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2012-10-31	Szilard Pall	fix internal/external OpenMP thread affinity clash	commit \| commitdiff \| tree
2012-10-30	Roland Schulz	Fix that no OpenMP flags are used with GMX_OPENMP=no	commit \| commitdiff \| tree
2012-10-26	Roland Schulz	Fix usage of CMAKE_REQUIRED_*	commit \| commitdiff \| tree
2012-10-26	Roland Schulz	Merge "fixed incorrect PME load balancing limitation...	commit \| commitdiff \| tree
2012-10-26	Christoph Junghans	Merge "enable GMX_PREFER_STATIC_LIBS CMake option on...	commit \| commitdiff \| tree
2012-10-26	Christoph Junghans	Merge "fix false positive gcc 4.7 warning in libxdrf...	commit \| commitdiff \| tree
2012-10-26	Roland Schulz	Merge "set the default for nstdhdl to 100" into release-4-6	commit \| commitdiff \| tree
2012-10-25	Roland Schulz	Merge "fix CUDA non-bonded kernel pointer assignment...	commit \| commitdiff \| tree
2012-10-24	Szilárd Páll	enable GMX_PREFER_STATIC_LIBS CMake option on Mac OS X	commit \| commitdiff \| tree
2012-10-23	Berk Hess	fixed bondfree.c thread safety with free energy	commit \| commitdiff \| tree
2012-10-23	Roland Schulz	Merge "moved part of nbnxn_search.c to nbnxn_atomdata...	commit \| commitdiff \| tree
2012-10-23	Roland Schulz	Merge "fixed incorrect LJ energy with GPU and PME load...	commit \| commitdiff \| tree
2012-10-23	Berk Hess	moved part of nbnxn_search.c to nbnxn_atomdata.c	commit \| commitdiff \| tree
2012-10-23	Berk Hess	fixed incorrect LJ energy with GPU and PME load balancing	commit \| commitdiff \| tree
2012-10-23	Roland Schulz	Merge "added OpenMP parallelization for virtual sites...	commit \| commitdiff \| tree
2012-10-22	Berk Hess	added OpenMP parallelization for virtual sites	commit \| commitdiff \| tree
2012-10-22	Szilard Pall	fix CUDA non-bonded kernel pointer assignment	commit \| commitdiff \| tree
2012-10-22	Roland Schulz	Fix minor OpenMP issue for md-vv update	commit \| commitdiff \| tree
2012-10-19	Roland Schulz	Merge "[tools] Allow g_dist to use default index group...	commit \| commitdiff \| tree
2012-10-19	Kasson	Merge "renamed constraint variables rmdr to vir_r_m_dr...	commit \| commitdiff \| tree
2012-10-19	Roland Schulz	Merge "renamed pme_switch... to pme_loadbal..." into...	commit \| commitdiff \| tree
2012-10-18	Roland Schulz	Merge "Added thread affinity API to thread_mpi." into...	commit \| commitdiff \| tree
2012-10-18	Berk Hess	added OpenMP parallelization to LINCS projection	commit \| commitdiff \| tree
2012-10-17	Kasson	Merge "Make Gromacs compile without C++ compiler" into...	commit \| commitdiff \| tree
2012-10-16	Roland Schulz	Merge "made pair-search with GPU 20% faster" into release-4-6	commit \| commitdiff \| tree
2012-10-13	David van der Spoel	Merge "Fixing issues with replica exchange" into release-4-6	commit \| commitdiff \| tree
2012-10-12	Berk Hess	Merge "Fix illegal barrier in worksharing" into release-4-6	commit \| commitdiff \| tree
2012-10-04	Berk Hess	fixed backward compatibility of tpr files with dihres	commit \| commitdiff \| tree
2012-10-03	Sander Pronk	Added two #defines that state the gromacs API + program...	commit \| commitdiff \| tree
2012-09-27	Christoph Junghans	Merge "Fixed an off-by-one error in atom counting in...	commit \| commitdiff \| tree
2012-09-27	Teemu Murtola	Merge "Fix insolidangle selections near poles." into...	commit \| commitdiff \| tree
2012-09-25	Christoph Junghans	Merge "Fix REMD use of gmx_large_int_t for #steps variable...	commit \| commitdiff \| tree
2012-09-24	Kasson	Merge "Fixed segfault with FE code for older tpr files...	commit \| commitdiff \| tree
2012-09-15	Kasson	Merge "Fix some memory leaks." into release-4-5-patches	commit \| commitdiff \| tree
