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2013-12-01	Teemu Murtola	Adjust more copyright headers	commit \| commitdiff \| tree
2013-11-30	Mark Abraham	Add machinery for integration tests	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Remove unused config.h defines	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Remove obsolete FindGit.cmake	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Make help texts refer to gmx-something	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Move gmx_omp.* into src/gromacs/utility/	commit \| commitdiff \| tree
2013-11-28	Rossen Apostolov	Updated to gmock-1.7.0	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Generate gromacs.7 from the wrapper binary	commit \| commitdiff \| tree
2013-11-28	Mark Abraham	Remove IMD manual section	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Uniform headers in HTML pages	commit \| commitdiff \| tree
2013-11-27	Teemu Murtola	Remove unused gmx_membed.c	commit \| commitdiff \| tree
2013-11-26	Teemu Murtola	Remove #ifdef GMX_THREAD_MPI for basic thread safety.	commit \| commitdiff \| tree
2013-11-26	Mark Abraham	Moved gromos87 writing code into fileio module	commit \| commitdiff \| tree
2013-11-26	Mark Abraham	Add license for Sun XDR routines	commit \| commitdiff \| tree
2013-11-19	Teemu Murtola	Add some missing copyright headers.	commit \| commitdiff \| tree
2013-11-19	Teemu Murtola	Add back mechanism for cross-tool hyperlinks.	commit \| commitdiff \| tree
2013-11-18	Mark Abraham	Bump CMake requirement to 2.8.8	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Move binary directory search to ProgramInfo.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Remove more obsolete content from share/html.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Allow copying of HelpWriterContext.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Add listing of programs by topic to HTML output.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Some module dependency cleanup.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Reorganize help writing code.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Make gmx-gangle more flexible with multiple angles	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Turn on most -Wunused warnings for C++ code.	commit \| commitdiff \| tree
2013-11-15	Teemu Murtola	Consistently handle NULL at argv[argc].	commit \| commitdiff \| tree
2013-11-15	Erik Lindahl	Merge "Merge branch release-4-6"	commit \| commitdiff \| tree
2013-11-15	Teemu Murtola	Simplify GMX_X11 handling.	commit \| commitdiff \| tree
2013-11-13	Mark Abraham	Fix minor things before release	commit \| commitdiff \| tree
2013-11-13	Szilard Pall	Clarified GPU selection output and mdrun help	commit \| commitdiff \| tree
2013-11-12	Teemu Murtola	Upgrade Doxygen layout to 1.8.5.	commit \| commitdiff \| tree
2013-11-07	Berk Hess	corrected dynamic load balancing when sharing GPUs	commit \| commitdiff \| tree
2013-11-07	David van der Spoel	12 new quotes	commit \| commitdiff \| tree
2013-11-07	Marcus D. Hanwell	Added enumeration of valid build types for CMake GUI	commit \| commitdiff \| tree
2013-11-05	Berk Hess	GPU detection is done once per physical node	commit \| commitdiff \| tree
2013-11-05	Berk Hess	removed (harmless) left-over in nbnxn SIMD kernels	commit \| commitdiff \| tree
2013-11-01	Mark Abraham	Added gmx_omp_nthreads_set for use in testing	commit \| commitdiff \| tree
2013-10-31	Mark Abraham	Rename GMX_IS_* to GMX_TARGET_*	commit \| commitdiff \| tree
2013-10-31	Teemu Murtola	Move more timing routines into timing/.	commit \| commitdiff \| tree
2013-10-30	Mark Abraham	Silence warnings about scanner.cpp	commit \| commitdiff \| tree
2013-10-30	Alexey Shvetsov	nbnxn_kernels: Clean up -Wunused-parameter warnings	commit \| commitdiff \| tree
2013-10-30	Teemu Murtola	Markup substitution through HelpWriterContext.	commit \| commitdiff \| tree
2013-10-30	Mark Abraham	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2013-10-29	Alexey Shvetsov	mdlib: Clean up -Wunused-parameter warnings	commit \| commitdiff \| tree
2013-10-29	Berk Hess	corrected volume with serial NPT replica exchange	commit \| commitdiff \| tree
2013-10-29	Mark Abraham	Renamed and removed last references to GMX_CRAY_XT3	commit \| commitdiff \| tree
2013-10-29	Magnus Lundborg	Fixed memory leak in gmxdump.	commit \| commitdiff \| tree
2013-10-28	Berk Hess	improved the nbnxn buffer size estimate with GPUs	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Overview Doxygen pages for analysis framework.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Some overview content for Doxygen documentation.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Misc. Doxygen updates for src/gromacs/utility/.	commit \| commitdiff \| tree
