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2012-07-05	David van der Spoel	Merge "Improve ProgramInfo and use it everywhere."	commit \| commitdiff \| tree
2012-07-05	Christoph Junghans	Merge "Fix most doxygen warnings."	commit \| commitdiff \| tree
2012-07-04	Roland Schulz	Remove unused FFT functions	commit \| commitdiff \| tree
2012-07-04	Teemu Murtola	Fix most doxygen warnings.	commit \| commitdiff \| tree
2012-07-03	Teemu Murtola	Improve ProgramInfo and use it everywhere.	commit \| commitdiff \| tree
2012-07-03	Teemu Murtola	Error/exception handling improvements.	commit \| commitdiff \| tree
2012-07-03	Teemu Murtola	Always build thread_mpi threading into libgromacs.	commit \| commitdiff \| tree
2012-06-27	Christoph Junghans	Merge "Make C++11 test quiet after the first cmake...	commit \| commitdiff \| tree
2012-06-27	Christoph Junghans	Merge "Use VERSION_LESS in the version detection code."	commit \| commitdiff \| tree
2012-06-27	Roland Schulz	Fix for boost version check added by 6b4c9bc	commit \| commitdiff \| tree
2012-06-26	Teemu Murtola	Update CPack package version.	commit \| commitdiff \| tree
2012-06-26	Roland Schulz	Merge "Make sure that found Boost version is new enough"	commit \| commitdiff \| tree
2012-06-26	Teemu Murtola	Merge "Merge remote-tracking branch 'origin/release...	commit \| commitdiff \| tree
2012-06-26	Christoph Junghans	Merge "Merge remote-tracking branch 'gerrit/release...	commit \| commitdiff \| tree
2012-06-24	Michael Shirts	Merge "Fix mdp_opt formatting of expanded ensemble...	commit \| commitdiff \| tree
2012-06-23	Roland Schulz	Fix illegal usage of MPI_Comm_create	commit \| commitdiff \| tree
2012-06-22	Christoph Junghans	Merge "Simple patch for openmm_wrapper.cpp" into release-4-6	commit \| commitdiff \| tree
2012-06-18	Martin Hoefling	gmx_dyecoupl: check selected groups from user	commit \| commitdiff \| tree
2012-06-15	Christoph Junghans	Merge "Remove unnecessary *-impl.h files."	commit \| commitdiff \| tree
2012-06-13	Teemu Murtola	Updates to selection online help.	commit \| commitdiff \| tree
2012-06-13	Teemu Murtola	Remove unnecessary *-impl.h files.	commit \| commitdiff \| tree
2012-06-13	Christoph Junghans	Merge "Merge branch 'release-4-6'"	commit \| commitdiff \| tree
2012-06-02	Sander Pronk	thread_mpi C++11 compatible mutex classes	commit \| commitdiff \| tree
2012-06-01	Christoph Junghans	Merge "Use External BLAS/LAPACK by default" into release-4-6	commit \| commitdiff \| tree
2012-06-01	Christoph Junghans	Merge "Replace our fftpack version with Numpy's version...	commit \| commitdiff \| tree
2012-06-01	Teemu Murtola	More config.h cleanup.	commit \| commitdiff \| tree
2012-05-29	Sander Pronk	Removed dependency on windows.h through commrec.h,...	commit \| commitdiff \| tree
2012-05-29	Christoph Junghans	Merge "Revised g_tune_pme" into release-4-6	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Continuing to fix threading on Cygwin" into...	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Improve gmx::test::CommandLine."	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Improve analysisdata reference checks."	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Move common test code to testutils."	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Simplify selection parsing methods signature."	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Option parsing through SelectionOptionManager."	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Simpler required selection input from a file."	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Split option code away from SelectionCollection."	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Merge release-4-6 (commit 'Ic142a690')"	commit \| commitdiff \| tree
