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Fixed mdrun fp exception with -debug
2015-03-12
Berk Hess
Fixed mdrun fp exception with -debug
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2015-03-11
Berk Hess
Added update x copy-back to update timer
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2015-03-06
Berk Hess
Improve threading of bondeds
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2015-03-06
Mark Abraham
Restore wallcycle subcounter name to "Bonded F"
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2015-03-05
Berk Hess
SIMD acceleration for LINCS
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2015-03-04
Berk Hess
COM pulling options per coord, improved cylinder
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2015-03-04
Roland Schulz
Fix GCC5 warnings
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2015-03-03
Mark Abraham
Re-implement gmx tune_pme -cpi
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2015-03-03
Erik Lindahl
Added single-accuracy SIMD double math functions
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2015-03-03
Berk Hess
Fix div by zero in PP/PME ratio
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2015-03-03
Mark Abraham
Add test that plain multi-simulation works
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2015-03-02
David van der Spoel
Updated documentation for electric fields.
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2015-03-02
Berk Hess
Added parentheses for casts in SIMD macros
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2015-03-02
Roland Schulz
Don't search installation prefix if binary is not found
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2015-03-02
Mark Abraham
Add infrastructure for running MPI integration tests
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2015-02-25
Roland Schulz
C++ conversion for PME spread/gather
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2015-02-25
Mark Abraham
Add content to user guide
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2015-02-25
Mark Abraham
Split pme.c into multiple files
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2015-02-25
Mark Abraham
Add mdp-options to user guide
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2015-02-24
Berk Hess
Fixed parallel distribution and thread count reporting
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2015-02-24
Erik Lindahl
Add AVX-512F SIMD support
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2015-02-18
Mark Abraham
Reenable SIMD for R-B dihedrals
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2015-02-13
Mark Abraham
Implemented documentation with sphinx
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2015-02-12
Vedran Miletić
Fix removal of symlinks created during installation
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2015-02-10
Roland Schulz
Don't set CFLAGS for Phi in toolchain
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2015-02-07
Roland Schulz
Make FindBoost quite
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2015-02-07
Teemu Murtola
Support more complex fixed position selections
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2015-02-06
Berk Hess
Re-enabled SIMD for angles and dihedrals
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2015-02-04
Berk Hess
Correct CUDA kernel energy flag
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2015-02-02
Roland Schulz
Fix FP exception in FE
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2015-02-02
Mark Abraham
Fix use of simd.h
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2015-01-29
Teemu Murtola
Add input file options that accept missing files
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2015-01-29
John Baxter
Removes some unnecessary ternary conditionals
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2015-01-24
Teemu Murtola
Improve selection error messages (use exceptions)
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2015-01-23
Mark Abraham
Change some listed-forces headers to be library-only
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2015-01-23
Teemu Murtola
Ignore test-only dependency cycles
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2015-01-20
Teemu Murtola
Make data file path search more reusable
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2015-01-20
Teemu Murtola
Convert forcefield search to C++
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2015-01-19
Erik Lindahl
Added two quotes from Julie Bernauer habilitation
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2015-01-19
James Barnett
Add tip4pew parameters to oplsaa.ff
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2015-01-19
Teemu Murtola
Remove AnalysisNeighborhood::setUseBoundingBox()
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2015-01-17
Teemu Murtola
Merge "Merge branch release-5-0"
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2015-01-16
Mark Abraham
Fix BlueGene/Q build with recent CMake
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2015-01-15
Berk Hess
Fix allocation issue with VV integrator
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2015-01-14
Mark Abraham
Fix and suppress warnings on BlueGene/Q
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2015-01-14
Mark Abraham
Refactor OpenMP initialization
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2015-01-14
Mark Abraham
Remove temporary symlinks from pre-5.0 tool names
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2015-01-09
Mark Abraham
Remove mdrun -testverlet
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2015-01-08
Teemu Murtola
Refactor logic for finding share/top/ files
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2015-01-08
Mark Abraham
Fix floating-point exception
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2015-01-08
Teemu Murtola
Closed some .xvg files that were being left open
