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Reorganize Doxygen build.
2012-07-29 Teemu MurtolaReorganize Doxygen build.
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2012-07-27 Teemu MurtolaFix clang 3.2 warnings.
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2012-07-27 Teemu MurtolaFix a few doxygen warnings.
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2012-07-24 Teemu MurtolaMerge remote-tracking branch 'gerrit/release-4-6'
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2012-07-15 Teemu MurtolaDraft support for multiple help output formats.
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2012-07-15 Teemu MurtolaRemoved commas from gmx_hbond OpenMP constructs.
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2012-07-11 Teemu MurtolaImprove option initialization in traj. analysis.
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2012-07-09 Teemu MurtolaFix memory error with complex boolean selections.
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2012-07-08 Teemu MurtolaExtension completion for FileNameOption.
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2012-07-06 Teemu MurtolaBetter invalid option value handling.
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2012-07-06 Teemu MurtolaRemove remaining underscore-prefixed C++ symbols.
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2012-07-06 Teemu MurtolaMerge "Test framework for TrajectoryAnalysisModules."
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2012-07-06 Teemu MurtolaTest framework for TrajectoryAnalysisModules.
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2012-07-05 Teemu MurtolaExtract doxygen documentation for static symbols.
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2012-07-04 Teemu MurtolaFix most doxygen warnings.
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2012-07-03 Teemu MurtolaImprove ProgramInfo and use it everywhere.
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2012-07-03 Teemu MurtolaError/exception handling improvements.
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2012-07-03 Teemu MurtolaAlways build thread_mpi threading into libgromacs.
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2012-06-28 Teemu MurtolaRemove more underscore-prefixed C++ symbols.
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2012-06-27 Teemu MurtolaUse VERSION_LESS in the version detection code.
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2012-06-26 Teemu MurtolaUpdate CPack package version.
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2012-06-26 Teemu MurtolaMake C++11 test quiet after the first cmake run.
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2012-06-26 Teemu MurtolaMerge "Merge remote-tracking branch 'origin/release...
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2012-06-24 Teemu MurtolaMerge remote-tracking branch 'gerrit/release-4-6'
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2012-06-22 Teemu MurtolaIncrease coverate of selection unit tests.
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2012-06-20 Teemu MurtolaMake the selection parser exception-proof.
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2012-06-20 Teemu MurtolaUse push parser for selection parsing.
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2012-06-20 Teemu MurtolaAdd string utility functions for suffix handling.
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2012-06-20 Teemu MurtolaRename format.h to more generic stringutil.h.
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2012-06-20 Teemu MurtolaClean up option and selection flags.
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2012-06-20 Teemu MurtolaRemove (part of) underscore-prefixed C++ symbols.
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2012-06-13 Teemu MurtolaUpdates to selection online help.
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2012-06-13 Teemu MurtolaRemove unnecessary *-impl.h files.
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2012-06-01 Teemu MurtolaMore config.h cleanup.
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2012-05-30 Teemu MurtolaMake get_libdir() robust when run from build tree.
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2012-05-30 Teemu MurtolaFix use after free in g_anaeig projection code.
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2012-05-30 Teemu MurtolaFixed some memory leaks.
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2012-05-29 Teemu MurtolaImprove 'g_ana help'.
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2012-05-29 Teemu MurtolaGeneric handling of online help topics.
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2012-05-29 Teemu MurtolaAdditional features to TextTableFormatter.
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2012-05-29 Teemu MurtolaSeparated string formatting used only for help.
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2012-05-29 Teemu MurtolaReorganize linear algebra code.
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2012-05-24 Teemu MurtolaMerge "Code cleanup to avoid name collisions" into...
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2012-05-24 Teemu MurtolaImprove gmx::test::CommandLine.
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2012-05-24 Teemu MurtolaImprove analysisdata reference checks.
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2012-05-24 Teemu MurtolaMove common test code to testutils.
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2012-05-22 Teemu MurtolaFixed 'g_ana select' broken by I8806b3e0.
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2012-05-20 Teemu MurtolaRemove unused defines from config.h, part 3.
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2012-05-20 Teemu MurtolaRemove unused defines from config.h, part 2.
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2012-05-20 Teemu MurtolaRemove unused defines from config.h, part 1.
