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Add gmx dump option for printing parameters
2016-10-29
Berk Hess
Add gmx dump option for printing parameters
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2016-10-21
Teemu Murtola
Clean up option (default) value access
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2016-10-15
Teemu Murtola
Improved address sanitizer support
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2016-10-15
Teemu Murtola
Work around memory leak in t_state
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2016-10-15
Teemu Murtola
Fix most memory leaks recently introduced
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2016-10-14
David van der Spoel
Fixes some memory leaks associated with testing applied...
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2016-10-11
Teemu Murtola
Support concurrent t_topology and gmx_mtop_t use
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2016-10-05
Teemu Murtola
Support different key matching in KeyValueTreeTransform
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2016-10-05
Teemu Murtola
Merge "Merge branch release-5-1 into release-2016"...
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2016-09-24
Teemu Murtola
Fix default nice level in mdrun-only build
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2016-09-16
Berk Hess
Fixed unused variables in domdec.cpp
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2016-09-07
Teemu Murtola
Clean up CTest test management
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2016-08-05
Erik Lindahl
Fix proper relative tolerance checking in testutils
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2016-08-04
Teemu Murtola
Fix/improve doc links in template/README
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2016-08-01
Teemu Murtola
Function to split delimited strings
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2016-07-14
Teemu Murtola
Use newer gcc for coverage
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2016-07-01
Mark Abraham
Fix use of _POSIX_THREAD*
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2016-06-30
Teemu Murtola
Extract string parsing routines to utility
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2016-06-28
Teemu Murtola
Split up compare.*
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2016-06-27
Teemu Murtola
Factory for creating t_inputrec
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2016-06-04
Erik Lindahl
Check number of items read in mdp statements
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2016-06-01
Teemu Murtola
Use C++ replacement for md_logging.*
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2016-06-01
Teemu Murtola
Basic C++ logging interface
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2016-05-31
Teemu Murtola
Improve make_ndx help text
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2016-05-24
Teemu Murtola
Tests for single-rank thread affinity setting
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2016-05-21
Teemu Murtola
Pass number of local threads to thread affinity
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2016-05-21
Teemu Murtola
Allow creating mock HardwareTopology objects
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2016-05-21
Teemu Murtola
Use only HardwareTopology for thread affinity
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2016-05-21
Teemu Murtola
Merge branch release-2016
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2016-05-21
Teemu Murtola
Bump version numbers for 2017 development
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2016-05-08
Teemu Murtola
Support for OpenCL CI builds
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2016-05-05
Teemu Murtola
Merge branch release-5-1
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2016-05-05
Teemu Murtola
Make Sphinx build silent for version 1.3+
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2016-05-05
Szilárd Páll
Remove CUDA host compiler consistency checks
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2016-05-05
Erik Lindahl
Fix SIMD detection on AMD AVX CPUs w/o fma (master)
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2016-05-05
Erik Lindahl
Avoid allocating heap memory for tabulated distribution
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2016-05-03
Teemu Murtola
Mark optional input/output files in gmx order
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2016-04-27
Teemu Murtola
Merge "Merge branch release-5-1"
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2016-04-26
Roland Schulz
Fix numerically unstable Gaussian test
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2016-04-15
Roland Schulz
Remove idioms deprecated in C++11
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2016-03-31
Mark Abraham
Add test and improved docs for custom checkSequence
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2016-03-28
Teemu Murtola
More support for release workflow
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2016-03-26
Teemu Murtola
Ignore empty GMXLIB
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2016-03-17
Szilárd Páll
Fixed OpenCL e/fshift clear kernel first invocation
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2016-03-14
Teemu Murtola
Add tests for empty strings in refdata
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2016-03-13
Teemu Murtola
Support replacing solvent in insert-molecules
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2016-01-12
Teemu Murtola
Move flags out of t_trxframe
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2016-01-12
Teemu Murtola
Remove historical times from t_trxframe
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2016-01-10
Teemu Murtola
Support trajectory analysis with any atom subset
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2016-01-10
Teemu Murtola
Support frames with atom subsets in selections