2012-05-28	Christoph Junghans	Merge "Fixed 'g_ana select' broken by I8806b3e0."	commit \| commitdiff \| tree
2012-05-27	David van der Spoel	Merge "added explicit sqrtf to the float version of...	commit \| commitdiff \| tree
2012-05-25	Roland Schulz	Make load_vmd_library static	commit \| commitdiff \| tree
2012-05-25	Roland Schulz	Made all vmdio headers private	commit \| commitdiff \| tree
2012-05-25	Roland Schulz	Merge "fixed [dd] and [TT] typos in documentation of...	commit \| commitdiff \| tree
2012-05-25	David van der Spoel	Merge "grompp now retains the order of bonds converted...	commit \| commitdiff \| tree
2012-05-25	Szilárd Páll	Merge "Fix Clang 3.1 compile error"	commit \| commitdiff \| tree
2012-05-25	Christoph Junghans	Merge "Fix that sigaction mask wasn't zeroed" into...	commit \| commitdiff \| tree
2012-05-24	Teemu Murtola	Merge "Code cleanup to avoid name collisions" into...	commit \| commitdiff \| tree
2012-05-17	Teemu Murtola	Merge "Fixing more clang warnings" into release-4-6	commit \| commitdiff \| tree
2012-05-16	Roland Schulz	Merge "Merge 'origin/release-4-6' into master"	commit \| commitdiff \| tree
2012-05-15	Teemu Murtola	Merge "Membed code merge from release-4-6"	commit \| commitdiff \| tree
2012-05-09	Christoph Junghans	Merge "Backporting "moving membed to mdrun" from master...	commit \| commitdiff \| tree
2012-05-09	Christoph Junghans	Merge "Detect module name from symlinks."	commit \| commitdiff \| tree
2012-05-08	Christoph Junghans	Merge "Print list of modules with 'g_ana help'."	commit \| commitdiff \| tree
2012-05-08	Teemu Murtola	Merge "Remove g_luck."	commit \| commitdiff \| tree
2012-05-08	Roland Schulz	Merge "Generic handling for multiple cmd-line modules."	commit \| commitdiff \| tree
2012-05-08	Roland Schulz	Merge "Helper class for command-line utility tests."	commit \| commitdiff \| tree
2012-05-08	Roland Schulz	Merge "Print default file names for command-line help."	commit \| commitdiff \| tree
2012-05-08	Roland Schulz	Merge "Set project version to 5.0-dev."	commit \| commitdiff \| tree
2012-05-03	Christoph Junghans	Merge "Add shared test fixture for string tests."	commit \| commitdiff \| tree
2012-05-03	Christoph Junghans	Merge "Initial implementation of selection file input."	commit \| commitdiff \| tree
2012-05-03	Christoph Junghans	Merge "Move OptionInfo to abstractoption.cpp."	commit \| commitdiff \| tree
2012-05-03	Christoph Junghans	Merge "Implement markup substitution in command-line...	commit \| commitdiff \| tree
2012-05-03	Christoph Junghans	Merge "Rewrote command line help writer."	commit \| commitdiff \| tree
2012-05-03	David van der Spoel	Merge "Removed unused code from src/kernel/."	commit \| commitdiff \| tree
2012-05-02	Roland Schulz	Merge "Remove unused magic.h."	commit \| commitdiff \| tree
2012-05-02	Christoph Junghans	Merge "Remove unnecessary uses of gmx_header_config.h."	commit \| commitdiff \| tree
2012-05-02	Christoph Junghans	Merge "Add tests for PDB-specific selection methods."	commit \| commitdiff \| tree
2012-05-02	Teemu Murtola	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2012-05-01	Roland Schulz	Merge "Disable OpenMP for llvm-gcc 4.2.x" into release-4-6	commit \| commitdiff \| tree