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2015-01-07
Teemu Murtola
Split unit test init from testoptions.cpp
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2015-01-06
Teemu Murtola
Use analysis nbsearch for surface area calculation
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2015-01-05
Teemu Murtola
Minimal C++ replacement for rvec
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2015-01-05
Teemu Murtola
Clarify GMX_MPI management
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2015-01-05
Roland Schulz
Enable fp-exceptions
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2015-01-03
Teemu Murtola
Minor selection clarifications
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2015-01-03
Teemu Murtola
Fix crash with 'z of ...' within an expression
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2014-12-28
Teemu Murtola
Add helper for generic C++ command-line modules
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2014-12-22
Berk Hess
Fixed pbc=xy + 2 walls + Verlet scheme
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2014-12-22
Berk Hess
Fix bug FE + GPU + 2/3D domain decomposition
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2014-12-17
Teemu Murtola
Make 'gmx sasa' calculation thread-safe
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2014-12-17
Teemu Murtola
Remove some backwards-compatibility glue for Jenkins
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2014-12-17
Roland Schulz
Merge "Merge branch 'release-5-0'"
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2014-12-17
Roland Schulz
Fix cppcheck-1.67 warnings
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2014-12-16
Teemu Murtola
Make 'gmx sasa' volume computation translation-invariant
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2014-12-16
Mark Abraham
Move code to prepare for GPU interface rework
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2014-12-15
Roland Schulz
Fix NVML detection on Windows
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2014-12-15
Mark Abraham
Merge "Merge release-4-6 into release-5-0" into release-5-0
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2014-12-15
Teemu Murtola
Use new XML format with cppcheck
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2014-12-13
Roland Schulz
Use bitmask for bonded
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2014-12-13
David van der Spoel
Four new quotes from around the world.
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2014-12-13
Mark Abraham
Remove heuristic group-scheme neighbour-list updates
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2014-12-13
Mark Abraham
Fix latent bug in OpenMP initialization
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2014-12-11
Teemu Murtola
Convert gmx rdf to the C++ framework
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2014-12-10
Teemu Murtola
Fix misc. analysis neighborhood search issues
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2014-12-09
Teemu Murtola
Track locations for selection parsing products
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2014-12-09
Carsten Kutzner
Make tune_pme understand the "-nsteps" option. Fixes...
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2014-12-08
Mark Abraham
Merge "Merge release-5-0 into master"
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2014-12-08
Teemu Murtola
Rectangular grid for analysis nbsearch
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2014-12-08
Berk Hess
Fixed pull coord init with rate!=0, t_start!=0
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2014-12-08
Mark Abraham
Fix group-scheme bug with changing LJ parameters in FE
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2014-12-08
Berk Hess
Added PBC note to comm-mode=angular warning
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2014-12-08
Mark Abraham
Add basic GPU support for gmx tune-pme
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2014-12-06
Teemu Murtola
Simplify analysisdata parallelism model
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2014-12-05
Jiri Kraus
Add optional NVIDIA Management Library (NVML) Integration
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2014-12-05
Mark Abraham
Clean up non-PME part of ewald module
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2014-12-05
Mark Abraham
Make mdrun print the list of compatible GPUs
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2014-12-05
Mark Abraham
Created do_force_listed and moved code to the module
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2014-12-05
Berk Hess
Make domdec a proper module
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2014-12-05
Berk Hess
Clarified grompp pull error messages
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2014-12-05
Teemu Murtola
Improve selection parsing error reporting
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2014-12-05
Berk Hess
Avoid race on dvdl with Verlet+OpenMP+LINCS+FE+VV
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2014-12-05
Teemu Murtola
Non-periodic nbsearch with grid based on bounding box
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2014-12-04
Teemu Murtola
Move/add uncrustify documentation to dev manual
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2014-12-02
Teemu Murtola
Add 'gmx pairdist' tool as partial g_mindist replacement
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2014-12-02
Teemu Murtola
Analysis grid nbsearch for more cases
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2014-12-01
Berk Hess
Added warning for unnecessary soft-core
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2014-11-29
Teemu Murtola
Basic support for 'z of ...' selections
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2014-11-29
Szilárd Páll
Add kernel and compiler suport for CC 3.7 devices
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