biod.pnpi.spb.ru
/
alexxy
/
gromacs.git
/ search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
Use std::swap in LINCS
2018-12-27
Szilárd Páll
Use std::swap in LINCS
commit
|
commitdiff
|
tree
2018-12-27
Berk Hess
Use AtomPair for LINCS indexing
commit
|
commitdiff
|
tree
2018-12-27
Artem Zhmurov
The tests for LINCS and SHAKE constraints.
commit
|
commitdiff
|
tree
2018-12-27
Berk Hess
Use arrayref in LINCS
commit
|
commitdiff
|
tree
2018-12-27
Kevin Boyd
Use std::vector for trotter_seq
commit
|
commitdiff
|
tree
2018-12-27
Kevin Boyd
Make all thread-mpi threads release cr structure
commit
|
commitdiff
|
tree
2018-12-26
Kevin Boyd
Fix small leaks in do_md cleanup
commit
|
commitdiff
|
tree
2018-12-22
David van der Spoel
Revert "Removed t_topology from gmx msd"
commit
|
commitdiff
|
tree
2018-12-05
David van der Spoel
Added new testing code for normal mode analysis.
commit
|
commitdiff
|
tree
2018-12-04
David van der Spoel
Small update to mdrun tests.
commit
|
commitdiff
|
tree
2018-12-04
David van der Spoel
Removed gmx morph
commit
|
commitdiff
|
tree
2018-12-04
David van der Spoel
Removed gmx dyndom
commit
|
commitdiff
|
tree
2018-12-04
David van der Spoel
Removed gmx anadock
commit
|
commitdiff
|
tree
2018-11-21
David van der Spoel
Merge branch 'release-2019'
commit
|
commitdiff
|
tree
2018-11-19
Mark Abraham
Fix inefficient shell minimization
commit
|
commitdiff
|
tree
2018-11-18
David van der Spoel
Added citation for new analysis functionality.
commit
|
commitdiff
|
tree
2018-11-08
Paul Bauer
Actually fix gmx helix segmentation fault
commit
|
commitdiff
|
tree
2018-10-15
Mark Abraham
Improve robustness of end-to-end testing
commit
|
commitdiff
|
tree
2018-06-22
Mark Abraham
Update energy and trajectory frame types
commit
|
commitdiff
|
tree
2018-06-12
Mark Abraham
Prepare for GROMACS 2019 release notes
commit
|
commitdiff
|
tree
2018-06-12
David van der Spoel
Let gmx nmeig print thermochemistry.
commit
|
commitdiff
|
tree
2018-03-16
David van der Spoel
Split off entropy calculation to separate file.
commit
|
commitdiff
|
tree
2018-01-04
Erik Lindahl
Improve frame time/step handling in trjconv
commit
|
commitdiff
|
tree
2018-01-03
Erik Lindahl
Fix trjconv for tdump<frame timestep
commit
|
commitdiff
|
tree
2018-01-01
Erik Lindahl
Fix gmx density for non-mass calculations
commit
|
commitdiff
|
tree
2017-12-28
David van der Spoel
Fixes and updates for xplor2gml.pl and atom_nom.tbl
commit
|
commitdiff
|
tree
2017-10-30
David van der Spoel
Fixed mdp output from electric field code.
commit
|
commitdiff
|
tree
2017-10-27
Aleksei Iupinov
Remove unused PME grid dump debug functions
commit
|
commitdiff
|
tree
2017-10-17
David van der Spoel
Fixed missing entries in nrnb arrays.
commit
|
commitdiff
|
tree
2017-09-04
Teemu Murtola
Introduce self-pairs search in nbsearch
commit
|
commitdiff
|
tree
2017-09-04
Teemu Murtola
Refactor analysis nbsearch tests
commit
|
commitdiff
|
tree
2017-08-09
Roland Schulz
Use table Ewald for Skylake
commit
|
commitdiff
|
tree
2017-08-03
David van der Spoel
Fixed bug in gmx disres indexing arrays.