2012-09-15	David van der Spoel	Merge "Adapted NMR related data to new pdb format....	commit \| commitdiff \| tree
2012-09-14	Christoph Junghans	Merge "fixed recent bug with grompp check for P-R P...	commit \| commitdiff \| tree
2012-09-12	Mark Abraham	Merge "Don't fail linking if man page building fails...	commit \| commitdiff \| tree
2012-09-10	Roland Schulz	Merge "Update use of CPack components and add install...	commit \| commitdiff \| tree
2012-09-07	Christoph Junghans	Merge "Fix VMD plugins on Windows" into release-4-6	commit \| commitdiff \| tree
2012-09-07	Christoph Junghans	Merge "Check that gmx_detectcpu runs correctly" into...	commit \| commitdiff \| tree
2012-09-06	Roland Schulz	Merge "Fixed .g96 trajectory reading." into release...	commit \| commitdiff \| tree
2012-09-04	Christoph Junghans	Merge "Fixes too many backup files for *.nroff files...	commit \| commitdiff \| tree
2012-09-03	Kasson	Merge "Document correct comm_mode option" into release...	commit \| commitdiff \| tree
2012-09-03	Kasson	Merge "Improved pdb2gmx output" into release-4-5-patches	commit \| commitdiff \| tree
2012-08-20	Christoph Junghans	Merge "Fixing of things associated with aminoacid.rtp...	commit \| commitdiff \| tree
2012-08-20	Christoph Junghans	Merge "Clean up some variable naming for eigensolving...	commit \| commitdiff \| tree
2012-08-20	Christoph Junghans	Merge "Fix coordinate is zero check in gmxcheck" into...	commit \| commitdiff \| tree
2012-08-20	Christoph Junghans	Merge "Explicitly noted an issue with use of genbox...	commit \| commitdiff \| tree
2012-08-18	Roland Schulz	Merge "fix AdResS and long-range electrostatics warning...	commit \| commitdiff \| tree
2012-08-11	Mark Abraham	Clean up some variable naming for eigensolving	commit \| commitdiff \| tree
2012-08-11	Roland Schulz	Make GCC OpenMP libraries static if GMX_PREFER_STATIC_OPENMP	commit \| commitdiff \| tree
2012-08-11	Roland Schulz	Guarantee OpenMP flags for linker and make them user...	commit \| commitdiff \| tree
2012-08-07	Christoph Junghans	Merge "fixed incorrect TPI results with dynamic box...	commit \| commitdiff \| tree
2012-08-06	Christoph Junghans	Merge "Added comment in get_structure about which structures...	commit \| commitdiff \| tree
2012-08-04	Roland Schulz	Merge "Fixed segv in essential dynamics module" into...	commit \| commitdiff \| tree
2012-07-31	Christoph Junghans	Merge "Clarified reasons for termination of EM" into...	commit \| commitdiff \| tree
2012-07-26	Roland Schulz	Fix that VMD version check was performed for binary...	commit \| commitdiff \| tree
2012-07-25	Roland Schulz	Merge "cmake: allow switch between single and double...	commit \| commitdiff \| tree
2012-07-25	Roland Schulz	Merge "fix a segfault in sse_mask_init" into release-4-6	commit \| commitdiff \| tree
2012-07-16	Christoph Junghans	Merge "Removed commas from gmx_hbond OpenMP constructs...	commit \| commitdiff \| tree
2012-07-16	Christoph Junghans	Merge "Enforced rotation: PBC/restart fix" into release-4-6	commit \| commitdiff \| tree
2012-07-15	Roland Schulz	Take first description if programs.txt has more than...	commit \| commitdiff \| tree
2012-07-15	David van der Spoel	Merge "Autogenerate gromacs.7 from programs.txt" into...	commit \| commitdiff \| tree
2012-07-15	Roland Schulz	Adding missing entries in programs.txt	commit \| commitdiff \| tree
2012-07-09	Christoph Junghans	Merge "Fixed bug in sfactor.c that makes g_rdf -sq...	commit \| commitdiff \| tree
2012-07-06	Carsten Kutzner	Enforced rotation: PBC/restart fix	commit \| commitdiff \| tree
