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2019-10-22	Artem Zhmurov	Remove unnecessary CUDA stream synchronization calls	commit \| commitdiff \| tree
2019-10-22	Artem Zhmurov	Rename havePositionRestraints(...) to haveRestraints...	commit \| commitdiff \| tree
2019-10-21	Artem Zhmurov	Update the copyright message	commit \| commitdiff \| tree
2019-10-21	Artem Zhmurov	Add environment variable that changes the meaning of...	commit \| commitdiff \| tree
2019-10-18	Artem Zhmurov	Remove excessive H2D and D2H coordinates copies when...	commit \| commitdiff \| tree
2019-10-18	Artem Zhmurov	Remove excessive H2D and D2H copies of velocities when...	commit \| commitdiff \| tree
2019-10-16	Artem Zhmurov	Link GPU force producer and consumer tasks	commit \| commitdiff \| tree
2019-10-15	Artem Zhmurov	Fix the single-GPU update-constraints	commit \| commitdiff \| tree
2019-10-14	Artem Zhmurov	Add separate constructor to StatePropagatorDataGpu...	commit \| commitdiff \| tree
2019-10-12	Artem Zhmurov	Centralize management of forces ready on GPU event	commit \| commitdiff \| tree
2019-10-12	Artem Zhmurov	Change copy mode to Async in PME only rank	commit \| commitdiff \| tree
2019-10-12	Artem Zhmurov	Centralize management of coordinates ready on GPU event	commit \| commitdiff \| tree
2019-10-11	Artem Zhmurov	Wrong locality was used when ignoring the PME force...	commit \| commitdiff \| tree
2019-10-10	Artem Zhmurov	Add management for velocities and forces copy events...	commit \| commitdiff \| tree
2019-10-08	Artem Zhmurov	Fix for the recent nightly failure	commit \| commitdiff \| tree
2019-10-07	Artem Zhmurov	Pass the GPU streams to StatePropagatorDataGpu constructor	commit \| commitdiff \| tree
2019-10-07	Artem Zhmurov	Clean up the comments sections in Update-Constrain	commit \| commitdiff \| tree
2019-10-07	Artem Zhmurov	Fix a bug in GPU halo exchange initialization	commit \| commitdiff \| tree
2019-10-03	Artem Zhmurov	Fix the bug with offloading the PME-only ranks to GPU	commit \| commitdiff \| tree
2019-10-02	Artem Zhmurov	Eliminate D2D copy in update constraints	commit \| commitdiff \| tree
2019-10-01	Artem Zhmurov	StatePropagatorDataGpu object to manage GPU forces...	commit \| commitdiff \| tree
2019-09-27	Artem Zhmurov	Slight improvements to GPU update/constraints initialization	commit \| commitdiff \| tree
2019-09-27	Artem Zhmurov	Introduce stream management to GPU Update-Constraints	commit \| commitdiff \| tree
2019-09-22	Artem Zhmurov	Disable GPU update/constraints when neither PME nor...	commit \| commitdiff \| tree
2019-09-12	Artem Zhmurov	Change PaddedVector to PaddedHostVector for force CPU...	commit \| commitdiff \| tree
2019-09-11	Artem Zhmurov	Fix for the post-submit failure	commit \| commitdiff \| tree
2019-09-11	Artem Zhmurov	Decouple GPU force buffer management from buffer ops...	commit \| commitdiff \| tree
2019-09-11	Artem Zhmurov	Decouple coordinates buffer management from buffer...	commit \| commitdiff \| tree
2019-09-11	Artem Zhmurov	Reorganize PME code:	commit \| commitdiff \| tree
2019-09-10	Artem Zhmurov	Making DeviceBuffer availible in non-GPU builds	commit \| commitdiff \| tree
2019-09-03	Artem Zhmurov	Add Parrinello-Rahman pressure coupling to CUDA Leap...	commit \| commitdiff \| tree
2019-08-26	Artem Zhmurov	Add temperature coupling to CUDA Leap-Frog integrator	commit \| commitdiff \| tree
2019-08-25	Artem Zhmurov	Make use of recent changes to prepareKernelArguments...	commit \| commitdiff \| tree
2019-08-25	Artem Zhmurov	Misceleneous improvements to the Leap Frog tests	commit \| commitdiff \| tree
2019-08-14	Artem Zhmurov	BugFix: Zeroing the padded area of coordinates vectors...	commit \| commitdiff \| tree
