biod.pnpi.spb.ru / alexxy / gromacs.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Remove excessive H2D and D2H coordinates copies when update is offloaded
2019-10-18 Artem ZhmurovRemove excessive H2D and D2H coordinates copies when...
commit | commitdiff | tree
2019-10-18 Artem ZhmurovRemove excessive H2D and D2H copies of velocities when...
commit | commitdiff | tree
2019-10-16 Artem ZhmurovLink GPU force producer and consumer tasks
 commit | commitdiff | tree
2019-10-15 Artem ZhmurovFix the single-GPU update-constraints
 commit | commitdiff | tree
2019-10-14 Artem ZhmurovAdd separate constructor to StatePropagatorDataGpu...
commit | commitdiff | tree
2019-10-12 Artem ZhmurovCentralize management of forces ready on GPU event
 commit | commitdiff | tree
2019-10-12 Artem ZhmurovChange copy mode to Async in PME only rank
 commit | commitdiff | tree
2019-10-12 Artem ZhmurovCentralize management of coordinates ready on GPU event
 commit | commitdiff | tree
2019-10-11 Artem ZhmurovWrong locality was used when ignoring the PME force...
commit | commitdiff | tree
2019-10-10 Artem ZhmurovAdd management for velocities and forces copy events...
commit | commitdiff | tree
2019-10-08 Artem ZhmurovFix for the recent nightly failure
 commit | commitdiff | tree
2019-10-07 Artem ZhmurovPass the GPU streams to StatePropagatorDataGpu constructor
 commit | commitdiff | tree
2019-10-07 Artem ZhmurovClean up the comments sections in Update-Constrain
 commit | commitdiff | tree
2019-10-07 Artem ZhmurovFix a bug in GPU halo exchange initialization
 commit | commitdiff | tree
2019-10-03 Artem ZhmurovFix the bug with offloading the PME-only ranks to GPU
 commit | commitdiff | tree
2019-10-02 Artem ZhmurovEliminate D2D copy in update constraints
 commit | commitdiff | tree
2019-10-01 Artem ZhmurovStatePropagatorDataGpu object to manage GPU forces...
commit | commitdiff | tree
2019-09-27 Artem ZhmurovSlight improvements to GPU update/constraints initialization
 commit | commitdiff | tree
2019-09-27 Artem ZhmurovIntroduce stream management to GPU Update-Constraints
 commit | commitdiff | tree
2019-09-22 Artem ZhmurovDisable GPU update/constraints when neither PME nor...
commit | commitdiff | tree
2019-09-12 Artem ZhmurovChange PaddedVector to PaddedHostVector for force CPU...
commit | commitdiff | tree
2019-09-11 Artem ZhmurovFix for the post-submit failure
 commit | commitdiff | tree
2019-09-11 Artem ZhmurovDecouple GPU force buffer management from buffer ops...
commit | commitdiff | tree
2019-09-11 Artem ZhmurovDecouple coordinates buffer management from buffer...
commit | commitdiff | tree
2019-09-11 Artem ZhmurovReorganize PME code:
 commit | commitdiff | tree
2019-09-10 Artem ZhmurovMaking DeviceBuffer availible in non-GPU builds
 commit | commitdiff | tree
2019-09-03 Artem ZhmurovAdd Parrinello-Rahman pressure coupling to CUDA Leap...
commit | commitdiff | tree
2019-08-26 Artem ZhmurovAdd temperature coupling to CUDA Leap-Frog integrator
 commit | commitdiff | tree
2019-08-25 Artem ZhmurovMake use of recent changes to prepareKernelArguments...
commit | commitdiff | tree
2019-08-25 Artem ZhmurovMisceleneous improvements to the Leap Frog tests
 commit | commitdiff | tree
2019-08-14 Artem ZhmurovBugFix: Zeroing the padded area of coordinates vectors...
