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2012-11-28	Mark Abraham	Merge "Fix Window-GPU build" into release-4-6	commit \| commitdiff \| tree
2012-11-28	Christoph Junghans	Merge "Fix cpack src ignore rule" into release-4-6	commit \| commitdiff \| tree
2012-11-28	Roland Schulz	Merge "Remove CVS files" into release-4-6	commit \| commitdiff \| tree
2012-11-28	Roland Schulz	Fix cpack src ignore rule	commit \| commitdiff \| tree
2012-11-28	Erik Lindahl	128-bit AVX kernels, with FMA instructions for Opteron...	commit \| commitdiff \| tree
2012-11-28	Christoph Junghans	Add option to internally build FFTW if selected	commit \| commitdiff \| tree
2012-11-28	Mark Abraham	Merge "extended nbnxn x86 SIMD kernel blendv support...	commit \| commitdiff \| tree
2012-11-28	Szilárd Páll	Merge changes I9b865c4c,Ib709290e into release-4-6	commit \| commitdiff \| tree
2012-11-27	Michael Shirts	Removes memory allocation from free energy foreign...	commit \| commitdiff \| tree
2012-11-27	Roland Schulz	Add visibility defines	commit \| commitdiff \| tree
2012-11-27	Erik Lindahl	Merge "Added affinity support check, visibility macros...	commit \| commitdiff \| tree
2012-11-27	Erik Lindahl	Merge "fixed bug in nbnxn OpenMP non-bonded force reduction...	commit \| commitdiff \| tree
2012-11-27	David van der Spoel	Merge "Merge release-4-5-patches into release-4-6"...	commit \| commitdiff \| tree
2012-11-26	Roland Schulz	Merge "Clean up some mathematical constants" into release-4-6	commit \| commitdiff \| tree
2012-11-26	Erik Lindahl	Merge "Use stat for gmx_is_file. Fix get_libdir with...	commit \| commitdiff \| tree
2012-11-26	Sander Pronk	Made the linear extrapolation in g_bar non-default...	commit \| commitdiff \| tree
2012-11-26	Erik Lindahl	Merge "Extended build information output and reference...	commit \| commitdiff \| tree
2012-11-23	Roland Schulz	Merge "removed group non-boneded call with verlet scheme...	commit \| commitdiff \| tree
2012-11-23	Roland Schulz	Merge "improve FindGROMACS.cmake" into release-4-6	commit \| commitdiff \| tree
2012-11-23	Roland Schulz	Force C++ linking of the gpu_utils	commit \| commitdiff \| tree
2012-11-23	Szilárd Páll	Merge "Updates to CMake treatment of OpenMP" into release-4-6	commit \| commitdiff \| tree
2012-11-23	Szilard Pall	removed group non-boneded call with verlet scheme	commit \| commitdiff \| tree
2012-11-23	Roland Schulz	Merge changes I88f0dcef,I86b2a8cf,I70fb7e6d into release-4-6	commit \| commitdiff \| tree
2012-11-22	Mark Abraham	Speed up mdlib compilation by reordering file globs	commit \| commitdiff \| tree
2012-11-20	Christoph Junghans	Merge "Fix g_msd -mol" into release-4-6	commit \| commitdiff \| tree
2012-11-20	Christoph Junghans	Merge "Fixes bug in g_hbond that makes it produce fatal...	commit \| commitdiff \| tree
2012-11-19	Roland Schulz	Merge changes Ibc555d88,Iaf6f3051 into release-4-6	commit \| commitdiff \| tree
2012-11-19	Mark Abraham	Merge "SSE4.1 single-precision kernels" into release-4-6	commit \| commitdiff \| tree
2012-11-19	Mark Abraham	Minor updates to CMake usage	commit \| commitdiff \| tree
2012-11-19	Roland Schulz	Add CMAKE_PREFIX_PATH to cmake-gui	commit \| commitdiff \| tree
2012-11-19	Erik Lindahl	SSE4.1 single-precision kernels	commit \| commitdiff \| tree
2012-11-19	Roland Schulz	Merge "Remove double declaration in headers" into release-4-6	commit \| commitdiff \| tree
2012-11-19	Szilard Pall	always mark as advanced leftover FindCUDA variables	commit \| commitdiff \| tree
2012-11-17	Roland Schulz	Rename remaining GMX_ACCELERATION to GMX_CPU_ACCELERATION	commit \| commitdiff \| tree
