From b6b93061b127e3e69e677f0753db2fd8d3ae54e7 Mon Sep 17 00:00:00 2001 From: Teemu Murtola Date: Sun, 6 Oct 2013 08:06:01 +0300 Subject: [PATCH] Reformat existing LGPL copyright notices. Update files that already had the new-style LGPL copyright notice to match what the new copyright script expects (slightly different author list). Generated kernels need a somewhat separate approach, so skipped in this change. Applied with git ls-tree --name-only -r HEAD | git check-attr filter --stdin | \ sed -Ene '/(copyright|uncrustify)$/ {s/:.*//;p;}' | \ grep -v '_kernel_' | xargs admin/copyright.py --update-header with the .gitattributes and copyright.py from Ie21365a. Also adapt COPYING to match more or less the contents of the file in release-4-6. Part of #818. Change-Id: I2885b36f65ac3599a7dfb66efdb7faed55fa9557 --- COPYING | 625 ++++++++++++++++-- admin/git-pre-commit | 6 +- admin/includedeps.py | 6 +- cmake/FindGSL.cmake | 10 +- cmake/Toolchain-Fujitsu-Sparc64-mpi.cmake | 8 +- cmake/Toolchain-Fujitsu-Sparc64.cmake | 8 +- cmake/gmxGenerateVersionInfo.cmake | 7 +- cmake/gmxManageBlueGene.cmake | 6 +- cmake/gmxOptionUtilities.cmake | 7 +- cmake/gmxTestAVXMaskload.cmake | 8 +- doxygen/CMakeLists.txt | 6 +- share/CMakeLists.txt | 6 +- share/html/BuildHtmlHelp.cmake | 6 +- share/html/CMakeLists.txt | 6 +- share/man/CMakeLists.txt | 6 +- share/template/CMakeLists.txt | 6 +- share/template/cmake/FindGROMACS.cmakein | 10 +- share/template/template.cpp | 6 +- src/buildinfo.h.cmakein | 6 +- src/external/gmock-1.6.0/CMakeLists.txt | 6 +- src/gromacs/CMakeLists.txt | 6 +- src/gromacs/analysisdata.h | 6 +- src/gromacs/analysisdata/CMakeLists.txt | 6 +- src/gromacs/analysisdata/abstractdata.cpp | 6 +- src/gromacs/analysisdata/abstractdata.h | 6 +- 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| 6 +- src/gromacs/options/options.cpp | 6 +- src/gromacs/options/options.h | 6 +- src/gromacs/options/optionsassigner.cpp | 6 +- src/gromacs/options/optionsassigner.h | 6 +- src/gromacs/options/optionstoragetemplate.h | 6 +- src/gromacs/options/optionsvisitor.cpp | 6 +- src/gromacs/options/optionsvisitor.h | 6 +- src/gromacs/options/tests/CMakeLists.txt | 6 +- .../options/tests/abstractoptionstorage.cpp | 6 +- src/gromacs/options/tests/filenameoption.cpp | 6 +- src/gromacs/options/tests/option.cpp | 6 +- src/gromacs/options/tests/optionsassigner.cpp | 6 +- src/gromacs/options/tests/timeunitmanager.cpp | 6 +- src/gromacs/options/timeunitmanager.cpp | 6 +- src/gromacs/options/timeunitmanager.h | 6 +- src/gromacs/selection.h | 6 +- src/gromacs/selection/CMakeLists.txt | 6 +- src/gromacs/selection/centerofmass.cpp | 6 +- src/gromacs/selection/centerofmass.h | 6 +- src/gromacs/selection/compiler.cpp | 6 +- src/gromacs/selection/compiler.h | 6 +- src/gromacs/selection/evaluate.cpp | 6 +- src/gromacs/selection/evaluate.h | 6 +- src/gromacs/selection/indexutil.cpp | 6 +- src/gromacs/selection/indexutil.h | 6 +- src/gromacs/selection/keywords.h | 6 +- src/gromacs/selection/mempool.cpp | 6 +- src/gromacs/selection/mempool.h | 6 +- src/gromacs/selection/nbsearch.cpp | 6 +- src/gromacs/selection/nbsearch.h | 6 +- src/gromacs/selection/params.cpp | 6 +- src/gromacs/selection/parser.cpp | 6 +- src/gromacs/selection/parser.h | 6 +- src/gromacs/selection/parser.y | 6 +- src/gromacs/selection/parser_internal.h | 6 +- src/gromacs/selection/parsetree.cpp | 6 +- src/gromacs/selection/parsetree.h | 6 +- src/gromacs/selection/poscalc.cpp | 6 +- src/gromacs/selection/poscalc.h | 6 +- src/gromacs/selection/position.cpp | 6 +- src/gromacs/selection/position.h | 6 +- src/gromacs/selection/scanner.cpp | 6 +- src/gromacs/selection/scanner.h | 6 +- src/gromacs/selection/scanner.l | 6 +- src/gromacs/selection/scanner_internal.cpp | 6 +- src/gromacs/selection/scanner_internal.h | 6 +- src/gromacs/selection/selection.cpp | 6 +- src/gromacs/selection/selection.h | 6 +- .../selection/selectioncollection-impl.h | 6 +- src/gromacs/selection/selectioncollection.cpp | 6 +- src/gromacs/selection/selectioncollection.h | 6 +- src/gromacs/selection/selectionenums.h | 6 +- src/gromacs/selection/selectionfileoption.h | 6 +- .../selection/selectionfileoptionstorage.h | 6 +- src/gromacs/selection/selectionoption.cpp | 6 +- src/gromacs/selection/selectionoption.h | 6 +- .../selection/selectionoptionmanager.cpp | 6 +- .../selection/selectionoptionmanager.h | 6 +- .../selection/selectionoptionstorage.h | 6 +- src/gromacs/selection/selelem.cpp | 6 +- src/gromacs/selection/selelem.h | 6 +- src/gromacs/selection/selhelp.cpp | 6 +- src/gromacs/selection/selhelp.h | 6 +- src/gromacs/selection/selmethod.cpp | 6 +- src/gromacs/selection/selmethod.h | 6 +- src/gromacs/selection/selparam.h | 6 +- src/gromacs/selection/selvalue.cpp | 6 +- src/gromacs/selection/selvalue.h | 6 +- src/gromacs/selection/sm_compare.cpp | 6 +- src/gromacs/selection/sm_distance.cpp | 6 +- src/gromacs/selection/sm_insolidangle.cpp | 6 +- src/gromacs/selection/sm_keywords.cpp | 6 +- src/gromacs/selection/sm_merge.cpp | 6 +- src/gromacs/selection/sm_permute.cpp | 6 +- src/gromacs/selection/sm_position.cpp | 6 +- src/gromacs/selection/sm_same.cpp | 6 +- src/gromacs/selection/sm_simple.cpp | 6 +- src/gromacs/selection/symrec.cpp | 6 +- src/gromacs/selection/symrec.h | 6 +- src/gromacs/selection/tests/CMakeLists.txt | 6 +- src/gromacs/selection/tests/gensphere.py | 6 +- src/gromacs/selection/tests/indexutil.cpp | 6 +- src/gromacs/selection/tests/nbsearch.cpp | 6 +- src/gromacs/selection/tests/poscalc.cpp | 6 +- .../selection/tests/selectioncollection.cpp | 6 +- .../selection/tests/selectionoption.cpp | 6 +- src/gromacs/selection/tests/toputils.cpp | 6 +- src/gromacs/selection/tests/toputils.h | 6 +- src/gromacs/timing/CMakeLists.txt | 6 +- src/gromacs/trajectoryanalysis.h | 6 +- src/gromacs/trajectoryanalysis/CMakeLists.txt | 6 +- .../trajectoryanalysis/analysismodule.cpp | 6 +- .../trajectoryanalysis/analysismodule.h | 6 +- .../analysissettings-impl.h | 6 +- .../trajectoryanalysis/analysissettings.cpp | 6 +- .../trajectoryanalysis/analysissettings.h | 6 +- .../trajectoryanalysis/cmdlinerunner.cpp | 6 +- .../trajectoryanalysis/cmdlinerunner.h | 6 +- src/gromacs/trajectoryanalysis/modules.cpp | 6 +- src/gromacs/trajectoryanalysis/modules.h | 6 +- .../trajectoryanalysis/modules/angle.cpp | 6 +- .../trajectoryanalysis/modules/angle.h | 6 +- .../trajectoryanalysis/modules/distance.cpp | 6 +- .../trajectoryanalysis/modules/distance.h | 6 +- .../trajectoryanalysis/modules/freevolume.cpp | 6 +- .../trajectoryanalysis/modules/freevolume.h | 6 +- .../trajectoryanalysis/modules/select.cpp | 6 +- .../trajectoryanalysis/modules/select.h | 6 +- .../trajectoryanalysis/runnercommon.cpp | 6 +- src/gromacs/trajectoryanalysis/runnercommon.h | 6 +- .../trajectoryanalysis/tests/CMakeLists.txt | 6 +- .../trajectoryanalysis/tests/angle.cpp | 6 +- .../trajectoryanalysis/tests/distance.cpp | 6 +- .../trajectoryanalysis/tests/freevolume.cpp | 6 +- .../trajectoryanalysis/tests/moduletest.cpp | 6 +- .../trajectoryanalysis/tests/moduletest.h | 6 +- .../trajectoryanalysis/tests/select.cpp | 6 +- .../tests/test_selection.cpp | 6 +- src/gromacs/utility.h | 6 +- src/gromacs/utility/CMakeLists.txt | 6 +- src/gromacs/utility/arrayref.h | 6 +- src/gromacs/utility/common.h | 6 +- src/gromacs/utility/errorcodes.cpp | 6 +- src/gromacs/utility/errorcodes.h | 6 +- src/gromacs/utility/errorformat.cpp | 6 +- src/gromacs/utility/errorformat.h | 6 +- src/gromacs/utility/exceptions.cpp | 6 +- src/gromacs/utility/exceptions.h | 6 +- src/gromacs/utility/file.cpp | 6 +- src/gromacs/utility/file.h | 6 +- src/gromacs/utility/flags.h | 6 +- src/gromacs/utility/gitversion.c.cmakein | 6 +- src/gromacs/utility/gitversion.h | 6 +- src/gromacs/utility/gmx_header_config.h | 6 +- .../utility/gmx_header_config_gen.h.cmakein | 6 +- src/gromacs/utility/gmxassert.cpp | 6 +- src/gromacs/utility/gmxassert.h | 6 +- src/gromacs/utility/gmxmpi.h | 6 +- src/gromacs/utility/gmxregex.cpp | 6 +- src/gromacs/utility/gmxregex.h | 6 +- src/gromacs/utility/init.cpp | 6 +- src/gromacs/utility/init.h | 6 +- .../utility/messagestringcollector.cpp | 6 +- src/gromacs/utility/messagestringcollector.h | 6 +- src/gromacs/utility/path.cpp | 6 +- src/gromacs/utility/path.h | 6 +- src/gromacs/utility/programinfo.cpp | 6 +- src/gromacs/utility/programinfo.h | 6 +- src/gromacs/utility/stringutil.cpp | 6 +- src/gromacs/utility/stringutil.h | 6 +- src/gromacs/utility/tests/CMakeLists.txt | 6 +- src/gromacs/utility/tests/programinfo.cpp | 6 +- src/gromacs/utility/tests/stringutil.cpp | 6 +- src/gromacs/utility/uniqueptr.h | 6 +- src/gromacs/version.h.cmakein | 8 +- src/programs/CMakeLists.txt | 6 +- src/programs/CreateLinks.cmake.cmakein | 6 +- src/programs/gmx/gmx.cpp | 6 +- src/programs/gmx/legacymodules.cpp | 6 +- src/programs/gmx/legacymodules.h | 6 +- src/programs/gmx/tomorse.h | 9 +- src/programs/mdrun/mdrun_main.h | 6 +- src/programs/mdrun_main.cpp | 6 +- src/testutils/CMakeLists.txt | 6 +- src/testutils/TestMacros.cmake | 6 +- src/testutils/cmdlinetest.cpp | 6 +- src/testutils/cmdlinetest.h | 6 +- src/testutils/datatest.cpp | 6 +- src/testutils/datatest.h | 6 +- src/testutils/mock_datamodule.cpp | 6 +- src/testutils/mock_datamodule.h | 6 +- src/testutils/mock_helptopic.cpp | 6 +- src/testutils/mock_helptopic.h | 6 +- src/testutils/refdata.cpp | 6 +- src/testutils/refdata.h | 6 +- src/testutils/stringtest.cpp | 6 +- src/testutils/stringtest.h | 6 +- src/testutils/testasserts.h | 6 +- src/testutils/testexceptions.h | 6 +- src/testutils/testfilemanager.cpp | 6 +- src/testutils/testfilemanager.h | 6 +- src/testutils/testoptions.cpp | 6 +- src/testutils/testoptions.h | 6 +- src/testutils/tests/CMakeLists.txt | 6 +- src/testutils/tests/refdata.cpp | 6 +- src/testutils/unittest_main.cpp | 6 +- tests/CMakeLists.txt | 8 +- tests/CppCheck.cmake | 7 +- 319 files changed, 1552 insertions(+), 1045 deletions(-) diff --git a/COPYING b/COPYING index 81a79a521f..066181c6cf 100644 --- a/COPYING +++ b/COPYING @@ -1,32 +1,552 @@ -GROMACS is free software, distributed under the GNU General Public License -(GPL) Version 2. 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See the GNU + Lesser General Public License for more details. + + You should have received a copy of the GNU Lesser General Public + License along with this library; if not, write to the Free Software + Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA + +Also add information on how to contact you by electronic and paper mail. + +You should also get your employer (if you work as a programmer) or your +school, if any, to sign a "copyright disclaimer" for the library, if +necessary. Here is a sample; alter the names: + + Yoyodyne, Inc., hereby disclaims all copyright interest in the + library `Frob' (a library for tweaking knobs) written by James Random Hacker. + + , 1 April 1990 + Ty Coon, President of Vice + +That's all there is to it! + +============================================ GNU GENERAL PUBLIC LICENSE Version 2, June 1991 - Copyright (C) 1989, 1991 Free Software Foundation, Inc. - 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA - - Everyone is permitted to copy and distribute verbatim copies - of this license document, but changing it is not allowed. + Copyright (C) 1989, 1991 Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. Preamble @@ -37,7 +557,7 @@ software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by -the GNU Library General Public License instead.) You can apply it to +the GNU Lesser General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not @@ -313,7 +833,7 @@ convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. - Copyright (C) 19yy + Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -325,17 +845,16 @@ the "copyright" line and a pointer to where the full notice is found. MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. - You should have received a copy of the GNU General Public License - along with this program; if not, write to the Free Software - Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA - + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: - Gnomovision version 69, Copyright (C) 19yy name of author + Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. @@ -358,14 +877,14 @@ necessary. Here is a sample; alter the names: This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the -library. If this is what you want to do, use the GNU Library General +library. If this is what you want to do, use the GNU Lesser General Public License instead of this License. - -2. Trajectory file reading using VMD plugins +2. Trajectory file reading using VMD plugins ============================================ -Files: src/external/vmd_molfile - src/gromacs/gmxlib/vmdio.c + + Files: src/external/vmd_molfile/ + src/gromacs/fileio/vmdio.c (C) Copyright 1995-2009 The Board of Trustees of the University of Illinois @@ -404,7 +923,8 @@ OTHER DEALINGS WITH THE SOFTWARE. 3. Internal FFT (ffpack) ======================== -File: src/mdlib/fftpack.c + + Files: src/external/fftpack/fftpack.c Copyright (c) 2005-2011, NumPy Developers. All rights reserved. @@ -441,11 +961,12 @@ fftpack.c : A set of FFT routines in C. Algorithmically based on Fortran-77 FFTPACK by Paul N. Swarztrauber (Version 4, 1985). 4. The memtestG80 library -========================= -Files: src/gromacs/gmxlib/gpu_utils/memtestG80_core.* +========================= -The memtestG80 library, written by Imran Haque, is Copyright 2009 Stanford University, -covered by the LGPL license. It may be used under the following terms: + Files: src/gromacs/gmxlib/gpu_utils/memtestG80_core.* + +The memtestG80 library, written by Imran Haque, is Copyright 2009 Stanford University, +covered by the LGPL license. It may be used under the following terms: IN NO EVENT SHALL STANFORD UNIVERSITY BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF @@ -471,8 +992,9 @@ available at http://www.gnu.org/licenses/lgpl-3.0.txt. 5. thread_mpi ============= -Files: src/gromacs/legacyheaders/thread_mpi - src/gromacs/gmxlib/thread_mpi + + Files: src/gromacs/legacyheaders/thread_mpi/ + src/gromacs/gmxlib/thread_mpi/ Copyright (c) 2009-2012, Sander Pronk & Erik Lindahl. All rights reserved. @@ -503,20 +1025,19 @@ If you want to redistribute modifications, please consider that scientific software is very special. Version control is crucial - bugs must be traceable. We will be happy to consider code for inclusion in the official distribution, but derived work should not -be called official thread_mpi. +be called official thread_mpi. 6. Blas ======= -Files: src/gromacs/linearalgebra/gmx_blas These files are semi-automatic translations by f2c from the original netlib BLAS library. The source has been modified to (mostly) use modern C formatting, and to get rid of compiler warnings. Any errors in doing this should be blamed on the Gromacs developers, and not the reference BLAS implementation. -The reference BLAS implementation is available from http://www.netlib.org/blas +The reference BLAS implementation is available from http://www.netlib.org/blas -BLAS does not come with a formal named "license", but a general statement that +BLAS does not come with a formal named "license", but a general statement that "The reference BLAS is a freely-available software package. It is available from netlib via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software @@ -532,14 +1053,13 @@ Erik Lindahl, 2008-10-07. 