commit | commitdiff | tree
2019-08-13 Artem ZhmurovMake use of reference data in integrator tests
 commit | commitdiff | tree
2019-08-13 Artem ZhmurovMake use of reference data in SETTLE tests
 commit | commitdiff | tree
2019-08-09 Artem ZhmurovPrepare Update and Constraints for Domain Decomposition
 commit | commitdiff | tree
2019-08-09 Artem ZhmurovRefactoring of the SETTLE tests
 commit | commitdiff | tree
2019-08-08 Artem ZhmurovRefactor Leap-Frog tests and connect them to CPU version
 commit | commitdiff | tree
2019-08-06 Artem ZhmurovFix for cmake lists in mdlib tests
 commit | commitdiff | tree
2019-08-06 Artem ZhmurovRemove PImpl scaffolding from CUDA version of Leap...
commit | commitdiff | tree
2019-07-31 Artem ZhmurovChange the file structure in constraints tests
 commit | commitdiff | tree
2019-07-31 Artem ZhmurovIntroduce function that checks if the computations...
commit | commitdiff | tree
2019-07-26 Artem ZhmurovRemove PImpl scaffolding from CUDA version of SETTLE
 commit | commitdiff | tree
2019-07-05 Artem ZhmurovRemove PImpl scaffolding from CUDA version of LINCS
 commit | commitdiff | tree
2019-07-04 Artem ZhmurovUse reallocateDeviceBuffer(...) in CUDA version of...
commit | commitdiff | tree
2019-07-03 Artem ZhmurovEarly exit for CUDA versions of SETTLE and LINCS
 commit | commitdiff | tree
2019-07-03 Artem ZhmurovMemory management fixes in CUDA version of LINCS
 commit | commitdiff | tree
2019-07-03 Artem ZhmurovCombine CUDA Leap-Frog, LINCS and SETTLE. II.
 commit | commitdiff | tree
2019-06-18 Artem ZhmurovCombine CUDA Leap-Frog, LINCS and SETTLE. I.
 commit | commitdiff | tree
2019-06-18 Artem ZhmurovBug fix: Constraints tests are not instantiated with...
commit | commitdiff | tree
2019-05-24 Artem ZhmurovClarify which of the main energy terms are printed.
 commit | commitdiff | tree
2019-05-24 Artem ZhmurovClarify the EnergyOutput III
 commit | commitdiff | tree
2019-05-24 Artem ZhmurovClarify the EnergyOutput II
 commit | commitdiff | tree
2019-05-13 Artem ZhmurovClarify the EnergyOutput I
 commit | commitdiff | tree
2019-05-12 Artem ZhmurovCUDA version of Leap-Frog integrator with basic tests
 commit | commitdiff | tree
2019-05-06 Artem ZhmurovFixing minor memory issues in MDLib
 commit | commitdiff | tree
2019-05-02 Artem ZhmurovUse test with parameters for EnergyOutput
 commit | commitdiff | tree
2019-04-30 Artem ZhmurovCUDA version of SETTLE algorithm with basic tests
 commit | commitdiff | tree
2019-04-29 Artem ZhmurovFix for the CUDA version of LINCS
 commit | commitdiff | tree
2019-04-28 Artem ZhmurovCUDA version of LINCS constraints.
 commit | commitdiff | tree
2019-04-25 Artem ZhmurovImprovements for energy output test.
 commit | commitdiff | tree
2019-04-16 Artem ZhmurovFix for the memory access error in constraints test.
 commit | commitdiff | tree
2019-04-04 Artem ZhmurovRemove isPressureCouplingStep(...)
 commit | commitdiff | tree
2019-04-04 Artem ZhmurovRemove isTemperatureCouplingStep(...)
 commit | commitdiff | tree
2019-03-28 Artem ZhmurovGPU naming conventions
 commit | commitdiff | tree
2019-03-25 Artem ZhmurovRemove unused headers
 commit | commitdiff | tree
2019-03-13 Artem ZhmurovBasic routines to handle periodic boundary.
 commit | commitdiff | tree
2019-02-21 Artem ZhmurovTest for LINCS and SHAKE constraints.
 commit | commitdiff | tree
2019-02-19 Artem ZhmurovPBC setup for GPU is moved into pbcutils.
 commit | commitdiff | tree
2019-02-13 Artem ZhmurovIgnore Visual Studio Code metadata.
 commit | commitdiff | tree
2018-12-27 Artem ZhmurovThe tests for LINCS and SHAKE constraints.
 commit | commitdiff | tree
Local GROMACS mirror with custom stuff