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2019-08-22	Mark Abraham	Merge branch release-2019	commit \| commitdiff \| tree
2019-08-22	Mark Abraham	Improve clang-analyzer build time	commit \| commitdiff \| tree
2019-08-22	M. Eric Irrgang	C++ code and Python bindings for TPR parameter read...	commit \| commitdiff \| tree
2019-08-22	Berk Hess	Fix perturbed bonded bug	commit \| commitdiff \| tree
2019-08-21	M. Eric Irrgang	Enable GMXAPI by default.	commit \| commitdiff \| tree
2019-08-20	Berk Hess	Merge two dihedral functions	commit \| commitdiff \| tree
2019-08-20	Berk Hess	Use shiftForces in ForceOuputs	commit \| commitdiff \| tree
2019-08-20	Erik Lindahl	Avoid using GMX_SIMD macros to detect _mm_pause()	commit \| commitdiff \| tree
2019-08-20	Mark Abraham	Fix issues for clang-analyzer-8	commit \| commitdiff \| tree
2019-08-20	Berk Hess	Make bonded virial computation conditional	commit \| commitdiff \| tree
2019-08-19	Szilárd Páll	Switch to ARM HPC toolchain v19.2 in post-submit	commit \| commitdiff \| tree
2019-08-19	Mark Abraham	Modernize t_matrix, t_mapping, t_rgb	commit \| commitdiff \| tree
2019-08-19	Mark Abraham	Modernize t_psdata	commit \| commitdiff \| tree
2019-08-19	Szilárd Páll	Work around clang CUDA device code codegen bug	commit \| commitdiff \| tree
2019-08-16	Szilárd Páll	Fix sim_util.cpp copyright header	commit \| commitdiff \| tree
2019-08-16	Mark Abraham	Update testing matrices and fix warnings	commit \| commitdiff \| tree
2019-08-16	Mark Abraham	Stop nbnxm/grid.h depending on SIMD module	commit \| commitdiff \| tree
2019-08-15	Szilárd Páll	Fix OpenCL gather reduction	commit \| commitdiff \| tree
2019-08-14	Christian Blau	Info class to name and generate the densityfitting...	commit \| commitdiff \| tree
2019-08-14	Mark Abraham	Fix vv integrators	commit \| commitdiff \| tree
2019-08-14	M. Eric Irrgang	Add initial .clang-format file.	commit \| commitdiff \| tree
2019-08-13	Mark Abraham	Fix icc 19 codegen issue	commit \| commitdiff \| tree
2019-08-12	M. Eric Irrgang	Introduce Context requirement.	commit \| commitdiff \| tree
2019-08-12	Mark Abraham	Quiet warning	commit \| commitdiff \| tree
2019-08-12	Mark Abraham	Fix ocl_kernel target	commit \| commitdiff \| tree
2019-08-12	Pascal Merz	Use new setenv function for energyoutput test	commit \| commitdiff \| tree
2019-08-12	M. Eric Irrgang	Separate out some abstract base classes.	commit \| commitdiff \| tree
2019-08-09	Artem Zhmurov	Prepare Update and Constraints for Domain Decomposition	commit \| commitdiff \| tree
2019-08-09	Artem Zhmurov	Refactoring of the SETTLE tests	commit \| commitdiff \| tree
2019-08-09	Berk Hess	SIMD acceleration for F_FOURDIHS and F_PIDIHS	commit \| commitdiff \| tree
2019-08-08	Mark Abraham	Fix estimate of the size of a j list	commit \| commitdiff \| tree
2019-08-08	M. Eric Irrgang	Add gmxapi_pytest custom target to CMake `check` target.	commit \| commitdiff \| tree
2019-08-08	M. Eric Irrgang	Allow gmxapi Python package tests to be run from GROMACS...	commit \| commitdiff \| tree
2019-08-08	Christian Blau	Harmonize mrc density format extents with rest of code.	commit \| commitdiff \| tree
2019-08-08	M. Eric Irrgang	Reenable gtest_main target.	commit \| commitdiff \| tree
2019-08-08	Mark Abraham	Stop testing ICC on Windows	commit \| commitdiff \| tree
2019-08-08	Artem Zhmurov	Refactor Leap-Frog tests and connect them to CPU version	commit \| commitdiff \| tree
2019-08-07	M. Eric Irrgang	Use gmock and gtest targets from googletest-release...	commit \| commitdiff \| tree
2019-08-05	Pascal Merz	Move ownership of kinetic energy object to ISimulator	commit \| commitdiff \| tree
2019-08-05	Pascal Merz	Added Simulator comparison test	commit \| commitdiff \| tree
2019-08-05	Mark Abraham	Remove libgromacs_generated contributions from FindCUDA...	commit \| commitdiff \| tree
2019-08-02	yongwangCPH	Solve issue with demux.pl	commit \| commitdiff \| tree
2019-08-01	Berk Hess	Remove a pointer in t_forcerec	commit \| commitdiff \| tree
2019-08-01	Berk Hess	Fix nbnxm GPU memory reservation issue	commit \| commitdiff \| tree
2019-08-01	Mark Abraham	Manage compiler flags and some include options per...	commit \| commitdiff \| tree
2019-08-01	Mark Abraham	Improve use of object libraries in libgromacs	commit \| commitdiff \| tree
2019-08-01	Mark Abraham	Merge "Merge release-2019 into master"	commit \| commitdiff \| tree
2019-07-31	Berk Hess	Add grompp warning with use of GROMOS FF	commit \| commitdiff \| tree
2019-07-31	Artem Zhmurov	Introduce function that checks if the computations...	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Fixes for F buffer ops change	commit \| commitdiff \| tree