7. Lapack ========= -Files: src/gromacs/linearalgebra/gmx_lapack These files are semi-automatic translations by f2c from the original netlib LAPACK library. The source has been modified to (mostly) use modern C formatting, and to get rid of compiler warnings. Any errors in doing this should be blamed on the Gromacs developers, and not the reference LAPACK implementation. -The reference LAPACK implementation is available from http://www.netlib.org/lapack +The reference LAPACK implementation is available from http://www.netlib.org/lapack LAPACK does not come with a formal named "license", but a general statement saying: @@ -556,10 +1076,10 @@ better idea to use the full reference implementation. Erik Lindahl, 2008-10-07. - 8. Subset of Boost C++ library ============================== -Files: src/external/boost/boost/* + + Files: src/external/boost/boost/* Boost Software License - Version 1.0 - August 17th, 2003 @@ -585,9 +1105,10 @@ FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - 9. Google Test and Google Mock +9. Google Test and Google Mock =============================== -Files: src/external/gmock-1.6.0/* + + Files: src/external/gmock-1.6.0/* Copyright 2008, Google Inc. All rights reserved. diff --git a/admin/git-pre-commit b/admin/git-pre-commit index 10f6ef9bf8..4fbbf0b89b 100755 --- a/admin/git-pre-commit +++ b/admin/git-pre-commit @@ -3,9 +3,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/admin/includedeps.py b/admin/includedeps.py index 0e2b11d83e..01b8233d58 100755 --- a/admin/includedeps.py +++ b/admin/includedeps.py @@ -3,9 +3,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/cmake/FindGSL.cmake b/cmake/FindGSL.cmake index d805aa6b91..2ab1d6c4a6 100644 --- a/cmake/FindGSL.cmake +++ b/cmake/FindGSL.cmake @@ -2,10 +2,10 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2009-2011, by the VOTCA Development Team (http://www.votca.org) -# Copyright (c) 2012,2013 by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Copyright (c) 2012,2013, by the GROMACS development team, led by +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License @@ -32,7 +32,7 @@ # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. -# + # - Find gsl # Find the native GSL headers and libraries. # diff --git a/cmake/Toolchain-Fujitsu-Sparc64-mpi.cmake b/cmake/Toolchain-Fujitsu-Sparc64-mpi.cmake index 14c58b9ac6..fa01042b00 100644 --- a/cmake/Toolchain-Fujitsu-Sparc64-mpi.cmake +++ b/cmake/Toolchain-Fujitsu-Sparc64-mpi.cmake @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License @@ -31,7 +31,7 @@ # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. -# + # the name of the target operating system set(CMAKE_SYSTEM_NAME Linux CACHE STRING "Cross-compiling for Fujitsu Sparc64") diff --git a/cmake/Toolchain-Fujitsu-Sparc64.cmake b/cmake/Toolchain-Fujitsu-Sparc64.cmake index c76c4d9ac0..15bdc0249d 100644 --- a/cmake/Toolchain-Fujitsu-Sparc64.cmake +++ b/cmake/Toolchain-Fujitsu-Sparc64.cmake @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License @@ -31,7 +31,7 @@ # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. -# + # the name of the target operating system set(CMAKE_SYSTEM_NAME Linux CACHE STRING "Cross-compiling for Fujitsu Sparc64") diff --git a/cmake/gmxGenerateVersionInfo.cmake b/cmake/gmxGenerateVersionInfo.cmake index 90e3752aca..bbf030400c 100644 --- a/cmake/gmxGenerateVersionInfo.cmake +++ b/cmake/gmxGenerateVersionInfo.cmake @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License @@ -31,6 +31,7 @@ # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. + # Generate Gromacs development build version information. # This script generates version information for a build from a development diff --git a/cmake/gmxManageBlueGene.cmake b/cmake/gmxManageBlueGene.cmake index fb367c2b94..01396fcc28 100644 --- a/cmake/gmxManageBlueGene.cmake +++ b/cmake/gmxManageBlueGene.cmake @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/cmake/gmxOptionUtilities.cmake b/cmake/gmxOptionUtilities.cmake index 26dc688201..1cbf7c89aa 100644 --- a/cmake/gmxOptionUtilities.cmake +++ b/cmake/gmxOptionUtilities.cmake @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License @@ -32,7 +32,6 @@ # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. -# # Helper functions for managing more complex options # diff --git a/cmake/gmxTestAVXMaskload.cmake b/cmake/gmxTestAVXMaskload.cmake index a80920dfc2..5a4a490125 100644 --- a/cmake/gmxTestAVXMaskload.cmake +++ b/cmake/gmxTestAVXMaskload.cmake @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License @@ -31,7 +31,7 @@ # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. -# + # GMX_TEST_AVX_GCC_MASKLOAD_BUG(VARIABLE) # # VARIABLE will be set if the compiler is a buggy version diff --git a/doxygen/CMakeLists.txt b/doxygen/CMakeLists.txt index 979d0f0f48..8d71f4e642 100644 --- a/doxygen/CMakeLists.txt +++ b/doxygen/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/share/CMakeLists.txt b/share/CMakeLists.txt index 7056506dc9..ced9368502 100644 --- a/share/CMakeLists.txt +++ b/share/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/share/html/BuildHtmlHelp.cmake b/share/html/BuildHtmlHelp.cmake index 54d45c8805..f61b4dfc7a 100644 --- a/share/html/BuildHtmlHelp.cmake +++ b/share/html/BuildHtmlHelp.cmake @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/share/html/CMakeLists.txt b/share/html/CMakeLists.txt index 5bffbf648b..b08e5a4760 100644 --- a/share/html/CMakeLists.txt +++ b/share/html/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/share/man/CMakeLists.txt b/share/man/CMakeLists.txt index d6c2f133eb..0f347dbc71 100644 --- a/share/man/CMakeLists.txt +++ b/share/man/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/share/template/CMakeLists.txt b/share/template/CMakeLists.txt index 1a0ef30654..dbc671e398 100644 --- a/share/template/CMakeLists.txt +++ b/share/template/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2011,2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/share/template/cmake/FindGROMACS.cmakein b/share/template/cmake/FindGROMACS.cmakein index 2000a038c3..f5da0ab1bd 100644 --- a/share/template/cmake/FindGROMACS.cmakein +++ b/share/template/cmake/FindGROMACS.cmakein @@ -2,10 +2,10 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2009-2011, by the VOTCA Development Team (http://www.votca.org) -# Copyright (c) 2012,2013 by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Copyright (c) 2012,2013, by the GROMACS development team, led by +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License @@ -32,7 +32,7 @@ # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. -# + # - Finds parts of GROMACS # Find the native GROMACS compents headers and libraries. # diff --git a/share/template/template.cpp b/share/template/template.cpp index 0dbedce4b1..9c568c9c45 100644 --- a/share/template/template.cpp +++ b/share/template/template.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/buildinfo.h.cmakein b/src/buildinfo.h.cmakein index fdbf7da824..3b6b1a4529 100644 --- a/src/buildinfo.h.cmakein +++ b/src/buildinfo.h.cmakein @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/external/gmock-1.6.0/CMakeLists.txt b/src/external/gmock-1.6.0/CMakeLists.txt index 689ed856cc..c3a985e2f3 100644 --- a/src/external/gmock-1.6.0/CMakeLists.txt +++ b/src/external/gmock-1.6.0/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2011,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/CMakeLists.txt b/src/gromacs/CMakeLists.txt index d0ee4bbfeb..5b322be540 100644 --- a/src/gromacs/CMakeLists.txt +++ b/src/gromacs/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata.h b/src/gromacs/analysisdata.h index f006d9b128..51f2d44156 100644 --- a/src/gromacs/analysisdata.h +++ b/src/gromacs/analysisdata.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/CMakeLists.txt b/src/gromacs/analysisdata/CMakeLists.txt index 276fda2a05..b2d0e2f9ea 100644 --- a/src/gromacs/analysisdata/CMakeLists.txt +++ b/src/gromacs/analysisdata/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/abstractdata.cpp b/src/gromacs/analysisdata/abstractdata.cpp index 878341a956..3562cdf2ee 100644 --- a/src/gromacs/analysisdata/abstractdata.cpp +++ b/src/gromacs/analysisdata/abstractdata.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/abstractdata.h b/src/gromacs/analysisdata/abstractdata.h index 55684db257..a8bced1c10 100644 --- a/src/gromacs/analysisdata/abstractdata.h +++ b/src/gromacs/analysisdata/abstractdata.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/analysisdata.cpp b/src/gromacs/analysisdata/analysisdata.cpp index a9545fd701..7a4727435d 100644 --- a/src/gromacs/analysisdata/analysisdata.cpp +++ b/src/gromacs/analysisdata/analysisdata.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/analysisdata.h b/src/gromacs/analysisdata/analysisdata.h index fbd72a5ee6..0fa824ec54 100644 --- a/src/gromacs/analysisdata/analysisdata.h +++ b/src/gromacs/analysisdata/analysisdata.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/arraydata.cpp b/src/gromacs/analysisdata/arraydata.cpp index fadfb33a37..293ed0ad3c 100644 --- a/src/gromacs/analysisdata/arraydata.cpp +++ b/src/gromacs/analysisdata/arraydata.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/arraydata.h b/src/gromacs/analysisdata/arraydata.h index b8dbb85f41..5a8c35bf51 100644 --- a/src/gromacs/analysisdata/arraydata.h +++ b/src/gromacs/analysisdata/arraydata.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/dataframe.cpp b/src/gromacs/analysisdata/dataframe.cpp index 1f38623475..12ff2c03c7 100644 --- a/src/gromacs/analysisdata/dataframe.cpp +++ b/src/gromacs/analysisdata/dataframe.