2012-07-06	Roland Schulz	Don't prevent GMX_PREFER_STATIC_LIBS with BUILD_SHARED_LIBS	commit \| commitdiff \| tree
2012-07-05	Christoph Junghans	Merge "Don't rerun checks and be quiet 2nd time cmake...	commit \| commitdiff \| tree
2012-07-05	Christoph Junghans	Merge "Allow also FindMPI for cmake<2.8.5" into release-4-6	commit \| commitdiff \| tree
2012-07-05	Christoph Junghans	Merge "Finalized and extended Szilard's openMP cleanup...	commit \| commitdiff \| tree
2012-07-04	Roland Schulz	Merge "Add FindGROMACS.cmake to template's CMakeLists...	commit \| commitdiff \| tree
2012-07-04	Roland Schulz	Merge "Fixed bug in free energy calculation for Morse...	commit \| commitdiff \| tree
2012-07-04	Berk Hess	set default for rcoulomb, rvdw and rlist to -1	commit \| commitdiff \| tree
2012-07-03	Szilárd Páll	Merge "Minor formatting and consistency changes to...	commit \| commitdiff \| tree
2012-06-29	Sebastian Fritsch	Merge "Fixed adress kernel for double precision" into...	commit \| commitdiff \| tree
2012-06-28	Christoph Junghans	Merge "Fix MPI build for MPI library without mpi wrapper...	commit \| commitdiff \| tree
2012-06-27	Szilard Pall	fixes typo gmx_omp introduced by 697bcdc	commit \| commitdiff \| tree
2012-06-26	Roland Schulz	Merge "Fix gmx_fatal for serial compilation" into release-4-6	commit \| commitdiff \| tree
2012-06-24	Christoph Junghans	Merge "Remove MPI define for FAH" into release-4-6	commit \| commitdiff \| tree
2012-06-24	Michael Shirts	Merge "Fix mdp_opt formatting of expanded ensemble...	commit \| commitdiff \| tree
2012-06-23	Roland Schulz	Fix illegal usage of MPI_Comm_create	commit \| commitdiff \| tree
2012-06-22	Christoph Junghans	Merge "Simple patch for openmm_wrapper.cpp" into release-4-6	commit \| commitdiff \| tree
2012-06-20	Roland Schulz	Fix gmx_fatal for serial compilation	commit \| commitdiff \| tree
2012-06-19	Mark Abraham	Merge "Fixes #882 - looping bug in trxio.c" into release...	commit \| commitdiff \| tree
2012-06-19	Christoph Junghans	Merge "Quiet linker on BlueGene" into release-4-5-patches	commit \| commitdiff \| tree
2012-06-18	Christoph Junghans	Merge "Fix g_lie counting last frame twice" into release...	commit \| commitdiff \| tree
2012-06-18	Martin Hoefling	gmx_dyecoupl: check selected groups from user	commit \| commitdiff \| tree
2012-06-16	David van der Spoel	Fixes #882 - looping bug in trxio.c	commit \| commitdiff \| tree
2012-06-15	Erik Marklund	Makes g_hbond -contact work	commit \| commitdiff \| tree
2012-06-15	Christoph Junghans	Merge "Work around failure of endianness testing on...	commit \| commitdiff \| tree
2012-06-14	Roland Schulz	Merge "Made mdrun more verbose about PME split" into...	commit \| commitdiff \| tree
2012-06-11	Carsten Kutzner	Small fix for g_tune_pme	commit \| commitdiff \| tree
2012-06-08	Christoph Junghans	Merge "Added more suggested strategies to error message...	commit \| commitdiff \| tree
2012-06-01	Christoph Junghans	Merge "Use External BLAS/LAPACK by default" into release-4-6	commit \| commitdiff \| tree
2012-06-01	Christoph Junghans	Merge "Replace our fftpack version with Numpy's version...	commit \| commitdiff \| tree
2012-05-29	Sander Pronk	Removed dependency on windows.h through commrec.h,...	commit \| commitdiff \| tree
2012-05-29	Christoph Junghans	Merge "Revised g_tune_pme" into release-4-6	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Continuing to fix threading on Cygwin" into...	commit \| commitdiff \| tree
2012-05-27	David van der Spoel	Merge "added explicit sqrtf to the float version of...	commit \| commitdiff \| tree
2012-05-25	Roland Schulz	Make load_vmd_library static	commit \| commitdiff \| tree
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