BioD PNPI Git Repos - alexxy/gromacs.git/search

biod.pnpi.spb.ru / alexxy / gromacs.git / search

2013-06-30	Teemu Murtola	Script for running uncrustify for modified files.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	More flexible position input for nbsearch routines.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	C++-ify analysis nbsearch more.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	Remove C API for analysis neighborhoor search.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	Better concurrency support for analysis nbsearch.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	Fix analysis neighborhood search for 2D/screw PBC.	commit \| commitdiff \| tree
2013-06-27	Szilard Pall	Adapted clang-AMD-FMA workaround for both C and C++	commit \| commitdiff \| tree
2013-06-26	Roland Schulz	Remove hack to support old version tpr version 80	commit \| commitdiff \| tree
2013-06-24	Teemu Murtola	Clean up copyrite.*.	commit \| commitdiff \| tree
2013-06-24	Teemu Murtola	Move FFT routines to src/gromacs/fft/.	commit \| commitdiff \| tree
2013-06-24	Teemu Murtola	Restructure AnalysisData unit tests.	commit \| commitdiff \| tree
2013-06-24	Teemu Murtola	More flexible input data for analysisdata tests.	commit \| commitdiff \| tree
2013-06-17	Teemu Murtola	Add unit tests for selection index mapping.	commit \| commitdiff \| tree
2013-06-17	Teemu Murtola	Uniform initialization for analysisdata tests.	commit \| commitdiff \| tree
2013-06-17	Teemu Murtola	Separate topology handling in selection tests.	commit \| commitdiff \| tree
2013-06-14	Teemu Murtola	Improve reference data checks against same data.	commit \| commitdiff \| tree
2013-06-14	David van der Spoel	New analysis tool to compute the free volume and total...	commit \| commitdiff \| tree
2013-06-14	Berk Hess	fixed minor g_bar output issues	commit \| commitdiff \| tree
2013-06-13	Teemu Murtola	Added ability to use cppcheck from the command line.	commit \| commitdiff \| tree
2013-06-13	Mark Abraham	Remove unused variables	commit \| commitdiff \| tree
2013-06-12	Teemu Murtola	Better averaging for analysis data modules.	commit \| commitdiff \| tree
2013-06-11	Teemu Murtola	Move wman.* to src/gromacs/onlinehelp/.	commit \| commitdiff \| tree
2013-06-07	Peter Kasson	Fixes syntax for FAHCORE in CMakeLists.txt.	commit \| commitdiff \| tree
2013-06-07	Pedro Lacerda	Add a GMX_NO_CREDITS variable to not show credits	commit \| commitdiff \| tree
2013-06-06	Pedro Lacerda	Various fixes for genion	commit \| commitdiff \| tree
2013-06-05	Berk Hess	fixed DD internal state corruption with energy minimization	commit \| commitdiff \| tree
2013-06-04	Sander Pronk	Fixed inconsistent locality_order array for thread...	commit \| commitdiff \| tree
2013-06-04	Sander Pronk	Fixed deadlock on Mac OS X during thread affinity check.	commit \| commitdiff \| tree
2013-06-04	Teemu Murtola	Split cmake thread detection into core thread and thread_mpi.	commit \| commitdiff \| tree
2013-05-30	Teemu Murtola	Only build base thread support with GMX_THREAD_MPI...	commit \| commitdiff \| tree
2013-05-30	Mark Abraham	Merge "Merge branch 'release-4-6'"	commit \| commitdiff \| tree
2013-05-30	Szilárd Páll	fix unnecessary switch to polling GPU wait	commit \| commitdiff \| tree
2013-05-30	Szilard Pall	fix thread-safety issue in affinity layout detection	commit \| commitdiff \| tree
2013-05-30	Szilard Pall	add workaround for clang on AMD with FMA	commit \| commitdiff \| tree