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/dataframe.h b/src/gromacs/analysisdata/dataframe.h index a4562de9d7..f52252988a 100644 --- a/src/gromacs/analysisdata/dataframe.h +++ b/src/gromacs/analysisdata/dataframe.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/datamodule.cpp b/src/gromacs/analysisdata/datamodule.cpp index 45ec144024..e10859259a 100644 --- a/src/gromacs/analysisdata/datamodule.cpp +++ b/src/gromacs/analysisdata/datamodule.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/datamodule.h b/src/gromacs/analysisdata/datamodule.h index 91952b2738..4c60ac9a93 100644 --- a/src/gromacs/analysisdata/datamodule.h +++ b/src/gromacs/analysisdata/datamodule.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/datamodulemanager.cpp b/src/gromacs/analysisdata/datamodulemanager.cpp index 63a2737276..779e7ec05c 100644 --- a/src/gromacs/analysisdata/datamodulemanager.cpp +++ b/src/gromacs/analysisdata/datamodulemanager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/datamodulemanager.h b/src/gromacs/analysisdata/datamodulemanager.h index 391f1e64b1..81ebbbbeee 100644 --- a/src/gromacs/analysisdata/datamodulemanager.h +++ b/src/gromacs/analysisdata/datamodulemanager.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/dataproxy.cpp b/src/gromacs/analysisdata/dataproxy.cpp index ae95cb8830..57040f6fef 100644 --- a/src/gromacs/analysisdata/dataproxy.cpp +++ b/src/gromacs/analysisdata/dataproxy.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/dataproxy.h b/src/gromacs/analysisdata/dataproxy.h index 8afa45172b..50f6d52d5b 100644 --- a/src/gromacs/analysisdata/dataproxy.h +++ b/src/gromacs/analysisdata/dataproxy.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/datastorage.cpp b/src/gromacs/analysisdata/datastorage.cpp index 2ca6d73810..ec80d9b4c8 100644 --- a/src/gromacs/analysisdata/datastorage.cpp +++ b/src/gromacs/analysisdata/datastorage.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/datastorage.h b/src/gromacs/analysisdata/datastorage.h index 6a24206288..1f3f0cc582 100644 --- a/src/gromacs/analysisdata/datastorage.h +++ b/src/gromacs/analysisdata/datastorage.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/CMakeLists.txt b/src/gromacs/analysisdata/modules/CMakeLists.txt index 0b82b1e796..e865340e5d 100644 --- a/src/gromacs/analysisdata/modules/CMakeLists.txt +++ b/src/gromacs/analysisdata/modules/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/average.cpp b/src/gromacs/analysisdata/modules/average.cpp index 4ab7fb7a7e..b8ee98259a 100644 --- a/src/gromacs/analysisdata/modules/average.cpp +++ b/src/gromacs/analysisdata/modules/average.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/average.h b/src/gromacs/analysisdata/modules/average.h index d02c469d40..077d5a948d 100644 --- a/src/gromacs/analysisdata/modules/average.h +++ b/src/gromacs/analysisdata/modules/average.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/displacement.cpp b/src/gromacs/analysisdata/modules/displacement.cpp index ed1929daf8..666acd2fc7 100644 --- a/src/gromacs/analysisdata/modules/displacement.cpp +++ b/src/gromacs/analysisdata/modules/displacement.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/displacement.h b/src/gromacs/analysisdata/modules/displacement.h index 539afd782f..911477accc 100644 --- a/src/gromacs/analysisdata/modules/displacement.h +++ b/src/gromacs/analysisdata/modules/displacement.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/frameaverager.cpp b/src/gromacs/analysisdata/modules/frameaverager.cpp index f79b7ed6c6..061b5fd8a5 100644 --- a/src/gromacs/analysisdata/modules/frameaverager.cpp +++ b/src/gromacs/analysisdata/modules/frameaverager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/frameaverager.h b/src/gromacs/analysisdata/modules/frameaverager.h index 45bed6dcd5..2a2da99314 100644 --- a/src/gromacs/analysisdata/modules/frameaverager.h +++ b/src/gromacs/analysisdata/modules/frameaverager.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/histogram.cpp b/src/gromacs/analysisdata/modules/histogram.cpp index f7c16cd0db..e48ea1b4bd 100644 --- a/src/gromacs/analysisdata/modules/histogram.cpp +++ b/src/gromacs/analysisdata/modules/histogram.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/histogram.h b/src/gromacs/analysisdata/modules/histogram.h index bfeb20522b..3b626cba25 100644 --- a/src/gromacs/analysisdata/modules/histogram.h +++ b/src/gromacs/analysisdata/modules/histogram.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/lifetime.cpp b/src/gromacs/analysisdata/modules/lifetime.cpp index 9426ffe618..c6af8d597e 100644 --- a/src/gromacs/analysisdata/modules/lifetime.cpp +++ b/src/gromacs/analysisdata/modules/lifetime.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/lifetime.h b/src/gromacs/analysisdata/modules/lifetime.h index 373f8dcd6e..64560fdcdb 100644 --- a/src/gromacs/analysisdata/modules/lifetime.h +++ b/src/gromacs/analysisdata/modules/lifetime.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/plot.cpp b/src/gromacs/analysisdata/modules/plot.cpp index 6136941033..8cc0ffbce9 100644 --- a/src/gromacs/analysisdata/modules/plot.cpp +++ b/src/gromacs/analysisdata/modules/plot.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/modules/plot.h b/src/gromacs/analysisdata/modules/plot.h index 023d095055..916fa4a151 100644 --- a/src/gromacs/analysisdata/modules/plot.h +++ b/src/gromacs/analysisdata/modules/plot.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/paralleloptions.h b/src/gromacs/analysisdata/paralleloptions.h index 27e04f8287..dcbd5c482d 100644 --- a/src/gromacs/analysisdata/paralleloptions.h +++ b/src/gromacs/analysisdata/paralleloptions.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/tests/CMakeLists.txt b/src/gromacs/analysisdata/tests/CMakeLists.txt index 9c9bef91ba..4dd11ef08f 100644 --- a/src/gromacs/analysisdata/tests/CMakeLists.txt +++ b/src/gromacs/analysisdata/tests/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2011,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/tests/analysisdata.cpp b/src/gromacs/analysisdata/tests/analysisdata.cpp index 34cc611906..6239b4e213 100644 --- a/src/gromacs/analysisdata/tests/analysisdata.cpp +++ b/src/gromacs/analysisdata/tests/analysisdata.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/tests/arraydata.cpp b/src/gromacs/analysisdata/tests/arraydata.cpp index 258212a267..9305633f2d 100644 --- a/src/gromacs/analysisdata/tests/arraydata.cpp +++ b/src/gromacs/analysisdata/tests/arraydata.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/tests/average.cpp b/src/gromacs/analysisdata/tests/average.cpp index 1528dcd079..49aa2c00cc 100644 --- a/src/gromacs/analysisdata/tests/average.cpp +++ b/src/gromacs/analysisdata/tests/average.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/tests/histogram.cpp b/src/gromacs/analysisdata/tests/histogram.cpp index 14057e93f3..d296399780 100644 --- a/src/gromacs/analysisdata/tests/histogram.cpp +++ b/src/gromacs/analysisdata/tests/histogram.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/analysisdata/tests/lifetime.cpp b/src/gromacs/analysisdata/tests/lifetime.cpp index fb7f8e1356..ae8eadfb80 100644 --- a/src/gromacs/analysisdata/tests/lifetime.cpp +++ b/src/gromacs/analysisdata/tests/lifetime.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline.h b/src/gromacs/commandline.h index 9ff05769c1..49aa86ff71 100644 --- a/src/gromacs/commandline.h +++ b/src/gromacs/commandline.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/CMakeLists.txt b/src/gromacs/commandline/CMakeLists.txt index c3dcf4ffbb..698c8219e9 100644 --- a/src/gromacs/commandline/CMakeLists.txt +++ b/src/gromacs/commandline/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/cmdlinehelpcontext.cpp b/src/gromacs/commandline/cmdlinehelpcontext.cpp index ea0c537dd0..025a55a2fb 100644 --- a/src/gromacs/commandline/cmdlinehelpcontext.cpp +++ b/src/gromacs/commandline/cmdlinehelpcontext.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/cmdlinehelpcontext.h b/src/gromacs/commandline/cmdlinehelpcontext.h index 677c9c87d6..72f41b692c 100644 --- a/src/gromacs/commandline/cmdlinehelpcontext.h +++ b/src/gromacs/commandline/cmdlinehelpcontext.