2019-08-13	Artem Zhmurov	Make use of reference data in integrator tests	commit \| commitdiff \| tree
2019-08-13	Artem Zhmurov	Make use of reference data in SETTLE tests	commit \| commitdiff \| tree
2019-08-09	Artem Zhmurov	Prepare Update and Constraints for Domain Decomposition	commit \| commitdiff \| tree
2019-08-09	Artem Zhmurov	Refactoring of the SETTLE tests	commit \| commitdiff \| tree
2019-08-08	Artem Zhmurov	Refactor Leap-Frog tests and connect them to CPU version	commit \| commitdiff \| tree
2019-08-06	Artem Zhmurov	Fix for cmake lists in mdlib tests	commit \| commitdiff \| tree
2019-08-06	Artem Zhmurov	Remove PImpl scaffolding from CUDA version of Leap...	commit \| commitdiff \| tree
2019-07-31	Artem Zhmurov	Change the file structure in constraints tests	commit \| commitdiff \| tree
2019-07-31	Artem Zhmurov	Introduce function that checks if the computations...	commit \| commitdiff \| tree
2019-07-26	Artem Zhmurov	Remove PImpl scaffolding from CUDA version of SETTLE	commit \| commitdiff \| tree
2019-07-05	Artem Zhmurov	Remove PImpl scaffolding from CUDA version of LINCS	commit \| commitdiff \| tree
2019-07-04	Artem Zhmurov	Use reallocateDeviceBuffer(...) in CUDA version of...	commit \| commitdiff \| tree
2019-07-03	Artem Zhmurov	Early exit for CUDA versions of SETTLE and LINCS	commit \| commitdiff \| tree
2019-07-03	Artem Zhmurov	Memory management fixes in CUDA version of LINCS	commit \| commitdiff \| tree
2019-07-03	Artem Zhmurov	Combine CUDA Leap-Frog, LINCS and SETTLE. II.	commit \| commitdiff \| tree
2019-06-18	Artem Zhmurov	Combine CUDA Leap-Frog, LINCS and SETTLE. I.	commit \| commitdiff \| tree
2019-06-18	Artem Zhmurov	Bug fix: Constraints tests are not instantiated with...	commit \| commitdiff \| tree
2019-05-24	Artem Zhmurov	Clarify which of the main energy terms are printed.	commit \| commitdiff \| tree
2019-05-24	Artem Zhmurov	Clarify the EnergyOutput III	commit \| commitdiff \| tree
2019-05-24	Artem Zhmurov	Clarify the EnergyOutput II	commit \| commitdiff \| tree
2019-05-13	Artem Zhmurov	Clarify the EnergyOutput I	commit \| commitdiff \| tree
2019-05-12	Artem Zhmurov	CUDA version of Leap-Frog integrator with basic tests	commit \| commitdiff \| tree
2019-05-06	Artem Zhmurov	Fixing minor memory issues in MDLib	commit \| commitdiff \| tree
2019-05-02	Artem Zhmurov	Use test with parameters for EnergyOutput	commit \| commitdiff \| tree
2019-04-30	Artem Zhmurov	CUDA version of SETTLE algorithm with basic tests	commit \| commitdiff \| tree
2019-04-29	Artem Zhmurov	Fix for the CUDA version of LINCS	commit \| commitdiff \| tree
2019-04-28	Artem Zhmurov	CUDA version of LINCS constraints.	commit \| commitdiff \| tree
2019-04-25	Artem Zhmurov	Improvements for energy output test.	commit \| commitdiff \| tree
2019-04-16	Artem Zhmurov	Fix for the memory access error in constraints test.	commit \| commitdiff \| tree
2019-04-04	Artem Zhmurov	Remove isPressureCouplingStep(...)	commit \| commitdiff \| tree
2019-04-04	Artem Zhmurov	Remove isTemperatureCouplingStep(...)	commit \| commitdiff \| tree
2019-03-28	Artem Zhmurov	GPU naming conventions	commit \| commitdiff \| tree
2019-03-25	Artem Zhmurov	Remove unused headers	commit \| commitdiff \| tree
2019-03-13	Artem Zhmurov	Basic routines to handle periodic boundary.	commit \| commitdiff \| tree
2019-02-21	Artem Zhmurov	Test for LINCS and SHAKE constraints.	commit \| commitdiff \| tree
2019-02-19	Artem Zhmurov	PBC setup for GPU is moved into pbcutils.	commit \| commitdiff \| tree
2019-02-13	Artem Zhmurov	Ignore Visual Studio Code metadata.	commit \| commitdiff \| tree
2018-12-27	Artem Zhmurov	The tests for LINCS and SHAKE constraints.	commit \| commitdiff \| tree

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