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2012-05-19 Teemu MurtolaSimplify selection parsing methods signature.
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2012-05-19 Teemu MurtolaOption parsing through SelectionOptionManager.
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2012-05-18 Teemu MurtolaSimpler required selection input from a file.
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2012-05-18 Teemu MurtolaSplit option code away from SelectionCollection.
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2012-05-17 Teemu MurtolaMerge "Fixing more clang warnings" into release-4-6
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2012-05-17 Teemu MurtolaUtility class for temporary unit testing files.
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2012-05-16 Teemu MurtolaAdd C++ methods for accessing binary name etc.
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2012-05-16 Teemu MurtolaRemove libtool-specific hacks from oenv.c.
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2012-05-15 Teemu MurtolaMerge "Membed code merge from release-4-6"
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2012-05-14 Teemu MurtolaFix clang warning introduced by new clang version.
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2012-05-09 Teemu MurtolaSimplify build system for unit tests.
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2012-05-09 Teemu MurtolaDetect module name from symlinks.
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2012-05-08 Teemu MurtolaMerge "Remove g_luck."
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2012-05-08 Teemu MurtolaPrint list of modules with 'g_ana help'.
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2012-05-08 Teemu MurtolaUse gmx::File throughout CommandLineHelpWriter.
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2012-05-07 Teemu MurtolaMerge branch 'gerrit/release-4-5-patches' into release-4-6
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2012-05-07 Teemu MurtolaGeneric handling for multiple cmd-line modules.
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2012-05-07 Teemu MurtolaHelper class for command-line utility tests.
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2012-05-07 Teemu MurtolaRemove libtool-specific hacks from statutil.c.
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2012-05-07 Teemu MurtolaPrint default file names for command-line help.
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2012-05-05 Teemu MurtolaSet project version to 5.0-dev.
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2012-05-05 Teemu MurtolaClean up cmake version generation.
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2012-05-05 Teemu MurtolaDrop support for pre-1.5.3 git for version info.
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2012-05-05 Teemu MurtolaFix cmake version info generation.
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2012-05-05 Teemu MurtolaRemoved autoconf version info generation.
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2012-05-03 Teemu MurtolaRemove g_luck.
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2012-05-03 Teemu MurtolaRemove replace.* and use replaceAll() in wman.c.
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2012-05-03 Teemu MurtolaReplace "%t" in option descriptions with time unit.
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2012-05-03 Teemu MurtolaAdd "replace all" functionality to format.h.
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2012-05-03 Teemu MurtolaAdd shared test fixture for string tests.
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2012-05-03 Teemu MurtolaInitial implementation of selection file input.
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2012-05-03 Teemu MurtolaMove OptionInfo to abstractoption.cpp.
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2012-05-03 Teemu MurtolaImplement markup substitution in command-line help.
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2012-05-03 Teemu MurtolaRewrote command line help writer.
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2012-05-03 Teemu MurtolaUse GMX_NATIVE_WINDOWS in path.cpp.
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2012-05-02 Teemu MurtolaMove HAVE_CXX11 define to gmx_header_config.h.
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2012-05-02 Teemu MurtolaMove gmx_header_config under utility/.
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2012-05-02 Teemu MurtolaRemoved unused code from src/kernel/.
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2012-05-02 Teemu MurtolaMake output_env struct properly private/opaque.
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2012-05-02 Teemu MurtolaRemove unused magic.h.
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2012-05-02 Teemu MurtolaRemove #include <config.h> from pull_rotation.h.
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2012-05-02 Teemu MurtolaMerge "Merge release-4-6 into master"
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2012-05-02 Teemu MurtolaAdd tests for PDB-specific selection methods.
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2012-05-01 Teemu MurtolaRemove unnecessary uses of gmx_header_config.h.
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2012-05-01 Teemu MurtolaRemove unused files.
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2012-04-28 Teemu MurtolaMerge "Fix for sigaction" into release-4-6
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2012-04-27 Teemu MurtolaFix version info generation for autoconf.
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2012-04-26 Teemu MurtolaFix File::readToString() on Windows.
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2012-04-26 Teemu MurtolaMore error checking to gmx::File.
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2012-04-26 Teemu MurtolaMove string array concatenation to format.h.
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