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/cmdlinehelpwriter.cpp b/src/gromacs/commandline/cmdlinehelpwriter.cpp index e65a1ac395..778c0a1b2a 100644 --- a/src/gromacs/commandline/cmdlinehelpwriter.cpp +++ b/src/gromacs/commandline/cmdlinehelpwriter.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/cmdlinehelpwriter.h b/src/gromacs/commandline/cmdlinehelpwriter.h index f0e6c7f1ae..bef3bbd217 100644 --- a/src/gromacs/commandline/cmdlinehelpwriter.h +++ b/src/gromacs/commandline/cmdlinehelpwriter.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/cmdlinemodule.h b/src/gromacs/commandline/cmdlinemodule.h index 5a3e3e5f4f..a482046f82 100644 --- a/src/gromacs/commandline/cmdlinemodule.h +++ b/src/gromacs/commandline/cmdlinemodule.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/cmdlinemodulemanager.cpp b/src/gromacs/commandline/cmdlinemodulemanager.cpp index f21ad0c3e6..daa4e706ec 100644 --- a/src/gromacs/commandline/cmdlinemodulemanager.cpp +++ b/src/gromacs/commandline/cmdlinemodulemanager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/cmdlinemodulemanager.h b/src/gromacs/commandline/cmdlinemodulemanager.h index 6324616f60..60838d2071 100644 --- a/src/gromacs/commandline/cmdlinemodulemanager.h +++ b/src/gromacs/commandline/cmdlinemodulemanager.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/cmdlineparser.cpp b/src/gromacs/commandline/cmdlineparser.cpp index 3aa3ece734..e93ec92f0a 100644 --- a/src/gromacs/commandline/cmdlineparser.cpp +++ b/src/gromacs/commandline/cmdlineparser.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/cmdlineparser.h b/src/gromacs/commandline/cmdlineparser.h index b71f126daf..7f4768c04e 100644 --- a/src/gromacs/commandline/cmdlineparser.h +++ b/src/gromacs/commandline/cmdlineparser.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/tests/CMakeLists.txt b/src/gromacs/commandline/tests/CMakeLists.txt index 55273fa9e9..e7e963bfb7 100644 --- a/src/gromacs/commandline/tests/CMakeLists.txt +++ b/src/gromacs/commandline/tests/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp b/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp index a94ca9fe17..ca3f1b38c2 100644 --- a/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +++ b/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp b/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp index 838e5d086b..79998f652b 100644 --- a/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +++ b/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/commandline/tests/cmdlineparser.cpp b/src/gromacs/commandline/tests/cmdlineparser.cpp index cfd72cfabd..f373d86a4e 100644 --- a/src/gromacs/commandline/tests/cmdlineparser.cpp +++ b/src/gromacs/commandline/tests/cmdlineparser.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/fft/CMakeLists.txt b/src/gromacs/fft/CMakeLists.txt index 26ca0bd1b9..efa779df40 100644 --- a/src/gromacs/fft/CMakeLists.txt +++ b/src/gromacs/fft/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxana/CMakeLists.txt b/src/gromacs/gmxana/CMakeLists.txt index 89a289ce89..509c1703bf 100644 --- a/src/gromacs/gmxana/CMakeLists.txt +++ b/src/gromacs/gmxana/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxana/gmx_anadock.c b/src/gromacs/gmxana/gmx_anadock.c index 534c2768a2..c3a91775b5 100644 --- a/src/gromacs/gmxana/gmx_anadock.c +++ b/src/gromacs/gmxana/gmx_anadock.c @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxana/gmx_do_dssp.c b/src/gromacs/gmxana/gmx_do_dssp.c index 472af731f1..80ec2f629c 100644 --- a/src/gromacs/gmxana/gmx_do_dssp.c +++ b/src/gromacs/gmxana/gmx_do_dssp.c @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxana/gmx_make_edi.c b/src/gromacs/gmxana/gmx_make_edi.c index 41b7144a2a..c3af0fec34 100644 --- a/src/gromacs/gmxana/gmx_make_edi.c +++ b/src/gromacs/gmxana/gmx_make_edi.c @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxana/gmx_make_ndx.c b/src/gromacs/gmxana/gmx_make_ndx.c index dc4818cd6c..f2720f3a6f 100644 --- a/src/gromacs/gmxana/gmx_make_ndx.c +++ b/src/gromacs/gmxana/gmx_make_ndx.c @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxana/gmx_mk_angndx.c b/src/gromacs/gmxana/gmx_mk_angndx.c index 55bb768f05..75fc142ec1 100644 --- a/src/gromacs/gmxana/gmx_mk_angndx.c +++ b/src/gromacs/gmxana/gmx_mk_angndx.c @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxana/gmx_sigeps.c b/src/gromacs/gmxana/gmx_sigeps.c index 7e4d850b79..2fb4d84cb1 100644 --- a/src/gromacs/gmxana/gmx_sigeps.c +++ b/src/gromacs/gmxana/gmx_sigeps.c @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxlib/gmx_detect_hardware.c b/src/gromacs/gmxlib/gmx_detect_hardware.c index fd3d5b621b..2638656aa4 100644 --- a/src/gromacs/gmxlib/gmx_detect_hardware.c +++ b/src/gromacs/gmxlib/gmx_detect_hardware.c @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxlib/gmx_thread_affinity.c b/src/gromacs/gmxlib/gmx_thread_affinity.c index 07cdef78ae..96111882bf 100644 --- a/src/gromacs/gmxlib/gmx_thread_affinity.c +++ b/src/gromacs/gmxlib/gmx_thread_affinity.c @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxlib/nonbonded/nb_generic_adress.c b/src/gromacs/gmxlib/nonbonded/nb_generic_adress.c index 81bb26ed69..5c03ab4e40 100644 --- a/src/gromacs/gmxlib/nonbonded/nb_generic_adress.c +++ b/src/gromacs/gmxlib/nonbonded/nb_generic_adress.c @@ -4,9 +4,9 @@ * Copyright (c) 2009 Christoph Junghans, Brad Lambeth. * Copyright (c) 2011 Christoph Junghans, Sebastian Fritsch * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxlib/statistics/histogram.c b/src/gromacs/gmxlib/statistics/histogram.c index d3c298f0c8..6ab168a422 100644 --- a/src/gromacs/gmxlib/statistics/histogram.c +++ b/src/gromacs/gmxlib/statistics/histogram.c @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/gmxlib/trajana/displacement.c b/src/gromacs/gmxlib/trajana/displacement.c index 7562587029..b1d02c1ca1 100644 --- a/src/gromacs/gmxlib/trajana/displacement.c +++ b/src/gromacs/gmxlib/trajana/displacement.c @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/displacement.h b/src/gromacs/legacyheaders/displacement.h index d43e59fd0a..8a382b6f76 100644 --- a/src/gromacs/legacyheaders/displacement.h +++ b/src/gromacs/legacyheaders/displacement.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/gmx_simd4_macros.h b/src/gromacs/legacyheaders/gmx_simd4_macros.h index 5e5bb48768..5cef56757f 100644 --- a/src/gromacs/legacyheaders/gmx_simd4_macros.h +++ b/src/gromacs/legacyheaders/gmx_simd4_macros.h @@ -2,11 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2012, The GROMACS Development Team + * Copyright (c) 2001-2012, The GROMACS Development Team. * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/gmx_simd4_ref.h b/src/gromacs/legacyheaders/gmx_simd4_ref.h index 192a6105a9..39a19945d1 100644 --- a/src/gromacs/legacyheaders/gmx_simd4_ref.h +++ b/src/gromacs/legacyheaders/gmx_simd4_ref.h @@ -2,11 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2012, The GROMACS Development Team + * Copyright (c) 2001-2012, The GROMACS Development Team. * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/gmx_simd_macros.h b/src/gromacs/legacyheaders/gmx_simd_macros.h index 08c5675713..e7c1742011 100644 --- a/src/gromacs/legacyheaders/gmx_simd_macros.h +++ b/src/gromacs/legacyheaders/gmx_simd_macros.h @@ -4,9 +4,9 @@ * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2012, The GROMACS Development Team * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/gmx_simd_math_double.h b/src/gromacs/legacyheaders/gmx_simd_math_double.h index 6117dd6149..30a2c79dc6 100644 --- a/src/gromacs/legacyheaders/gmx_simd_math_double.h +++ b/src/gromacs/legacyheaders/gmx_simd_math_double.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/gmx_simd_math_single.h b/src/gromacs/legacyheaders/gmx_simd_math_single.h index 9309b8d438..b9f20e65ef 100644 --- a/src/gromacs/legacyheaders/gmx_simd_math_single.h +++ b/src/gromacs/legacyheaders/gmx_simd_math_single.