2012-04-29	David van der Spoel	Merge "changed number of iatoms for F_SETTLE from 1...	commit \| commitdiff \| tree
2012-04-29	David van der Spoel	Merge "added support for graphs not starting at 0"...	commit \| commitdiff \| tree
2012-04-28	Teemu Murtola	Merge "Fix for sigaction" into release-4-6	commit \| commitdiff \| tree
2012-04-28	Mark Abraham	Merge "Remove checks based on Generator" into release...	commit \| commitdiff \| tree
2012-04-28	Mark Abraham	Merge "Fix version info generation for autoconf." into...	commit \| commitdiff \| tree
2012-04-26	Berk Hess	Merge "Merge release-4-5-patches into release-4-6"...	commit \| commitdiff \| tree
2012-04-26	David van der Spoel	Merge "[tools] g_sans - splited out fixes and added...	commit \| commitdiff \| tree
2012-04-26	Szilárd Páll	Merge "fixed initial COM motion removal with multiple...	commit \| commitdiff \| tree
2012-04-26	David van der Spoel	Merge "Various improvements to shell code" into release...	commit \| commitdiff \| tree
2012-04-24	Berk Hess	Merge "allow -append to overrule unsupported file locking...	commit \| commitdiff \| tree
2012-04-23	Roland Schulz	Merge "Fix 'make install'."	commit \| commitdiff \| tree
2012-04-23	Christoph Junghans	Merge "compiler flag fixes" into release-4-6	commit \| commitdiff \| tree
2012-04-22	Roland Schulz	Merge "enable command line option cheking in mdrun...	commit \| commitdiff \| tree
2012-04-18	Kasson	Merge "Merge fatalerror into utility."	commit \| commitdiff \| tree
2012-04-16	Roland Schulz	Merge "changed default for nstxout, nstvout and nstlog...	commit \| commitdiff \| tree
2012-04-16	Roland Schulz	Merge "Add documentation for template.cpp."	commit \| commitdiff \| tree
2012-04-16	Roland Schulz	Merge "Updated Doxygen comments for selections."	commit \| commitdiff \| tree
2012-04-16	Roland Schulz	Merge "checkpoint files now contain a double precision...	commit \| commitdiff \| tree
2012-04-16	David van der Spoel	Merge "Added support for dssp2.X with the -ver option...	commit \| commitdiff \| tree
2012-04-16	David van der Spoel	Merge "Expanded the help text regarding the -r2 and...	commit \| commitdiff \| tree
2012-04-16	Sander Pronk	Merge "Permit threads build on Cygwin" into release...	commit \| commitdiff \| tree
2012-04-14	Teemu Murtola	Merge "Clarified warning message" into release-4-5...	commit \| commitdiff \| tree
2012-04-14	Teemu Murtola	Merge "Clarified warning string" into release-4-5-patches	commit \| commitdiff \| tree
2012-04-09	Christoph Junghans	Merge "Documentation and error message enhancements...	commit \| commitdiff \| tree
2012-04-09	Christoph Junghans	Merge "Consolidated documentation of .mdp restraint...	commit \| commitdiff \| tree
2012-04-06	Christoph Junghans	Merge "Replaced a default parameter with separate method."	commit \| commitdiff \| tree
2012-04-06	Christoph Junghans	Merge "Improve selection interface (remove some pointers)."	commit \| commitdiff \| tree
2012-04-03	Roland Schulz	Merge "Fixes problems with g_msd and g_energy" into...	commit \| commitdiff \| tree
2012-04-02	David van der Spoel	Merge "Improved pdb2gmx error message" into release...	commit \| commitdiff \| tree
2012-04-01	Teemu Murtola	Merge "Fixing interprocedular clang analyzer warnings."	commit \| commitdiff \| tree
2012-03-28	Christoph Junghans	Merge "Resolving clang analyzer warnings in analysis...	commit \| commitdiff \| tree
2012-03-20	Christoph Junghans	Merge "Remove obsolete pointers in options handling."	commit \| commitdiff \| tree
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