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2016-01-10
Teemu Murtola
Do not warn about missing OpenMP with GMX_GPU=OFF
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2015-12-31
Teemu Murtola
Report used defines in check-source
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2015-12-17
Berk Hess
Removed topology pointers from DD struct
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2015-12-14
Teemu Murtola
Install baseversion.h
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2015-12-12
Teemu Murtola
Move ifunc.* to topology/
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2015-12-09
Teemu Murtola
Split txtdump.*, part 2
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2015-12-03
Teemu Murtola
Move filenm.* to commandline
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2015-11-30
Teemu Murtola
Remove topology -> mdtypes dependency
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2015-11-30
Teemu Murtola
Remove obsolete references to legacyheaders/
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2015-11-30
Teemu Murtola
Merge remaining legacyheaders/types/ to mdtypes/
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2015-11-30
Teemu Murtola
Move ifunc.h to gmxlib
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2015-11-30
Teemu Murtola
Move force_flags.h to mdlib/
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2015-11-30
Teemu Murtola
libgromacs CMake source file management cleanup
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2015-11-30
Teemu Murtola
Move hardware info structs to hardware/
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2015-11-22
Teemu Murtola
Remove correlationfunctions -> mdtypes dependency
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2015-11-21
Teemu Murtola
Use v.data() instead of &v[0] for C interop
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2015-11-15
Mark Abraham
Move responsibility for FFT description string
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2015-11-14
Mark Abraham
Moved all cool stuff to its own file
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2015-11-13
Teemu Murtola
Move gmx_detect_hardware.h to gmxlib/
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2015-11-11
Teemu Murtola
Support inspecting expected error messages in tests
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2015-11-07
Teemu Murtola
Remove misc. copyrite.h functions
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2015-11-07
Teemu Murtola
Move gmx_omp_nthreads.h and gmx_thread_affinity.h to...
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2015-11-06
Teemu Murtola
Move PBC enums to pbc.*
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2015-11-06
Teemu Murtola
Move ns.h and nsgrid.h to mdlib/
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2015-11-05
Mark Abraham
Move DD hashing to domdec module
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2015-11-03
Berk Hess
Removed nbnxn kernel blendv optimization
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2015-11-01
Teemu Murtola
Remove remaining scoped_ptrs
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2015-11-01
Teemu Murtola
Remove more scoped_ptr uses
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2015-10-27
Teemu Murtola
Additional checks for selection input
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2015-10-26
Teemu Murtola
Remove some boost::scoped_ptr uses
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2015-10-24
Teemu Murtola
Change some shared_ptrs back to unique_ptr
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2015-10-14
Teemu Murtola
Make bash completions work with bash --posix
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2015-10-03
Teemu Murtola
Silence Python detection on CMake rerun
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2015-10-03
Teemu Murtola
Merge branch release-5-1 into master
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2015-10-03
Teemu Murtola
Minor cleanup in gmx insert-molecules
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2015-10-03
Teemu Murtola
Use AtomsBuilder in gmx insert-molecules
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2015-10-03
Teemu Murtola
Use more std::vector for solvate/insert-molecules
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2015-10-03
Teemu Murtola
Use std::vector for makeExclusionDistances()
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2015-10-03
Teemu Murtola
Remove SelectionOptionBehavior::useDefaultGroups
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2015-10-02
David van der Spoel
Removed output_env_t, now using gmx_output_env_t *...
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2015-10-01
Teemu Murtola
Move mdoutf and trajectory_writing to mdlib
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2015-09-27
David van der Spoel
Removed types/forcerec.h from typedefs.h
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2015-09-25
Teemu Murtola
More legacyheaders to gmxlib/mdlib
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2015-09-25
Teemu Murtola
Move some headers from legacyheaders to mdlib/gmxlib
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2015-09-25
Teemu Murtola
Remove types/shellfc.h
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2015-09-19
Teemu Murtola
Convert calc_verletbuf.c to C++
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2015-09-18
Teemu Murtola
Remove unused macros.h includes (fix build)
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2015-09-09
Rossen Apostolov
Converted topology to C++.
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2015-09-05
James W. Barnett
Validate strings converted to numbers in mdp files
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2015-07-25
Teemu Murtola
Remove Options::isSet()
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