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/gmx_simd_ref.h b/src/gromacs/legacyheaders/gmx_simd_ref.h index ecad324af0..3c4ee171d5 100644 --- a/src/gromacs/legacyheaders/gmx_simd_ref.h +++ b/src/gromacs/legacyheaders/gmx_simd_ref.h @@ -4,9 +4,9 @@ * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2012, The GROMACS Development Team * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/gmx_simd_vec.h b/src/gromacs/legacyheaders/gmx_simd_vec.h index 95dc0d6114..a17a34c3dd 100644 --- a/src/gromacs/legacyheaders/gmx_simd_vec.h +++ b/src/gromacs/legacyheaders/gmx_simd_vec.h @@ -4,9 +4,9 @@ * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2012, The GROMACS Development Team * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/gmx_thread_affinity.h b/src/gromacs/legacyheaders/gmx_thread_affinity.h index d120a322c2..955bb20ba5 100644 --- a/src/gromacs/legacyheaders/gmx_thread_affinity.h +++ b/src/gromacs/legacyheaders/gmx_thread_affinity.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/gpu_utils.h b/src/gromacs/legacyheaders/gpu_utils.h index 49f42cd725..cdb90ea6f7 100644 --- a/src/gromacs/legacyheaders/gpu_utils.h +++ b/src/gromacs/legacyheaders/gpu_utils.h @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2010, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2010, The GROMACS development team. * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/histogram.h b/src/gromacs/legacyheaders/histogram.h index 5235dac60c..bb71486ff0 100644 --- a/src/gromacs/legacyheaders/histogram.h +++ b/src/gromacs/legacyheaders/histogram.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/nbnxn_cuda_data_mgmt.h b/src/gromacs/legacyheaders/nbnxn_cuda_data_mgmt.h index 28daf8c57c..4761532c21 100644 --- a/src/gromacs/legacyheaders/nbnxn_cuda_data_mgmt.h +++ b/src/gromacs/legacyheaders/nbnxn_cuda_data_mgmt.h @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2012, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2012, The GROMACS development team. * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/legacyheaders/string2.h b/src/gromacs/legacyheaders/string2.h index 9f9f08150c..7bd14b8f13 100644 --- a/src/gromacs/legacyheaders/string2.h +++ b/src/gromacs/legacyheaders/string2.h @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/mdlib/nbnxn_cuda/nbnxn_cuda_types.h b/src/gromacs/mdlib/nbnxn_cuda/nbnxn_cuda_types.h index 7f57c516da..923fb60a67 100644 --- a/src/gromacs/mdlib/nbnxn_cuda/nbnxn_cuda_types.h +++ b/src/gromacs/mdlib/nbnxn_cuda/nbnxn_cuda_types.h @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2012, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2012, The GROMACS development team. * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/mdlib/nbnxn_search_simd_2xnn.h b/src/gromacs/mdlib/nbnxn_search_simd_2xnn.h index 8328e35f3d..f3c0d02b40 100644 --- a/src/gromacs/mdlib/nbnxn_search_simd_2xnn.h +++ b/src/gromacs/mdlib/nbnxn_search_simd_2xnn.h @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2012, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2012, The GROMACS development team. * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/mdlib/nbnxn_search_simd_4xn.h b/src/gromacs/mdlib/nbnxn_search_simd_4xn.h index 0168c8ee42..2c1fa6a2a6 100644 --- a/src/gromacs/mdlib/nbnxn_search_simd_4xn.h +++ b/src/gromacs/mdlib/nbnxn_search_simd_4xn.h @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2012, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2012, The GROMACS development team. * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/mdlib/pme_simd4.h b/src/gromacs/mdlib/pme_simd4.h index c66f8e99f6..d432a82a5b 100644 --- a/src/gromacs/mdlib/pme_simd4.h +++ b/src/gromacs/mdlib/pme_simd4.h @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/CMakeLists.txt b/src/gromacs/onlinehelp/CMakeLists.txt index 91934860f2..0e8248ad84 100644 --- a/src/gromacs/onlinehelp/CMakeLists.txt +++ b/src/gromacs/onlinehelp/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/helpformat.cpp b/src/gromacs/onlinehelp/helpformat.cpp index 17e66c9353..f5d99a3d20 100644 --- a/src/gromacs/onlinehelp/helpformat.cpp +++ b/src/gromacs/onlinehelp/helpformat.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/helpformat.h b/src/gromacs/onlinehelp/helpformat.h index a89cab9f6a..46598f97bd 100644 --- a/src/gromacs/onlinehelp/helpformat.h +++ b/src/gromacs/onlinehelp/helpformat.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/helpmanager.cpp b/src/gromacs/onlinehelp/helpmanager.cpp index 90beb2d006..733509737d 100644 --- a/src/gromacs/onlinehelp/helpmanager.cpp +++ b/src/gromacs/onlinehelp/helpmanager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/helpmanager.h b/src/gromacs/onlinehelp/helpmanager.h index 9fddf88b30..122d72242e 100644 --- a/src/gromacs/onlinehelp/helpmanager.h +++ b/src/gromacs/onlinehelp/helpmanager.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/helptopic.cpp b/src/gromacs/onlinehelp/helptopic.cpp index 5c4e0213ab..10a86d8553 100644 --- a/src/gromacs/onlinehelp/helptopic.cpp +++ b/src/gromacs/onlinehelp/helptopic.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/helptopic.h b/src/gromacs/onlinehelp/helptopic.h index 9d9cd3e417..f67bc8e993 100644 --- a/src/gromacs/onlinehelp/helptopic.h +++ b/src/gromacs/onlinehelp/helptopic.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/helptopicinterface.h b/src/gromacs/onlinehelp/helptopicinterface.h index f4eddcaeb3..1071f50152 100644 --- a/src/gromacs/onlinehelp/helptopicinterface.h +++ b/src/gromacs/onlinehelp/helptopicinterface.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/helpwritercontext.cpp b/src/gromacs/onlinehelp/helpwritercontext.cpp index baff5c4177..e1e4256b87 100644 --- a/src/gromacs/onlinehelp/helpwritercontext.cpp +++ b/src/gromacs/onlinehelp/helpwritercontext.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/helpwritercontext.h b/src/gromacs/onlinehelp/helpwritercontext.h index f28c904f7b..392316aa71 100644 --- a/src/gromacs/onlinehelp/helpwritercontext.h +++ b/src/gromacs/onlinehelp/helpwritercontext.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/tests/CMakeLists.txt b/src/gromacs/onlinehelp/tests/CMakeLists.txt index d80c83b850..83f923bffc 100644 --- a/src/gromacs/onlinehelp/tests/CMakeLists.txt +++ b/src/gromacs/onlinehelp/tests/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/tests/helpformat.cpp b/src/gromacs/onlinehelp/tests/helpformat.cpp index aab131e231..58af561faa 100644 --- a/src/gromacs/onlinehelp/tests/helpformat.cpp +++ b/src/gromacs/onlinehelp/tests/helpformat.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/onlinehelp/tests/helpmanager.cpp b/src/gromacs/onlinehelp/tests/helpmanager.cpp index 6a0506317e..14baefd832 100644 --- a/src/gromacs/onlinehelp/tests/helpmanager.cpp +++ b/src/gromacs/onlinehelp/tests/helpmanager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options.h b/src/gromacs/options.h index 4f9fece659..95ab621557 100644 --- a/src/gromacs/options.h +++ b/src/gromacs/options.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/CMakeLists.txt b/src/gromacs/options/CMakeLists.txt index dc858de983..b125426c1b 100644 --- a/src/gromacs/options/CMakeLists.txt +++ b/src/gromacs/options/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/abstractoption.cpp b/src/gromacs/options/abstractoption.cpp index 6d0bef5170..6be36435af 100644 --- a/src/gromacs/options/abstractoption.cpp +++ b/src/gromacs/options/abstractoption.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/abstractoption.h b/src/gromacs/options/abstractoption.h index e80ad0200e..0bfd9b7466 100644 --- a/src/gromacs/options/abstractoption.h +++ b/src/gromacs/options/abstractoption.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/abstractoptionstorage.h b/src/gromacs/options/abstractoptionstorage.h index 29e7b4f01b..9a7a81147b 100644 --- a/src/gromacs/options/abstractoptionstorage.h +++ b/src/gromacs/options/abstractoptionstorage.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/basicoptions.cpp b/src/gromacs/options/basicoptions.cpp index 6b7c33d16c..210e108ba2 100644 --- a/src/gromacs/options/basicoptions.cpp +++ b/src/gromacs/options/basicoptions.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/basicoptions.h b/src/gromacs/options/basicoptions.h index 356f868274..703de7693f 100644 --- a/src/gromacs/options/basicoptions.h +++ b/src/gromacs/options/basicoptions.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/basicoptionstorage.h b/src/gromacs/options/basicoptionstorage.h index e65098e204..ad90573888 100644 --- a/src/gromacs/options/basicoptionstorage.h +++ b/src/gromacs/options/basicoptionstorage.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/filenameoption.cpp b/src/gromacs/options/filenameoption.cpp index 4cd4a5ce42..5791585e9b 100644 --- a/src/gromacs/options/filenameoption.cpp +++ b/src/gromacs/options/filenameoption.