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2013-01-22	Mark Abraham	Merge "added missing cleanup of some nbnxn_cuda data...	commit \| commitdiff \| tree
2013-01-18	Mark Abraham	Set version info for 4.6.x release series	commit \| commitdiff \| tree
2013-01-18	Mark Abraham	New major release: 4.6	commit \| commitdiff \| tree
2013-01-18	Mark Abraham	Fixing copyright issues and code contributors Added Mark Abraham, Christoph Junghans and	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Updating the shell completion files	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Gromacs install guide updates.	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge "Remove unnecessary ICC flags affecting performance...	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge "improved CUDA kernel performance by pre-loading...	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge "Fix trjconv -sub with .trr files" into release...	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	BlueGene/Q installation notes	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge branch 'release-4-5-patches' into release-4-6	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge "Added mdp option 'calc-lambda-neighbors'." into...	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Fix trjconv -sub with .trr files	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Finally move OpenMM to contrib	commit \| commitdiff \| tree
2013-01-16	Mark Abraham	Quiet stderr output, particularly for multi-simulations	commit \| commitdiff \| tree
2013-01-15	Mark Abraham	Added check for valid wall_atomtype in .mdp	commit \| commitdiff \| tree
2013-01-15	Mark Abraham	Merge "Hid nbnxn kernel names behind a lookup function...	commit \| commitdiff \| tree
2013-01-15	Mark Abraham	Velocity-verlet integrators and v-rescale are broken	commit \| commitdiff \| tree
2013-01-14	Mark Abraham	Added fatal error for constraints + L-BFGS minimizer	commit \| commitdiff \| tree
2013-01-14	Mark Abraham	Hid nbnxn kernel names behind a lookup function	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Updated code checks with distance restraints	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Fixing trjconv -sub	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Noting that and why gmxdump -s -sys is broken	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Clarified some comments & warnings about thread pinning	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Manage BlueGene/Q configuration	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Re-organize BlueGene toolchain files	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Changed defaults for building shared libraries	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Merge "Added basic CPU topology information to cpuid...	commit \| commitdiff \| tree
2013-01-10	Mark Abraham	Merge "Revert default rlist/rvdw/rcoulomb to valid...	commit \| commitdiff \| tree
2013-01-10	Mark Abraham	Merge "fixed bug with Verlet + DD + bonded atom communicatio...	commit \| commitdiff \| tree
2013-01-10	Mark Abraham	Merge "Fixes SSE/AVX compilation under Windows" into...	commit \| commitdiff \| tree
2013-01-07	Mark Abraham	Reduce use of monolithic sets of compiler flags	commit \| commitdiff \| tree
2013-01-04	Mark Abraham	Set CMake module search path at a better time	commit \| commitdiff \| tree
2012-12-22	Mark Abraham	New beta release: 4.6-beta3	commit \| commitdiff \| tree
2012-12-19	Mark Abraham	Merge "Remove the rest of the fortran/power6 acceleration...	commit \| commitdiff \| tree
2012-12-19	Mark Abraham	Merge "Always build template program" into release-4-6	commit \| commitdiff \| tree
2012-12-19	Mark Abraham	Fix Reference build type	commit \| commitdiff \| tree
2012-12-19	Mark Abraham	Removed orphan file	commit \| commitdiff \| tree
2012-12-19	Mark Abraham	Avoid using undefined CMake variables	commit \| commitdiff \| tree
2012-12-13	Mark Abraham	Fix typo	commit \| commitdiff \| tree
2012-12-06	Mark Abraham	New beta release: 4.6-beta2	commit \| commitdiff \| tree
2012-12-06	Mark Abraham	Apply LGPL license to new files	commit \| commitdiff \| tree
2012-12-06	Mark Abraham	Updates for install guide	commit \| commitdiff \| tree
2012-12-06	Mark Abraham	Eliminate confusion from pkgconfig FFTW detection	commit \| commitdiff \| tree
2012-12-05	Mark Abraham	Merge "don't auto-set nvcc host compiler with cmake...	commit \| commitdiff \| tree
2012-12-05	Mark Abraham	Merge "Keep FindCUDA quiet when it is not useful" into...	commit \| commitdiff \| tree
2012-12-05	Mark Abraham	Merge "Remove TEST_TMPI_ATOMICS_ONLY" into release-4-6	commit \| commitdiff \| tree
2012-12-05	Mark Abraham	Merge "Re-apply -dev version name between beta 1 and...	commit \| commitdiff \| tree
2012-12-05	Mark Abraham	Merge "Fixed labelling of g_hbond plots" into release-4-6	commit \| commitdiff \| tree
2012-12-05	Mark Abraham	Re-apply -dev version name between beta 1 and beta 2	commit \| commitdiff \| tree