2013-10-28	Mark Abraham	Create fileio module	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Simplify code structure for C++ analysis tools	commit \| commitdiff \| tree
2013-10-26	Mark Abraham	Cleaned up run time measurement	commit \| commitdiff \| tree
2013-10-26	Mark Abraham	Added documentation for gmx_runtime_t struct	commit \| commitdiff \| tree
2013-10-20	Teemu Murtola	Remove useless warnings from Doxygen logs.	commit \| commitdiff \| tree
2013-10-18	Mark Abraham	BlueGene/Q Verlet cut-off scheme kernels	commit \| commitdiff \| tree
2013-10-18	Mark Abraham	Call atomics from TestAtomic.c	commit \| commitdiff \| tree
2013-10-18	Roland Schulz	Fix tMPI_Atomic_memory_barrier for MIC	commit \| commitdiff \| tree
2013-10-17	Mark Abraham	Move mdrun trajectory writing into wrapper function	commit \| commitdiff \| tree
2013-10-17	Mark Abraham	Fix typo in g_membed documentation	commit \| commitdiff \| tree
2013-10-17	Roland Schulz	Fix SIMD C reference nbnxn kernels	commit \| commitdiff \| tree
2013-10-17	Michael Shirts	Restarting from checkpoint no longer reinitializes...	commit \| commitdiff \| tree
2013-10-16	Teemu Murtola	Remove latex help export.	commit \| commitdiff \| tree
2013-10-16	Mark Abraham	Move manual repo into code repo, and make it build	commit \| commitdiff \| tree
2013-10-16	Berk Hess	avoid division by zero in SIMD angles and dihedrals	commit \| commitdiff \| tree
2013-10-16	Michael Shirts	turning off expanded ensemble for all integrators but...	commit \| commitdiff \| tree
2013-10-16	Berk Hess	fixed a half bin misalignment in gmx_vanhove -or	commit \| commitdiff \| tree
2013-10-16	Michael Shirts	Fixes a problem with pair type 2 interactions with...	commit \| commitdiff \| tree
2013-10-15	Szilard Pall	make use of CUDA stream priorities	commit \| commitdiff \| tree
2013-10-15	Teemu Murtola	Fix/improve installation directory logic.	commit \| commitdiff \| tree
2013-10-11	Berk Hess	introduced general 4-wide SIMD support	commit \| commitdiff \| tree
2013-10-10	Mark Abraham	Introduced MPI initialization counter	commit \| commitdiff \| tree
2013-10-07	Teemu Murtola	HTML export from the wrapper binary.	commit \| commitdiff \| tree
2013-10-04	Mark Abraham	Further consolidation of commrec initialization	commit \| commitdiff \| tree
2013-10-04	Mark Abraham	More consolidation of MPI initialization	commit \| commitdiff \| tree
2013-10-04	Teemu Murtola	Reorganize static/shared library management.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	CMake helper for tracking cache variable changes.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Remove unused shift_util.c.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Improve diagnostics with empty selections.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Man page export from the wrapper binary.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Use filenm.c data for FileNameOption.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Fix warnings with Doxygen 1.8.5.	commit \| commitdiff \| tree
2013-10-02	Berk Hess	Fixes reaction field free energy bug	commit \| commitdiff \| tree
2013-10-01	Mark Abraham	Broke some useless dependencies	commit \| commitdiff \| tree
2013-10-01	Mark Abraham	Split MPI initialization from t_commrec construction	commit \| commitdiff \| tree
2013-10-01	Mark Abraham	Silence clang warnings	commit \| commitdiff \| tree
2013-09-30	David van der Spoel	Change name of gmxdump to dump and gmxcheck to check	commit \| commitdiff \| tree
2013-09-29	Szilard Pall	allow compilation to optimize for CUDA compute cap...	commit \| commitdiff \| tree
2013-09-29	Teemu Murtola	Remove obsolete efHAT and src/ngmx/dlgtest.	commit \| commitdiff \| tree
2013-09-29	David van der Spoel	Fixes bug in processing virtual_sitesn in grompp.	commit \| commitdiff \| tree
2013-09-29	Jarvist Moore Frost	Corrected info text. -center --> -boxcenter	commit \| commitdiff \| tree
2013-09-27	Manuel Luitz	Fixed limitations in g_cluster	commit \| commitdiff \| tree
2013-09-26	Michael Shirts	logic fix for free energies with mdrun -rerun	commit \| commitdiff \| tree
2013-09-26	Christoph Junghans	Drop md5sum check for GMX_BUILD_OWN_FFTW	commit \| commitdiff \| tree
2013-09-26	Mark Abraham	Un-duplicate gmx_gettime code	commit \| commitdiff \| tree
2013-09-26	Teemu Murtola	Merge "Merge branch release-4-6"	commit \| commitdiff \| tree
2013-09-26	Alexey Shvetsov	g_tune_pme: Clean up -Wunused-parameter warnings	commit \| commitdiff \| tree
2013-09-26	David van der Spoel	Made MW of the Vsite particle type.	commit \| commitdiff \| tree
2013-09-26	Alexey Shvetsov	programs: clean up -Wunused-parameter warnings	commit \| commitdiff \| tree
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