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/filenameoption.h b/src/gromacs/options/filenameoption.h index d0e448fb49..489f56d887 100644 --- a/src/gromacs/options/filenameoption.h +++ b/src/gromacs/options/filenameoption.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/filenameoptionstorage.h b/src/gromacs/options/filenameoptionstorage.h index d7a5973a18..c3d0ae3d32 100644 --- a/src/gromacs/options/filenameoptionstorage.h +++ b/src/gromacs/options/filenameoptionstorage.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/optionfiletype.h b/src/gromacs/options/optionfiletype.h index 530f20417e..e6b0d9dc93 100644 --- a/src/gromacs/options/optionfiletype.h +++ b/src/gromacs/options/optionfiletype.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/optionflags.h b/src/gromacs/options/optionflags.h index 44b63c3dbc..41a6514e4f 100644 --- a/src/gromacs/options/optionflags.h +++ b/src/gromacs/options/optionflags.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/options-impl.h b/src/gromacs/options/options-impl.h index b3dd6ad41e..6b06f1fcd7 100644 --- a/src/gromacs/options/options-impl.h +++ b/src/gromacs/options/options-impl.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/options.cpp b/src/gromacs/options/options.cpp index 641a3bb88e..2729d3f565 100644 --- a/src/gromacs/options/options.cpp +++ b/src/gromacs/options/options.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/options.h b/src/gromacs/options/options.h index f7ad22a0a5..ad9517f2ea 100644 --- a/src/gromacs/options/options.h +++ b/src/gromacs/options/options.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/optionsassigner.cpp b/src/gromacs/options/optionsassigner.cpp index d92ce70c25..3ed25279f2 100644 --- a/src/gromacs/options/optionsassigner.cpp +++ b/src/gromacs/options/optionsassigner.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/optionsassigner.h b/src/gromacs/options/optionsassigner.h index 19ee5fcfae..6f99296b41 100644 --- a/src/gromacs/options/optionsassigner.h +++ b/src/gromacs/options/optionsassigner.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/optionstoragetemplate.h b/src/gromacs/options/optionstoragetemplate.h index 02187c14dd..2462f1babf 100644 --- a/src/gromacs/options/optionstoragetemplate.h +++ b/src/gromacs/options/optionstoragetemplate.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/optionsvisitor.cpp b/src/gromacs/options/optionsvisitor.cpp index d4d2668175..4d0b3f678b 100644 --- a/src/gromacs/options/optionsvisitor.cpp +++ b/src/gromacs/options/optionsvisitor.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/optionsvisitor.h b/src/gromacs/options/optionsvisitor.h index 249a793ea8..862b28ee57 100644 --- a/src/gromacs/options/optionsvisitor.h +++ b/src/gromacs/options/optionsvisitor.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/tests/CMakeLists.txt b/src/gromacs/options/tests/CMakeLists.txt index 7a8f3dca49..0991c1fb4d 100644 --- a/src/gromacs/options/tests/CMakeLists.txt +++ b/src/gromacs/options/tests/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2011,2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/tests/abstractoptionstorage.cpp b/src/gromacs/options/tests/abstractoptionstorage.cpp index 4631aff793..cf76386af2 100644 --- a/src/gromacs/options/tests/abstractoptionstorage.cpp +++ b/src/gromacs/options/tests/abstractoptionstorage.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/tests/filenameoption.cpp b/src/gromacs/options/tests/filenameoption.cpp index e626853a77..ee3770d509 100644 --- a/src/gromacs/options/tests/filenameoption.cpp +++ b/src/gromacs/options/tests/filenameoption.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/tests/option.cpp b/src/gromacs/options/tests/option.cpp index 2681f3d905..97e7d9a5f7 100644 --- a/src/gromacs/options/tests/option.cpp +++ b/src/gromacs/options/tests/option.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/tests/optionsassigner.cpp b/src/gromacs/options/tests/optionsassigner.cpp index bb7cb44df4..e12d787ba2 100644 --- a/src/gromacs/options/tests/optionsassigner.cpp +++ b/src/gromacs/options/tests/optionsassigner.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/tests/timeunitmanager.cpp b/src/gromacs/options/tests/timeunitmanager.cpp index 5428731eb9..5f19d51b9c 100644 --- a/src/gromacs/options/tests/timeunitmanager.cpp +++ b/src/gromacs/options/tests/timeunitmanager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/timeunitmanager.cpp b/src/gromacs/options/timeunitmanager.cpp index 9c0baeded8..e705803440 100644 --- a/src/gromacs/options/timeunitmanager.cpp +++ b/src/gromacs/options/timeunitmanager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/options/timeunitmanager.h b/src/gromacs/options/timeunitmanager.h index 981adb8a7c..34f11d97fa 100644 --- a/src/gromacs/options/timeunitmanager.h +++ b/src/gromacs/options/timeunitmanager.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection.h b/src/gromacs/selection.h index 5ebec3db34..0588ce36aa 100644 --- a/src/gromacs/selection.h +++ b/src/gromacs/selection.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/CMakeLists.txt b/src/gromacs/selection/CMakeLists.txt index 64bf4199b6..9ed59ec147 100644 --- a/src/gromacs/selection/CMakeLists.txt +++ b/src/gromacs/selection/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/centerofmass.cpp b/src/gromacs/selection/centerofmass.cpp index 184efddfcf..a46facd626 100644 --- a/src/gromacs/selection/centerofmass.cpp +++ b/src/gromacs/selection/centerofmass.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/centerofmass.h b/src/gromacs/selection/centerofmass.h index cf1aedeb55..6e0f9e2c47 100644 --- a/src/gromacs/selection/centerofmass.h +++ b/src/gromacs/selection/centerofmass.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/compiler.cpp b/src/gromacs/selection/compiler.cpp index 9883052888..129ef558c0 100644 --- a/src/gromacs/selection/compiler.cpp +++ b/src/gromacs/selection/compiler.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/compiler.h b/src/gromacs/selection/compiler.h index dcd39adba9..2988722351 100644 --- a/src/gromacs/selection/compiler.h +++ b/src/gromacs/selection/compiler.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/evaluate.cpp b/src/gromacs/selection/evaluate.cpp index 04f21e844b..f7d2b37637 100644 --- a/src/gromacs/selection/evaluate.cpp +++ b/src/gromacs/selection/evaluate.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/evaluate.h b/src/gromacs/selection/evaluate.h index ef904feb1d..df0aefeb06 100644 --- a/src/gromacs/selection/evaluate.h +++ b/src/gromacs/selection/evaluate.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/indexutil.cpp b/src/gromacs/selection/indexutil.cpp index 7a68a034b6..770c4a9c08 100644 --- a/src/gromacs/selection/indexutil.cpp +++ b/src/gromacs/selection/indexutil.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/indexutil.h b/src/gromacs/selection/indexutil.h index 01f5eafebe..9092febb4a 100644 --- a/src/gromacs/selection/indexutil.h +++ b/src/gromacs/selection/indexutil.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/keywords.h b/src/gromacs/selection/keywords.h index 43b9ba8b3e..c6b3affa91 100644 --- a/src/gromacs/selection/keywords.h +++ b/src/gromacs/selection/keywords.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/mempool.cpp b/src/gromacs/selection/mempool.cpp index 84b4b19a7f..13e90aad50 100644 --- a/src/gromacs/selection/mempool.cpp +++ b/src/gromacs/selection/mempool.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/mempool.h b/src/gromacs/selection/mempool.h index e23f9b9d04..352ed5fab6 100644 --- a/src/gromacs/selection/mempool.h +++ b/src/gromacs/selection/mempool.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/nbsearch.cpp b/src/gromacs/selection/nbsearch.cpp index 1c4e77dc56..268553218a 100644 --- a/src/gromacs/selection/nbsearch.cpp +++ b/src/gromacs/selection/nbsearch.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/nbsearch.h b/src/gromacs/selection/nbsearch.h index 646252168e..c3a2994824 100644 --- a/src/gromacs/selection/nbsearch.h +++ b/src/gromacs/selection/nbsearch.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/params.cpp b/src/gromacs/selection/params.cpp index 18dc7560ec..713ea0efae 100644 --- a/src/gromacs/selection/params.cpp +++ b/src/gromacs/selection/params.