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Merge branch release-2018
2018-01-04 Mark AbrahamMerge branch release-2018
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2018-01-04 Erik LindahlImplement changes for CMake policy 0068
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2018-01-04 Mark AbrahamAdd test config of GPU build on slave without GPU
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2018-01-04 Paul BauerFix gmx msd when using COM removal and molecules
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2018-01-03 Erik LindahlFix index error in gmx chi
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2018-01-03 Paul BauerCorrect dihedral restraint section in Manual
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2018-01-03 Erik LindahlAvoid FTZ triggering simd test failures
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2018-01-02 Erik LindahlFix OpenCL compiles on Mac OS
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2018-01-02 Erik LindahlImprove manual from comments by Gang Liu
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2018-01-02 Erik LindahlMake it explicit that time units apply to begin/end...
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2018-01-02 Erik LindahlDon't require matching names between rtp and tdb files
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2018-01-02 Erik LindahlDon't write reference pull group 0 to log
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2017-12-30 Mark AbrahamFirst release candidate for version 2018
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2017-12-26 Erik LindahlFix builds on ARM & clarify (ARM) GPU support
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2017-12-22 Mark AbrahamMerge branch release-2016 into release-2018
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2017-12-21 Mark AbrahamMerge branch release-5-1 into release-2016
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2017-12-21 Mark AbrahamBump minor version for theoretical new release
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2017-12-21 Pascal MerzDocumentation and fixes for physical validation
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2017-12-21 Mark AbrahamUpdate double-precision test configurations
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2017-12-21 Roland SchulzUpdate checks for BuildOwnFFT
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2017-12-20 Mark AbrahamUse new defaultRealTolerance() to stabilise some tests
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2017-12-20 Mark AbrahamMerge "Merge branch release-2016 into release-2018...
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2017-12-20 Mark AbrahamMerge branch release-2016 into release-2018
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2017-12-19 Mark AbrahamThird beta release of 2018
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2017-12-19 Mark AbrahamFix table tests and improve table construction
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2017-12-19 Berk HessMake oversubscription warning consistent
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2017-12-19 Carsten KutznerFix electric field .mdp documentation
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2017-12-19 Erik LindahlUse reduced default tolerances for tpx comparison
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2017-12-18 Roland SchulzFix cmake error with emacs lock files in place
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2017-12-17 Roland SchulzChange avx_128_fma build to double
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2017-12-17 Roland SchulzSupport Simd4N for SimdRealWidth<4
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2017-12-14 Erik LindahlFix PBC error in gmx_spatial
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2017-12-14 Mark AbrahamMerge "Merge branch release-2016 into release-2018...
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2017-12-12 Erik LindahlDisallow ascii formats for gmx trjcat
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2017-12-12 Mark AbrahamImprove grompp missing-parameters error message
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2017-12-12 Mark AbrahamMerge branch release-2016 into release-2018
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2017-12-11 Mark AbrahamSecond beta release of 2018
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2017-12-11 Erik LindahlRemove duplicated lines from OPLS ffbonded.itp
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2017-12-11 Roland SchulzReplace intrinsic with inline asm for AVX512 unit test
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2017-12-11 Erik LindahlDon't warn about NVML clocks that are at max
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2017-12-11 Berk HessAdd grompp note for PR pcouple + position restraints
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2017-12-10 Erik LindahlRevert "Disable default-on NVML support in CMake"
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2017-12-07 Erik LindahlAdded cool quote from Viveca's defense
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2017-12-07 Roland SchulzFix AWH test accuracy
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2017-12-07 Berk HessChoose faster nbnxn SIMD kernels on AMD Zen
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2017-12-07 Roland SchulzFix exp test for ICC in double
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2017-12-07 Roland SchulzFix RelWithAssert with ICC
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2017-12-07 Aleksei IupinovRelaxed precision in spline interpolation tests
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2017-12-06 Szilárd PállImplement alternating GPU wait
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2017-12-05 Aleksei IupinovDo not accept unsupported combination "-pme cpu -pmefft...