commit
|
commitdiff
|
tree
2017-08-02
Berk Hess
Make loop variables in orires.cpp local
commit
|
commitdiff
|
tree
2017-08-02
Berk Hess
Add check for nr of orientation restraints
commit
|
commitdiff
|
tree
2017-07-19
David van der Spoel
Fixed test-order dependency in gmxpreprocess tests.
commit
|
commitdiff
|
tree
2017-07-19
David van der Spoel
Fix non-reproducability of clustsize tests.
commit
|
commitdiff
|
tree
2017-04-29
Carsten Kutzner
Minor header file cleanup in ED, IMD and CompEL modules
commit
|
commitdiff
|
tree
2017-04-22
Mark Abraham
Clean up memory usage with oenv and xvg writing
commit
|
commitdiff
|
tree
2017-03-13
Teemu Murtola
Improve option support & tests for key-value trees
commit
|
commitdiff
|
tree
2017-03-13
Teemu Murtola
Remove manual alignment from InMemorySerializer
commit
|
commitdiff
|
tree
2017-03-12
Teemu Murtola
Consistent TextWriter trailing whitespace handling
commit
|
commitdiff
|
tree
2017-03-12
David van der Spoel
Added tests for gmx clustsize.
commit
|
commitdiff
|
tree
2017-03-04
Vedran Miletić
Document that we now support AMD GCN on Mesa/LLVM
commit
|
commitdiff
|
tree
2017-02-28
Berk Hess
Add load balance fraction to DLB print
commit
|
commitdiff
|
tree
2017-02-28
Teemu Murtola
More documentation for key-value trees
commit
|
commitdiff
|
tree
2017-02-27
David van der Spoel
Fixes bug in gmx solvate with -shell that yielded 0...
commit
|
commitdiff
|
tree
2017-02-09
Aleksei Iupinov
Add initialization to dvdlambda in bonded forces tests
commit
|
commitdiff
|
tree
2017-02-08
Mark Abraham
Remove docs for unimplemented trjconv -clustercenter
commit
|
commitdiff
|
tree
2017-02-02
Mark Abraham
Clarify use of tau-p and pcoupltype
commit
|
commitdiff
|
tree
2017-01-30
Mark Abraham
Don't print invalid performance data
commit
|
commitdiff
|
tree
2016-12-14
Mark Abraham
Fix misleading parallelization docs for gmx wham
commit
|
commitdiff
|
tree
2016-11-21
Aleksei Iupinov
Move hardcoded PME grid indexing constants into header
commit
|
commitdiff
|
tree
2016-11-18
David van der Spoel
Added first tests of bonded force functions.
commit
|
commitdiff
|
tree
2016-11-16
Mark Abraham
Enhanced ArrayRef
commit
|
commitdiff
|
tree
2016-11-16
Mark Abraham
Created paddedvector.h
commit
|
commitdiff
|
tree
2016-10-24
Teemu Murtola
Electric field mdp parsing using options
commit
|
commitdiff
|
tree
2016-10-24
Teemu Murtola
Support for default values from Options to KeyValueTree
commit
|
commitdiff
|
tree
2016-10-14
Berk Hess
Apply Berendsen P-couple at nstpcouple steps
commit
|
commitdiff
|
tree
2016-10-14
Teemu Murtola
Use gmx_mtop_t in selections, part 3
commit
|
commitdiff
|
tree
2016-10-13
Teemu Murtola
Getter for mapped paths from KeyValueTreeTransform
commit
|
commitdiff
|
tree
2016-10-08
Berk Hess
Add readConfAndTopology
commit
|
commitdiff
|
tree
2016-10-03
Philip Loche
EW3DC for non-neutral systems
commit
|
commitdiff
|
tree
2016-10-01
Berk Hess
Fix inputrec initialization in 4 tools
commit
|
commitdiff
|
tree
2016-09-29
Berk Hess
Use std::vector in t_state
commit
|
commitdiff
|
tree
2016-09-29
Berk Hess
Add flags for optional t_atoms entries
commit
|
commitdiff