2012-11-17	Roland Schulz	Remove double declaration in headers	commit \| commitdiff \| tree
2012-11-17	David van der Spoel	Merge "Added grompp warning" into release-4-6	commit \| commitdiff \| tree
2012-11-17	David van der Spoel	Merge "Remove rest of the xml support" into release-4-6	commit \| commitdiff \| tree
2012-11-17	Roland Schulz	Merge "Removing Zn and Ar non-OPLS atom types" into...	commit \| commitdiff \| tree
2012-11-16	Mark Abraham	Added grompp warning	commit \| commitdiff \| tree
2012-11-16	David van der Spoel	Merge "Removes unused files" into release-4-6	commit \| commitdiff \| tree
2012-11-16	Berk Hess	reduced the cost of the nbnxn OpenMP nb-force reduction	commit \| commitdiff \| tree
2012-11-15	Christoph Junghans	Merge "Test that compiling and linking of AVX works...	commit \| commitdiff \| tree
2012-11-15	Roland Schulz	Verify that FFTW can be used with shared libraries	commit \| commitdiff \| tree
2012-11-13	Erik Lindahl	Removed some unnecessary instructions, and fixed a...	commit \| commitdiff \| tree
2012-11-12	Roland Schulz	Allow to disable usage of rdtscp	commit \| commitdiff \| tree
2012-11-12	Roland Schulz	Merge "Backport ThreadMPI.cmake version from master...	commit \| commitdiff \| tree
2012-11-12	Roland Schulz	Merge "nbnxn CPU force buffer reduction now uses SIMD...	commit \| commitdiff \| tree
2012-11-12	Roland Schulz	Backport ThreadMPI.cmake version from master	commit \| commitdiff \| tree
2012-11-12	David van der Spoel	Fixes #1020 options in g_enemat	commit \| commitdiff \| tree
2012-11-10	Roland Schulz	Merge "Fix broken manual formatting" into release-4-6	commit \| commitdiff \| tree
2012-11-09	Kasson	Merge "only use CPU_COUNT if it's available" into release-4-6	commit \| commitdiff \| tree
2012-11-08	Roland Schulz	Merge "Fixed bug in the new switch-modified interactions...	commit \| commitdiff \| tree
2012-11-08	Christoph Junghans	Merge "auto-set nvcc host compiler with FindMPI detection...	commit \| commitdiff \| tree
2012-11-08	Christoph Junghans	Merge "Relocated logic of simple-vs-GPU Ewald table...	commit \| commitdiff \| tree
2012-11-08	Mark Abraham	Relocated logic of simple-vs-GPU Ewald table generation	commit \| commitdiff \| tree
2012-11-07	Christoph Junghans	Obey DSO standard	commit \| commitdiff \| tree
2012-11-07	Szilard Pall	detect externally set CPU affinity	commit \| commitdiff \| tree
2012-11-06	Roland Schulz	Fix cmake error if compiler starts with blank line	commit \| commitdiff \| tree
2012-11-06	Roland Schulz	Merge "Clarification of mdp_opt, add nstexpand defaults...	commit \| commitdiff \| tree
2012-11-06	Berk Hess	Merge "Add option to install libcudart" into release-4-6	commit \| commitdiff \| tree
2012-11-06	Michael Shirts	Clarification of mdp_opt, add nstexpand defaults &...	commit \| commitdiff \| tree
2012-11-06	Berk Hess	Merge "don't execute any mpi_info/mpiname in the path...	commit \| commitdiff \| tree
2012-11-05	Berk Hess	Merge "updated several things related with OpenMP thread...	commit \| commitdiff \| tree
2012-11-03	Christoph Junghans	Reworked version of cmake FFTW detection	commit \| commitdiff \| tree
2012-11-02	Roland Schulz	Merge all License/COPYING files into one and install it	commit \| commitdiff \| tree
2012-11-01	Roland Schulz	Fix DEB/RPM cpack generation	commit \| commitdiff \| tree
2012-10-31	Szilard Pall	fix internal/external OpenMP thread affinity clash	commit \| commitdiff \| tree
2012-10-30	Roland Schulz	Fix that no OpenMP flags are used with GMX_OPENMP=no	commit \| commitdiff \| tree