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2017-12-05 Roland SchulzFix ArrayRef<SimdDInt32> for SSE/AVX128
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2017-12-05 Mark AbrahamUpdate testing to include cmake 3.10.0
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2017-12-05 Magnus LundborgSIMD accelerated Urey-Bradley
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2017-12-05 Berk HessFix DD exact continuation bug
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2017-12-04 Mark AbrahamFix free_gpu
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2017-12-04 Mark AbrahamMerge branch release-2016 into release-2018
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2017-12-04 Berk HessUpdate mdrun signal help text
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2017-12-04 Berk HessOnly stop at nstlist steps with -reprod
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2017-12-04 Erik LindahlFix compilation issues for AVX-512
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2017-11-28 Mark AbrahamGROMACS 2018 first beta release
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2017-11-28 Berk HessRefactor nbnxn exclusion setting
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2017-11-28 Erik LindahlImprove status messages for SIMD checks
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2017-11-27 Szilárd PállTime FFT/gather in mixed mode
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2017-11-27 Aleksei IupinovDisable failing separate PME rank tests
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2017-11-27 Paul BauerAdd GPU task information to user-guide
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2017-11-24 Aleksei IupinovEnable separate PME GPU rank
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2017-11-24 Aleksei IupinovActivate mixed mode of PME on GPU
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2017-11-24 Szilárd PállAdd GPU sharing post-submit config
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2017-11-24 Mark AbrahamUpdate developer guide
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2017-11-24 Mark AbrahamActivate PME on GPUs
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2017-11-24 Aleksei IupinovRemove outdated (already implemented) pinning TODO
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2017-11-24 Mark AbrahamAdd PME integration test
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2017-11-24 Mark AbrahamExtend task assignment code
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2017-11-24 Aleksei IupinovMention gmx_install_headers() in the developer manual
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2017-11-24 Aleksei IupinovMake FFT real-space grid use CUDA pinning for mixed...
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2017-11-24 Aleksei IupinovPin coordinates, forces and charges for PME on GPU
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2017-11-22 Pascal MerzProof of concept: Physical validation suite
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2017-11-21 Erik LindahlSeparate SIMD flag detection from management
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2017-11-21 Mark AbrahamSupport pinning in HostAllocator
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2017-11-21 Viveca LindahlAdd force correlation to AWH module
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2017-11-21 Paul BauerFirst general additions to the documentation
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2017-11-19 Viveca LindahlAdd AWH section to manual.
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2017-11-19 Viveca LindahlAdd AWH biasing module + tests
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2017-11-17 Mark AbrahamUse HostAllocationPolicy for chargeA
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2017-11-17 Mark AbrahamAdd checking function for whether a buffer is pinned
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2017-11-17 Mark AbrahamImprove handling of PME GPU force buffer
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2017-11-15 Aleksei IupinovRename and expose "generic" GPU memory transfer functions
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2017-11-10 Mark AbrahamImport cmake Modules/FindCUDA.cmake
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2017-11-09 Aleksei IupinovRename synchronous GPU transfer functions to match...
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2017-11-09 Mark AbrahamPrepared t_mdatoms for using vector
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2017-11-09 Mark AbrahamIntroduce HostAllocationPolicy
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2017-11-09 Roland SchulzICC should use ZMM if code anyhow uses ZMM
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2017-11-07 Mark AbrahamReform gmx_pme_pp alloc and use vector
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2017-11-07 Mark AbrahamIntroduce gmxopencl.h
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2017-11-07 Mark AbrahamTest clang on ARM in nightly matrix
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2017-11-07 Szilárd PállAdd wallcycle timer for the PME GPU F reduction
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2017-11-07 Szilárd PállSplit off nbnxn GPU timing and staging reduction
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2017-11-07 Mark AbrahamImprove PME includes
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2017-11-07 Szilárd PállDeduplicate CUDA and OpenCL timer struct
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2017-11-06 David van der SpoelFixed check for water in gen_vsite.cpp
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