2013-05-30	Justin Lemkul	Added GROMOS96 54A7 force field files.	commit \| commitdiff \| tree
2013-05-30	Szilard Pall	fix thread offset + stride check	commit \| commitdiff \| tree
2013-05-30	Michael Shirts	Fixing the constraint dhdl term in shake	commit \| commitdiff \| tree
2013-05-30	David van der Spoel	Fixes #1194 error reading 4.5.5 tpr files with dihres	commit \| commitdiff \| tree
2013-05-30	Mark Abraham	Work around for correct treatment of all-vs-all	commit \| commitdiff \| tree
2013-05-28	Carsten Kutzner	Fixed calculation of slab buffer size for flexible...	commit \| commitdiff \| tree
2013-05-28	Teemu Murtola	Fix an error in selection online help.	commit \| commitdiff \| tree
2013-05-28	Carsten Kutzner	Fix for a rare condition in flexible rotation potentials.	commit \| commitdiff \| tree
2013-05-25	Mark Abraham	Make FFT detection quieter when nothing is changing	commit \| commitdiff \| tree
2013-05-24	Sander Pronk	Fixed a potential race condition in tMPI_Thread_create()	commit \| commitdiff \| tree
2013-05-22	Teemu Murtola	Add a few sequence diagrams to Doxygen docs.	commit \| commitdiff \| tree
2013-05-22	Mark Abraham	Clarify g_gyrate -h	commit \| commitdiff \| tree
2013-05-22	Mark Abraham	Fix g_chi -omega	commit \| commitdiff \| tree
2013-05-22	Pedro Lacerda	Fix genion -nq and -pq when using -neutral	commit \| commitdiff \| tree
2013-05-21	Mark Abraham	Updated grompp cut-off and PME-Switch checks	commit \| commitdiff \| tree
2013-05-21	P S Lacerda	Fix -neutral option in genion	commit \| commitdiff \| tree
2013-05-21	Michael Shirts	Fixed problem with bond constraint dhdl being left out	commit \| commitdiff \| tree
2013-05-21	Erik Lindahl	Fujitsu Sparc64 acceleration and general fixes for...	commit \| commitdiff \| tree
2013-05-21	Sander Pronk	New version of thread_mpi with many minor enhancements	commit \| commitdiff \| tree
2013-05-21	Mark Abraham	Hack compiler flags to silence warnings on gcc 4.8	commit \| commitdiff \| tree
2013-05-17	Mark Abraham	Introduce fatal error for GB with FE	commit \| commitdiff \| tree
2013-05-16	Justin Lemkul	Fixed g_sgangle legends.	commit \| commitdiff \| tree
2013-05-16	Carsten Kutzner	Choose the PBC image of each rotation group atom depending	commit \| commitdiff \| tree
2013-05-15	Christoph Junghans	Merge "fixed incorrect scaling of cos-acceleration...	commit \| commitdiff \| tree
2013-05-10	Sander Pronk	Merge "Fixing handling of perturbation mass changes...	commit \| commitdiff \| tree
2013-05-10	Mark Abraham	Merge "Fixes "Function type U-B not implemented in...	commit \| commitdiff \| tree
2013-05-10	Mark Abraham	Merge "improve build with OpenMM, still not 100% fixed...	commit \| commitdiff \| tree
2013-05-10	Mark Abraham	Merge "fixing rerun with free energy + .xtc or .gro...	commit \| commitdiff \| tree
2013-05-10	Christoph Junghans	improve build with OpenMM, still not 100% fixed	commit \| commitdiff \| tree
2013-05-02	Mark Abraham	Merge "Improve master-specific CMake behavior."	commit \| commitdiff \| tree
2013-05-01	David van der Spoel	Merge "Updated source for Van der Waals radii."	commit \| commitdiff \| tree
2013-04-29	Teemu Murtola	Remove gmx_ana_index_t::name and unused code.	commit \| commitdiff \| tree
2013-04-29	Carsten Kutzner	Evaluate enforced rotation potenial with Verlet, fixes...	commit \| commitdiff \| tree