2012-10-27	Christoph Junghans	Merge "Fix large file support" into release-4-5-patches	commit \| commitdiff \| tree
2012-10-26	Roland Schulz	Fix usage of CMAKE_REQUIRED_*	commit \| commitdiff \| tree
2012-10-26	Roland Schulz	Merge "fixed incorrect PME load balancing limitation...	commit \| commitdiff \| tree
2012-10-26	Christoph Junghans	Merge "enable GMX_PREFER_STATIC_LIBS CMake option on...	commit \| commitdiff \| tree
2012-10-26	Christoph Junghans	Merge "fix false positive gcc 4.7 warning in libxdrf...	commit \| commitdiff \| tree
2012-10-26	David van der Spoel	Merge "Fixed Pulp Fiction quote" into release-4-5-patches	commit \| commitdiff \| tree
2012-10-26	Roland Schulz	Merge "set the default for nstdhdl to 100" into release-4-6	commit \| commitdiff \| tree
2012-10-25	Roland Schulz	Merge "fix CUDA non-bonded kernel pointer assignment...	commit \| commitdiff \| tree
2012-10-24	Szilárd Páll	enable GMX_PREFER_STATIC_LIBS CMake option on Mac OS X	commit \| commitdiff \| tree
2012-10-23	Berk Hess	fixed bondfree.c thread safety with free energy	commit \| commitdiff \| tree
2012-10-23	Roland Schulz	Merge "moved part of nbnxn_search.c to nbnxn_atomdata...	commit \| commitdiff \| tree
2012-10-23	Roland Schulz	Merge "fixed incorrect LJ energy with GPU and PME load...	commit \| commitdiff \| tree
2012-10-23	Berk Hess	moved part of nbnxn_search.c to nbnxn_atomdata.c	commit \| commitdiff \| tree
2012-10-23	Berk Hess	fixed incorrect LJ energy with GPU and PME load balancing	commit \| commitdiff \| tree
2012-10-23	Roland Schulz	Merge "added OpenMP parallelization for virtual sites...	commit \| commitdiff \| tree
2012-10-22	Berk Hess	added OpenMP parallelization for virtual sites	commit \| commitdiff \| tree
2012-10-22	Szilard Pall	fix CUDA non-bonded kernel pointer assignment	commit \| commitdiff \| tree
2012-10-22	Roland Schulz	Fix minor OpenMP issue for md-vv update	commit \| commitdiff \| tree
2012-10-19	Roland Schulz	Merge "[tools] Allow g_dist to use default index group...	commit \| commitdiff \| tree
2012-10-19	Kasson	Merge "renamed constraint variables rmdr to vir_r_m_dr...	commit \| commitdiff \| tree
2012-10-19	Roland Schulz	Merge "renamed pme_switch... to pme_loadbal..." into...	commit \| commitdiff \| tree
2012-10-18	Roland Schulz	Merge "Added thread affinity API to thread_mpi." into...	commit \| commitdiff \| tree
2012-10-18	Berk Hess	added OpenMP parallelization to LINCS projection	commit \| commitdiff \| tree
2012-10-17	Kasson	Merge "Make Gromacs compile without C++ compiler" into...	commit \| commitdiff \| tree
2012-10-16	Roland Schulz	Merge "made pair-search with GPU 20% faster" into release-4-6	commit \| commitdiff \| tree
2012-10-13	David van der Spoel	Merge "Fixing issues with replica exchange" into release-4-6	commit \| commitdiff \| tree
2012-10-12	Berk Hess	Merge "Fix illegal barrier in worksharing" into release-4-6	commit \| commitdiff \| tree
2012-10-04	Berk Hess	fixed backward compatibility of tpr files with dihres	commit \| commitdiff \| tree
2012-10-03	Sander Pronk	Added two #defines that state the gromacs API + program...	commit \| commitdiff \| tree
2012-09-27	Christoph Junghans	Merge "Fixed an off-by-one error in atom counting in...	commit \| commitdiff \| tree
2012-09-27	Teemu Murtola	Merge "Fix insolidangle selections near poles." into...	commit \| commitdiff \| tree
2012-09-25	Christoph Junghans	Merge "Fix REMD use of gmx_large_int_t for #steps variable...	commit \| commitdiff \| tree
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