2012-12-05	Mark Abraham	Keep FindCUDA quiet when it is not useful	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Update copyright statements and change license to LGPL	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "Initial commit of new install guide" into release-4-6	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "Bump version to 4.6-beta1" into release-4-6	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Initial commit of new install guide	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Bump version to 4.6-beta1	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "Added .gitignore for kernel generation" into...	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "Double precision AVX-256 kernels" into release-4-6	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Added .gitignore for kernel generation	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "Fixing issue with GPU detection reporting" into...	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "Double precision AVX_128_FMA kernels" into release-4-6	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "Fix: pthread variables were overwritten by gmxManageG...	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Fixing issue with GPU detection reporting	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Refuse to build with clang 3.0	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Add a CMake warning about FFTW with --enable-avx	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "automation for setting GMX_GPU & cmake GPU detection...	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "SSE4.1 double precision kernels" into release-4-6	commit \| commitdiff \| tree
2012-11-29	Mark Abraham	Merge "Double precision SSE2 kernels" into release-4-6	commit \| commitdiff \| tree
2012-11-28	Mark Abraham	Merge "Ported back some AVX256 optimizations to SSE2...	commit \| commitdiff \| tree
2012-11-28	Mark Abraham	Merge "Fix Window-GPU build" into release-4-6	commit \| commitdiff \| tree
2012-11-28	Mark Abraham	Merge "extended nbnxn x86 SIMD kernel blendv support...	commit \| commitdiff \| tree
2012-11-26	Mark Abraham	Clean up some mathematical constants	commit \| commitdiff \| tree
2012-11-23	Mark Abraham	Updates to CMake treatment of OpenMP	commit \| commitdiff \| tree
2012-11-22	Mark Abraham	Speed up mdlib compilation by reordering file globs	commit \| commitdiff \| tree
2012-11-19	Mark Abraham	Merge "SSE4.1 single-precision kernels" into release-4-6	commit \| commitdiff \| tree
2012-11-19	Mark Abraham	Minor updates to CMake usage	commit \| commitdiff \| tree
2012-11-16	Mark Abraham	Added grompp warning	commit \| commitdiff \| tree
2012-11-10	Mark Abraham	Fix broken manual formatting	commit \| commitdiff \| tree
2012-11-08	Mark Abraham	Relocated logic of simple-vs-GPU Ewald table generation	commit \| commitdiff \| tree
2012-10-13	Mark Abraham	Fixed install-xxx functionality broken in 9628e27d	commit \| commitdiff \| tree
2012-09-24	Mark Abraham	Fix REMD use of gmx_large_int_t for #steps variable	commit \| commitdiff \| tree
2012-09-17	Mark Abraham	Made construction of parallel filenames less noisy	commit \| commitdiff \| tree
2012-09-12	Mark Abraham	Merge "Don't fail linking if man page building fails...	commit \| commitdiff \| tree
2012-09-10	Mark Abraham	Corrected REMD citation	commit \| commitdiff \| tree
2012-08-31	Mark Abraham	Update use of CPack components and add install targets	commit \| commitdiff \| tree
2012-08-31	Mark Abraham	Improved pdb2gmx output	commit \| commitdiff \| tree
2012-08-28	Mark Abraham	Document correct comm_mode option	commit \| commitdiff \| tree
2012-08-14	Mark Abraham	Explicitly noted an issue with use of genbox -maxsol	commit \| commitdiff \| tree
2012-08-14	Mark Abraham	Don't silently accept genbox -nmol without -ci	commit \| commitdiff \| tree
2012-08-11	Mark Abraham	Clean up some variable naming for eigensolving	commit \| commitdiff \| tree
2012-08-11	Mark Abraham	Fixing of things associated with aminoacid.rtp header	commit \| commitdiff \| tree
2012-08-10	Mark Abraham	Added TIP4P back into CHARMM27	commit \| commitdiff \| tree
2012-07-30	Mark Abraham	Clarified reasons for termination of EM	commit \| commitdiff \| tree
2012-07-24	Mark Abraham	Clean up of environment variables	commit \| commitdiff \| tree
2012-06-19	Mark Abraham	Merge "Fixes #882 - looping bug in trxio.c" into release...	commit \| commitdiff \| tree
2012-06-15	Mark Abraham	Quiet linker on BlueGene	commit \| commitdiff \| tree
2012-06-15	Mark Abraham	Fix g_lie counting last frame twice	commit \| commitdiff \| tree
2012-06-06	Mark Abraham	Work around failure of endianness testing on BlueGene	commit \| commitdiff \| tree
2012-06-06	Mark Abraham	Fix endian test functionality	commit \| commitdiff \| tree
2012-06-04	Mark Abraham	Added more suggested strategies to error message	commit \| commitdiff \| tree
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