|
tree
2016-09-20
Berk Hess
Remove state duplication in serial runs
commit
|
commitdiff
|
tree
2016-09-20
David van der Spoel
Made correlation function routine use std::vector
commit
|
commitdiff
|
tree
2016-09-16
Berk Hess
Made distance restraints work with threads and DD
commit
|
commitdiff
|
tree
2016-09-15
Aleksei Iupinov
Move the PME Ewald coefficients to the PME structure
commit
|
commitdiff
|
tree
2016-09-13
Roland Schulz
Tidy: modernize-use-emplace
commit
|
commitdiff
|
tree
2016-09-13
Berk Hess
Change ED and swapstate to pointers in t_state
commit
|
commitdiff
|
tree
2016-09-11
Vedran Miletić
Print OpenCL error string instead of error code
commit
|
commitdiff
|
tree
2016-09-10
Berk Hess
Remove continuation from convert_tpr
commit
|
commitdiff
|
tree
2016-09-10
Aleksei Iupinov
Fix PME data destructor not being called
commit
|
commitdiff
|
tree
2016-09-05
David van der Spoel
Merge "Merge branch release-2016"
commit
|
commitdiff
|
tree
2016-08-27
Szilárd Páll
Make ASAN/TSAN/MSAN build types easier to discover
commit
|
commitdiff
|
tree
2016-08-27
Mark Abraham
Stop using gmx_fatal in grompp
commit
|
commitdiff
|
tree
2016-08-27
Teemu Murtola
Support KeyValueTree objects in refdata
commit
|
commitdiff
|
tree
2016-08-27
Berk Hess
Reduce rounding errors in SETTLE
commit
|
commitdiff
|
tree
2016-08-27
Roland Schulz
Fix build with GMX_USE_TNG=off
commit
|
commitdiff
|
tree
2016-08-24
David van der Spoel
Added documentation for shell potentials.
commit
|
commitdiff
|
tree
2016-07-31
David van der Spoel
Merge "Merge branch release-5-1 into release-2016"...
commit
|
commitdiff
|
tree
2016-07-08
Vedran Miletić
Print working dir before command line
commit
|
commitdiff
|
tree
2016-07-08
David van der Spoel
Merge "Merge branch release-5-1 into release-2016"...
commit
|
commitdiff
|
tree
2016-07-08
Szilárd Páll
User guide clarifications
commit
|
commitdiff
|
tree
2016-07-07
Berk Hess
Relax pull PBC check
commit
|
commitdiff
|
tree
2016-07-03
Berk Hess
Add grompp check for pull group
commit
|
commitdiff
|
tree
2016-06-27
David van der Spoel
Made gmx dos work again.
commit
|
commitdiff
|
tree
2016-06-26
Berk Hess
Fix vsite bug with MPI+OpenMP
commit
|
commitdiff
|
tree
2016-06-21
Berk Hess
Fix bug with fbposres+MPI+OpenMP
commit
|
commitdiff
|
tree
2016-05-30
Berk Hess
Add grompp check for unbound atoms
commit
|
commitdiff
|
tree
2016-05-08
Mark Abraham
Fix constants, units and conversion factors
commit
|
commitdiff
|
tree
2016-03-23
David van der Spoel
Removed srenew that was making array smaller incorrectly.
commit
|
commitdiff
|
tree
2016-01-20
David van der Spoel
Couple of new quotes
commit
|
commitdiff
|
tree
2015-12-09
Teemu Murtola
Split txtdump.*, part 1
commit
|
commitdiff
|
tree
2015-12-05
Magnus Lundborg
Write forces and velocities to compressed TNG.
commit
|
commitdiff
|
tree
2015-11-24
David van der Spoel
Fixes newly introduced bug in make_ndx.
commit
|
commitdiff
|
tree
2015-11-23
David van der Spoel
Moved domdec structures out of commrec.h.
commit
|
commitdiff
|
tree
2015-11-22
David van der Spoel
Cleanups in legacyheader/types/commrec.h
commit
|
commitdiff
|
tree
next