BioD PNPI Git Repos - alexxy/gromacs.git/search

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2018-10-08	Roland Schulz	Remove majority of OCL command line constants	commit \| commitdiff \| tree
2018-10-07	Szilárd Páll	Use new GPU slave for AMD OpenCL verify runs	commit \| commitdiff \| tree
2018-10-05	Roland Schulz	Fix multiple bugs detected on Windows	commit \| commitdiff \| tree
2018-10-04	Roland Schulz	Use subgroup for warp_any and CJ4 prefetch	commit \| commitdiff \| tree
2018-10-04	Mark Abraham	Replace CUDA call deprecated in CUDA 10	commit \| commitdiff \| tree
2018-09-27	Roland Schulz	Recognize Intel GPU as compatible	commit \| commitdiff \| tree
2018-09-13	Roland Schulz	Remove sparc64_hpc_ace nonbonded kernels	commit \| commitdiff \| tree
2018-09-07	Mark Abraham	Minor fixes to GPU build system	commit \| commitdiff \| tree
2018-08-27	Aleksei Iupinov	Prepare pme-gpu-types.h for OpenCL	commit \| commitdiff \| tree
2018-08-21	Szilárd Páll	Request flushing denorms to zero in OpenCL	commit \| commitdiff \| tree
2018-06-25	Aleksei Iupinov	Move vectype_ops.clh into gpu_utils	commit \| commitdiff \| tree
2018-06-25	Aleksei Iupinov	Move the PME GPU kernel launch functions into pme-gpu...	commit \| commitdiff \| tree
2018-05-31	Aleksei Iupinov	PME OpenCL 3D FFT transform is implemented, using clFFT	commit \| commitdiff \| tree
2018-05-30	Aleksei Iupinov	Make PME GPU structures use DeviceBuffer	commit \| commitdiff \| tree
2018-05-29	Szilárd Páll	Switch to CUDA 9.2 + gcc 7	commit \| commitdiff \| tree
2018-04-20	Szilárd Páll	Minor fix for pre-submit matrix docs	commit \| commitdiff \| tree
2018-04-19	Szilárd Páll	Move the PME GPU clearing to the end of the step	commit \| commitdiff \| tree
2018-04-18	Mark Abraham	Introduce gmx_used_in_debug	commit \| commitdiff \| tree
2018-04-13	Szilárd Páll	Use trivalue option for GMX_HWLOC	commit \| commitdiff \| tree
2018-03-20	Vedran Miletić	Document matrix_convert function in PBC	commit \| commitdiff \| tree
2018-03-12	Szilárd Páll	Avoid icc-specific -march=core-avx2 flag with gcc/clang	commit \| commitdiff \| tree
2018-03-06	Szilárd Páll	Extend "Finding out how to run mdrun better" section	commit \| commitdiff \| tree
2018-03-06	Aleksei Iupinov	Isolate PME GPU spline parameter indexing in inline...	commit \| commitdiff \| tree
2018-03-05	Aleksei Iupinov	Stop using custom FindOpenCL.cmake, per TODO	commit \| commitdiff \| tree
2018-03-05	Aleksei Iupinov	Correct the nbnxn_gpu_compile_kernels() docs	commit \| commitdiff \| tree
2018-02-21	Szilárd Páll	Switch pre-submit CUDA 8.0 test to 9.0	commit \| commitdiff \| tree
2018-02-20	Szilárd Páll	Avoid aborting mdrun when GPU sanity check detects...	commit \| commitdiff \| tree
2018-02-18	Aleksei Iupinov	Replace *_free_buffered calls by freeDeviceBuffer	commit \| commitdiff \| tree
2018-02-15	Aleksei Iupinov	Add freeDeviceBuffer GPU utility function	commit \| commitdiff \| tree
2018-01-18	Mark Abraham	Bump version numbers for 2019 development	commit \| commitdiff \| tree
2017-11-27	Berk Hess	Enable auto thread pinning with thread limiting	commit \| commitdiff \| tree
2017-11-16	Berk Hess	Also print 1x1 pair-list setup to log	commit \| commitdiff \| tree
2017-11-07	Szilárd Páll	Use -mavx2 -mfma instead of -march with AVX2	commit \| commitdiff \| tree
2017-11-07	Szilárd Páll	Merge common nbnxn CUDA/OpenCL GPU wait code-paths	commit \| commitdiff \| tree
2017-10-19	Szilárd Páll	Disable OpenMP with clang 3.4 post-submit config	commit \| commitdiff \| tree
2017-10-12	Szilárd Páll	Remove the size_t from the PME gather CUDA kenels	commit \| commitdiff \| tree
2017-10-03	Szilárd Páll	Enable compiling CUDA device code with clang	commit \| commitdiff \| tree
2017-10-03	Berk Hess	Move calling of special force functions	commit \| commitdiff \| tree
2017-08-29	Szilárd Páll	Fix typo and tweak env var docs	commit \| commitdiff \| tree
2017-08-29	Berk Hess	Set default GMX_OPENMP_MAX_THREADS to 64	commit \| commitdiff \| tree
2017-07-19	Mark Abraham	Made post-submit config to test clang+openmp.	commit \| commitdiff \| tree
2017-07-09	Berk Hess	Restructure the load balancing timing	commit \| commitdiff \| tree
2017-05-22	Roland Schulz	Remove TMPI_ATOMICS from config.h	commit \| commitdiff \| tree
2017-03-29	Szilárd Páll	Refactor CUDA kernel use of tables	commit \| commitdiff \| tree