2013-04-29	Christoph Junghans	Merge "Fix another bug in selection subexpression handling."	commit \| commitdiff \| tree
2013-04-29	Christoph Junghans	Merge "Fix bug in selection subexpression handling."	commit \| commitdiff \| tree
2013-04-29	Mark Abraham	Merge "Update linking to MKL and document same" into...	commit \| commitdiff \| tree
2013-04-29	Mark Abraham	Merge "general SIMD acceleration for angles+dihedrals...	commit \| commitdiff \| tree
2013-04-29	Mark Abraham	Merge "PME load balancing now checks for PME grid restrictio...	commit \| commitdiff \| tree
2013-04-29	Berk Hess	general SIMD acceleration for angles+dihedrals	commit \| commitdiff \| tree
2013-04-29	Mark Abraham	Merge "Fixing a problem with dh/dl 1-4 interactions...	commit \| commitdiff \| tree
2013-04-26	Mark Abraham	Merge "CUDA PME kernels with analytical Ewald correction...	commit \| commitdiff \| tree
2013-04-26	Mark Abraham	Merge "improved load balancing with Verlet cut-off...	commit \| commitdiff \| tree
2013-04-26	Christoph Junghans	Merge "v-rescale works with tau-t >= 0" into release-4-6	commit \| commitdiff \| tree
2013-04-25	Mark Abraham	Merge "Merge branch 'release-4-5-patches'" into release-4-6	commit \| commitdiff \| tree
2013-04-25	David van der Spoel	Updated source for Van der Waals radii.	commit \| commitdiff \| tree
2013-04-22	Mark Abraham	Merge "Use git snapshots of the tests if are on git...	commit \| commitdiff \| tree
2013-04-17	Teemu Murtola	Add check for empty selections.	commit \| commitdiff \| tree
2013-04-17	Teemu Murtola	Implement remaining SelectionOption flags.	commit \| commitdiff \| tree
2013-04-16	Christoph Junghans	Use git snapshots of the tests if are on git	commit \| commitdiff \| tree
2013-04-16	David van der Spoel	Merge "corrected grompp rvdw charge-group radii check...	commit \| commitdiff \| tree
2013-04-13	David van der Spoel	Merge "added mdrun check for Verlet+perturbed atoms...	commit \| commitdiff \| tree
2013-04-12	David van der Spoel	Merge "Add histogram output for 'gmx gangle'."	commit \| commitdiff \| tree
2013-04-12	Mark Abraham	Merge "removed x86 specifics from nbnxn SIMD kernels...	commit \| commitdiff \| tree
2013-04-12	Mark Abraham	Merge "corrected log file wall time breakdown" into...	commit \| commitdiff \| tree
2013-04-12	Mark Abraham	Merge "made PME work with a mix of 1 and more threads...	commit \| commitdiff \| tree
2013-04-10	Teemu Murtola	Merge "Merge release-4-5-patches into release-4-6"...	commit \| commitdiff \| tree
2013-03-29	Christoph Junghans	Merge "Added install guide section for BLAS/LAPACK...	commit \| commitdiff \| tree
2013-03-22	Roland Schulz	Fix problems with intel-mpi	commit \| commitdiff \| tree
2013-03-22	Teemu Murtola	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2013-03-19	Christoph Junghans	Merge "Essential dynamics: fixed legend in ED .xvg...	commit \| commitdiff \| tree
2013-03-12	Mark Abraham	Merge "fix broken things in mkhtml" into release-4-6	commit \| commitdiff \| tree
2013-03-11	Mark Abraham	Merge "Fixes linkage with FFTW + MKL for BLAS/LAPACK...	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Merge "Uncrustify template.cpp and selection.cpp."	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2013-03-06	Roland Schulz	Merge "fixed PME time print with -ntomp_pme != -ntomp...	commit \| commitdiff \| tree
2013-03-05	Mark Abraham	New patch release 4.6.1	commit \| commitdiff \| tree
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