2019-07-31	Berk Hess	Remove need for GROMOS FF in test	commit \| commitdiff \| tree
2019-07-31	Pascal Merz	Rename Simulator to LegacySimulator	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Move cycle counting into the GPU bonded module	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Report when development feature flags are used	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Move end of step GPU task launches to a function	commit \| commitdiff \| tree
2019-07-30	Paul Bauer	Add wrapper for outputadapter methods	commit \| commitdiff \| tree
2019-07-28	Berk Hess	Convert Ewald correction tables to C++	commit \| commitdiff \| tree
2019-07-26	Berk Hess	Add default initialization to interaction_const_t	commit \| commitdiff \| tree
2019-07-26	Christian Blau	Fix failing check-source target on python3.6	commit \| commitdiff \| tree
2019-07-25	Berk Hess	Split canDetectGpus()	commit \| commitdiff \| tree
2019-07-25	Szilárd Páll	Only stop the CUDA profiler if there are devices	commit \| commitdiff \| tree
2019-07-24	Paul Bauer	Fix doxygen in coordianteio files	commit \| commitdiff \| tree
2019-07-24	Paul Bauer	Add outputadapters (3/3)	commit \| commitdiff \| tree
2019-07-24	M. Eric Irrgang	Fix gmxapi notebook image and sample_restraint docker...	commit \| commitdiff \| tree
2019-07-24	M. Eric Irrgang	Improve gmxapi docker testing environment.	commit \| commitdiff \| tree
2019-07-23	M. Eric Irrgang	Don't install sample restraint package by default.	commit \| commitdiff \| tree
2019-07-23	Kevin Boyd	Modernize syntax of enable_if and traits to use _t...	commit \| commitdiff \| tree
2019-07-09	David van der Spoel	Fixed small bug in gmx anaeig	commit \| commitdiff \| tree
2019-07-09	M. Eric Irrgang	Incorporate sample_restraint repository.	commit \| commitdiff \| tree
2019-07-09	M. Eric Irrgang	Begin CMake front-end for Python packaging machinery.	commit \| commitdiff \| tree
2019-07-08	Szilárd Páll	Eliminate a use of double precision in the GPU bonded...	commit \| commitdiff \| tree
2019-07-08	Berk Hess	Store nbnxm gridSet data in GridSetData	commit \| commitdiff \| tree
2019-07-05	Mark Abraham	Modernize FindHwloc.cmake	commit \| commitdiff \| tree
2019-07-05	M. Eric Irrgang	Python bindings for mdrun.	commit \| commitdiff \| tree
2019-07-04	Mark Abraham	Further clang-tidy-7 fix	commit \| commitdiff \| tree
2019-07-03	Artem Zhmurov	Combine CUDA Leap-Frog, LINCS and SETTLE. II.	commit \| commitdiff \| tree
2019-07-03	Kevin Boyd	Updates to math/vec.h	commit \| commitdiff \| tree
2019-07-02	Mark Abraham	Clarify wording of release notes	commit \| commitdiff \| tree
2019-07-02	Berk Hess	Re-enable affinity diagonostics with MPI	commit \| commitdiff \| tree
2019-07-02	Kevin Boyd	Add function for calculating 3x3 matrix determinant	commit \| commitdiff \| tree
2019-07-02	Kevin Boyd	Remove references to ecutsGROUP	commit \| commitdiff \| tree
2019-07-01	Pascal Merz	Fix module detection for physical validation	commit \| commitdiff \| tree
2019-07-01	Szilárd Páll	Refactor tracking of GPU short-range work/skipping	commit \| commitdiff \| tree
2019-07-01	Berk Hess	Fix MPI deadlock in affinity setting	commit \| commitdiff \| tree
2019-07-01	M. Eric Irrgang	gmxapi Python package documentation infrastructure.	commit \| commitdiff \| tree
2019-06-30	Szilárd Páll	Create dedicated subcounter for nonbonded FEP	commit \| commitdiff \| tree
2019-06-30	Kevin Boyd	Remove group scheme checks from runner	commit \| commitdiff \| tree
2019-06-30	Magnus Lundborg	Cleaning up the GPU bonded kernel	commit \| commitdiff \| tree
2019-06-20	Paul Bauer	Use ISerializer for TPR file IO	commit \| commitdiff \| tree
2019-06-20	Berk Hess	Template free-energy kernel on soft-core	commit \| commitdiff \| tree
2019-06-20	Christian Blau	Add BasicVector scaling, max, min and toIvec	commit \| commitdiff \| tree
2019-06-19	Szilárd Páll	Disable PME GPU on Apple OpenCL	commit \| commitdiff \| tree
2019-06-19	Berk Hess	Refactor PME atom handling	commit \| commitdiff \| tree
2019-06-19	Paul Bauer	Split tpr header reading reading from tpr body	commit \| commitdiff \| tree
2019-06-19	Berk Hess	Removed unused code paths in the NB FE kernel	commit \| commitdiff \| tree
2019-06-18	Paul Bauer	Fix gmx dump	commit \| commitdiff \| tree
2019-06-18	Mark Abraham	Move code handling mdrun -gpu_id to taskassignment...	commit \| commitdiff \| tree
2019-06-18	Berk Hess	Make forcerec const in dispatchNonbondedKernel()	commit \| commitdiff \| tree
2019-06-18	Christian Blau	Mrc format header to lattice coordinate transform	commit \| commitdiff \| tree
2019-06-18	Christian Blau	Density similarity measure and gradient	commit \| commitdiff \| tree
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