2017-03-17	Szilárd Páll	Allow bypassing OpenCL device compatibility check	commit \| commitdiff \| tree
2017-01-30	Mark Abraham	Fix multi-domain reruns	commit \| commitdiff \| tree
2017-01-05	Berk Hess	Fix flat-bottom position restraints + DD + OpenMP	commit \| commitdiff \| tree
2016-12-01	Mark Abraham	Add INSTALL-dev to aid people doing unusual builds	commit \| commitdiff \| tree
2016-12-01	Aleksei Iupinov	Move GPU assignment functions into a separate file	commit \| commitdiff \| tree
2016-11-17	Szilárd Páll	Correct kernel launch bounds for CUDA sm_60	commit \| commitdiff \| tree
2016-11-01	Szilárd Páll	Merge "Merge branch release-2016"	commit \| commitdiff \| tree
2016-10-26	Szilárd Páll	Add GMX_DISABLE_GPU_TIMING env var	commit \| commitdiff \| tree
2016-10-09	Szilárd Páll	Correct kernel launch bounds for CUDA sm_60	commit \| commitdiff \| tree
2016-09-22	Berk Hess	Fix gcc warning in AlignedAllocator	commit \| commitdiff \| tree
2016-08-24	Mark Abraham	Remove hacks for outdated BlueGene support	commit \| commitdiff \| tree
2016-07-05	Szilárd Páll	Document GMX_GPU_APPLICATION_CLOCKS	commit \| commitdiff \| tree
2016-06-08	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-03	Vedran Miletić	Write OpenCL build log prior to checking build status	commit \| commitdiff \| tree
2016-05-10	Berk Hess	Fix CUDA shmem bug	commit \| commitdiff \| tree
2016-05-06	Berk Hess	OpenMP parallelization for pull	commit \| commitdiff \| tree
2016-04-26	Vedran Miletić	Disable CUDA profiler when using OpenCL	commit \| commitdiff \| tree
2016-04-26	Szilárd Páll	Fix OpenCL assertion	commit \| commitdiff \| tree
2016-04-13	Szilárd Páll	Spelling fixes	commit \| commitdiff \| tree
2016-04-13	Szilárd Páll	Do not create empty man/man7 directory	commit \| commitdiff \| tree
2016-04-04	Szilárd Páll	Mark more variables as advanced	commit \| commitdiff \| tree
2016-03-31	Szilárd Páll	Fix multiple tMPI ranks per OpenCL device	commit \| commitdiff \| tree
2016-03-22	Berk Hess	Avoid assertion failure in pme_loadbal_do	commit \| commitdiff \| tree
2016-03-05	Mark Abraham	Add SETTLE unit tests	commit \| commitdiff \| tree
2016-02-17	Szilárd Páll	reintroduce supercl interaction mask constant	commit \| commitdiff \| tree
2016-02-17	Szilárd Páll	change macros to constants in GPU code	commit \| commitdiff \| tree
2016-02-15	Szilárd Páll	Allow GMX_NB_MIN_CI=0 to be passed	commit \| commitdiff \| tree
2016-02-11	Szilárd Páll	Re-enable LJ-PME + Lorentz-Berthelot on GPUs	commit \| commitdiff \| tree
2016-02-06	Szilard Pall	Use cudaLaunchKernel with CUDA 7.0 and later	commit \| commitdiff \| tree
2016-01-20	Szilárd Páll	Merge remote-tracking branch 'origin/release-5-1' into...	commit \| commitdiff \| tree
2016-01-05	Szilard Pall	remove duplicate macros and enable Wundef in CUDA	commit \| commitdiff \| tree
2015-11-04	Szilard Pall	Tweak NVML-related messages	commit \| commitdiff \| tree
2015-11-01	Szilard Pall	Fix bug in cycle subcounter management	commit \| commitdiff \| tree
2015-10-15	Szilard Pall	Fix reset error message	commit \| commitdiff \| tree
2015-09-17	Szilard Pall	Fix broken OpenCL detection	commit \| commitdiff \| tree
2015-06-29	Szilard Pall	Fix CUDA inter-stream synchronization issue	commit \| commitdiff \| tree
2015-06-17	Szilard Pall	fix minor CUDA NB kernel performance regression	commit \| commitdiff \| tree
2015-06-08	Szilard Pall	add last two GROMACS paper citations	commit \| commitdiff \| tree
2015-05-14	Szilard Pall	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree
2015-03-11	Berk Hess	Reduced cost of Berendsen pressure coupling	commit \| commitdiff \| tree
2015-01-16	Szilard Pall	Improve and clarify mdrun behavior with nsteps<0	commit \| commitdiff \| tree
2014-12-10	Szilard Pall	Fix nstep command line override print	commit \| commitdiff \| tree
2014-11-14	Szilárd Páll	Start nvprof profiling at counter reset	commit \| commitdiff \| tree
2014-07-27	Roland Schulz	Remove individual cuda libraries	commit \| commitdiff \| tree
2014-06-17	Berk Hess	Updated mdrun -npme documentation	commit \| commitdiff \| tree
2014-05-24	Rossen Apostolov	Allow trjconv to keep some box dimensions unchanged.	commit \| commitdiff \| tree
2014-02-28	Szilard Pall	Improved CUDA non-bonded kernel performance	commit \| commitdiff \| tree

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