Allow 'atomname' and 'atomtype' in selections.	commit \| commitdiff \| tree
2012-08-31	Teemu Murtola	Reorganize CommandLineHelpWriter implementation.	commit \| commitdiff \| tree
2012-08-31	Teemu Murtola	Remove obsolete .gitignore entries.	commit \| commitdiff \| tree
2012-08-30	Teemu Murtola	More generic way to obtain OptionInfo for options.	commit \| commitdiff \| tree
2012-08-30	Teemu Murtola	Fix SelectionParserParameter move constructor problem.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Enable C++ use in selection methods.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Add syntax to force selection string matching mode.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Remove remaining GMX_ERROR uses.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Fix internal error with selection "resname help".	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Handle SelectionParserParameter as a value type.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	C++ classes for selection parser values.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	C++ classes for selection parser parameters.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	C++ classes for selection parser symbol table.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Rationalize selection element name handling.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Moved selection parser helpers into separate file.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Use smart pointers to manage the selection tree.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Remove most uses of t_selelem::refcount.	commit \| commitdiff \| tree
2012-08-28	Teemu Murtola	Added a sfree_guard for exception safety.	commit \| commitdiff \| tree
2012-08-08	Teemu Murtola	Improve the build system for gmx_header_config.h.	commit \| commitdiff \| tree
2012-08-05	Teemu Murtola	Improve Doxygen output layout.	commit \| commitdiff \| tree
2012-08-05	Teemu Murtola	Clarify TestFileManager naming and comments.	commit \| commitdiff \| tree
2012-07-29	Teemu Murtola	Reorganize Doxygen build.	commit \| commitdiff \| tree
2012-07-27	Teemu Murtola	Fix clang 3.2 warnings.	commit \| commitdiff \| tree
2012-07-27	Teemu Murtola	Fix a few doxygen warnings.	commit \| commitdiff \| tree
2012-07-24	Teemu Murtola	Merge remote-tracking branch 'gerrit/release-4-6'	commit \| commitdiff \| tree
2012-07-15	Teemu Murtola	Draft support for multiple help output formats.	commit \| commitdiff \| tree
2012-07-15	Teemu Murtola	Removed commas from gmx_hbond OpenMP constructs.	commit \| commitdiff \| tree
2012-07-11	Teemu Murtola	Improve option initialization in traj. analysis.	commit \| commitdiff \| tree
2012-07-09	Teemu Murtola	Fix memory error with complex boolean selections.	commit \| commitdiff \| tree
2012-07-08	Teemu Murtola	Extension completion for FileNameOption.	commit \| commitdiff \| tree
2012-07-06	Teemu Murtola	Better invalid option value handling.	commit \| commitdiff \| tree
2012-07-06	Teemu Murtola	Remove remaining underscore-prefixed C++ symbols.	commit \| commitdiff \| tree
2012-07-06	Teemu Murtola	Merge "Test framework for TrajectoryAnalysisModules."	commit \| commitdiff \| tree
2012-07-06	Teemu Murtola	Test framework for TrajectoryAnalysisModules.	commit \| commitdiff \| tree
2012-07-05	Teemu Murtola	Extract doxygen documentation for static symbols.	commit \| commitdiff \| tree
2012-07-04	Teemu Murtola	Fix most doxygen warnings.	commit \| commitdiff \| tree
2012-07-03	Teemu Murtola	Improve ProgramInfo and use it everywhere.	commit \| commitdiff \| tree
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