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/parser.cpp b/src/gromacs/selection/parser.cpp index 1aa00baa5f..59040c76c7 100644 --- a/src/gromacs/selection/parser.cpp +++ b/src/gromacs/selection/parser.cpp @@ -141,9 +141,9 @@ extern int _gmx_sel_yydebug; * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/parser.h b/src/gromacs/selection/parser.h index 16d748089e..70a4ddf0dd 100644 --- a/src/gromacs/selection/parser.h +++ b/src/gromacs/selection/parser.h @@ -47,9 +47,9 @@ extern int _gmx_sel_yydebug; * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/parser.y b/src/gromacs/selection/parser.y index 81f140a4e3..934d6eb50b 100644 --- a/src/gromacs/selection/parser.y +++ b/src/gromacs/selection/parser.y @@ -3,9 +3,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/parser_internal.h b/src/gromacs/selection/parser_internal.h index 30220e01d4..a9482fa856 100644 --- a/src/gromacs/selection/parser_internal.h +++ b/src/gromacs/selection/parser_internal.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/parsetree.cpp b/src/gromacs/selection/parsetree.cpp index de83a6f3e8..29540a28a5 100644 --- a/src/gromacs/selection/parsetree.cpp +++ b/src/gromacs/selection/parsetree.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/parsetree.h b/src/gromacs/selection/parsetree.h index f68126c0d4..01b85dad06 100644 --- a/src/gromacs/selection/parsetree.h +++ b/src/gromacs/selection/parsetree.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/poscalc.cpp b/src/gromacs/selection/poscalc.cpp index 4999669f12..bceff0039e 100644 --- a/src/gromacs/selection/poscalc.cpp +++ b/src/gromacs/selection/poscalc.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/poscalc.h b/src/gromacs/selection/poscalc.h index 74d83a0b8a..9ddc0fd46c 100644 --- a/src/gromacs/selection/poscalc.h +++ b/src/gromacs/selection/poscalc.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/position.cpp b/src/gromacs/selection/position.cpp index 1713efc026..4521730fec 100644 --- a/src/gromacs/selection/position.cpp +++ b/src/gromacs/selection/position.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/position.h b/src/gromacs/selection/position.h index 1e3b6e1a03..eb2fffc072 100644 --- a/src/gromacs/selection/position.h +++ b/src/gromacs/selection/position.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/scanner.cpp b/src/gromacs/selection/scanner.cpp index b64aa430c9..0d025c9878 100644 --- a/src/gromacs/selection/scanner.cpp +++ b/src/gromacs/selection/scanner.cpp @@ -500,9 +500,9 @@ static yyconst flex_int16_t yy_chk[191] = * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/scanner.h b/src/gromacs/selection/scanner.h index a4a9a6c4b7..20305e1844 100644 --- a/src/gromacs/selection/scanner.h +++ b/src/gromacs/selection/scanner.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/scanner.l b/src/gromacs/selection/scanner.l index a1cd2bcb08..617df5fc04 100644 --- a/src/gromacs/selection/scanner.l +++ b/src/gromacs/selection/scanner.l @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/scanner_internal.cpp b/src/gromacs/selection/scanner_internal.cpp index e67fd64794..40de81944d 100644 --- a/src/gromacs/selection/scanner_internal.cpp +++ b/src/gromacs/selection/scanner_internal.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/scanner_internal.h b/src/gromacs/selection/scanner_internal.h index fe85505b8b..1c02c499ec 100644 --- a/src/gromacs/selection/scanner_internal.h +++ b/src/gromacs/selection/scanner_internal.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selection.cpp b/src/gromacs/selection/selection.cpp index 21967fbb3a..786fb9912a 100644 --- a/src/gromacs/selection/selection.cpp +++ b/src/gromacs/selection/selection.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selection.h b/src/gromacs/selection/selection.h index 306bf17a45..ad96afbbe6 100644 --- a/src/gromacs/selection/selection.h +++ b/src/gromacs/selection/selection.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectioncollection-impl.h b/src/gromacs/selection/selectioncollection-impl.h index 70da9ef237..d44f2124fe 100644 --- a/src/gromacs/selection/selectioncollection-impl.h +++ b/src/gromacs/selection/selectioncollection-impl.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectioncollection.cpp b/src/gromacs/selection/selectioncollection.cpp index 26237dab6b..0336378188 100644 --- a/src/gromacs/selection/selectioncollection.cpp +++ b/src/gromacs/selection/selectioncollection.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectioncollection.h b/src/gromacs/selection/selectioncollection.h index a00ae0484b..7da3d427d4 100644 --- a/src/gromacs/selection/selectioncollection.h +++ b/src/gromacs/selection/selectioncollection.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectionenums.h b/src/gromacs/selection/selectionenums.h index db3ae0a475..d401ac56c1 100644 --- a/src/gromacs/selection/selectionenums.h +++ b/src/gromacs/selection/selectionenums.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectionfileoption.h b/src/gromacs/selection/selectionfileoption.h index b421feb75b..c0a70dad00 100644 --- a/src/gromacs/selection/selectionfileoption.h +++ b/src/gromacs/selection/selectionfileoption.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectionfileoptionstorage.h b/src/gromacs/selection/selectionfileoptionstorage.h index aa4a37736f..77e3d324bd 100644 --- a/src/gromacs/selection/selectionfileoptionstorage.h +++ b/src/gromacs/selection/selectionfileoptionstorage.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectionoption.cpp b/src/gromacs/selection/selectionoption.cpp index 9685c7c1cb..fc0e0331b1 100644 --- a/src/gromacs/selection/selectionoption.cpp +++ b/src/gromacs/selection/selectionoption.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectionoption.h b/src/gromacs/selection/selectionoption.h index 3921957943..987e3532a9 100644 --- a/src/gromacs/selection/selectionoption.h +++ b/src/gromacs/selection/selectionoption.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectionoptionmanager.cpp b/src/gromacs/selection/selectionoptionmanager.cpp index 780623835e..498660d27f 100644 --- a/src/gromacs/selection/selectionoptionmanager.cpp +++ b/src/gromacs/selection/selectionoptionmanager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectionoptionmanager.h b/src/gromacs/selection/selectionoptionmanager.h index 0b9807ac73..1555681361 100644 --- a/src/gromacs/selection/selectionoptionmanager.h +++ b/src/gromacs/selection/selectionoptionmanager.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selectionoptionstorage.h b/src/gromacs/selection/selectionoptionstorage.h index 3b02aea6ce..7fe9f2d11f 100644 --- a/src/gromacs/selection/selectionoptionstorage.h +++ b/src/gromacs/selection/selectionoptionstorage.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selelem.cpp b/src/gromacs/selection/selelem.cpp index eba3dffa6d..804ce7d726 100644 --- a/src/gromacs/selection/selelem.cpp +++ b/src/gromacs/selection/selelem.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selelem.h b/src/gromacs/selection/selelem.h index c89adf0ecb..b48fbb0ef7 100644 --- a/src/gromacs/selection/selelem.h +++ b/src/gromacs/selection/selelem.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selhelp.cpp b/src/gromacs/selection/selhelp.cpp index 8d8defbff6..3a67631d44 100644 --- a/src/gromacs/selection/selhelp.cpp +++ b/src/gromacs/selection/selhelp.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selhelp.h b/src/gromacs/selection/selhelp.h index db9a494f19..42598d7a3b 100644 --- a/src/gromacs/selection/selhelp.h +++ b/src/gromacs/selection/selhelp.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selmethod.cpp b/src/gromacs/selection/selmethod.cpp index 2f3e453319..b695f082e1 100644 --- a/src/gromacs/selection/selmethod.cpp +++ b/src/gromacs/selection/selmethod.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selmethod.h b/src/gromacs/selection/selmethod.h index ac49da343d..bfd466fec3 100644 --- a/src/gromacs/selection/selmethod.h +++ b/src/gromacs/selection/selmethod.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selparam.h b/src/gromacs/selection/selparam.h index a886ad7b75..9f471ccf5e 100644 --- a/src/gromacs/selection/selparam.h +++ b/src/gromacs/selection/selparam.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selvalue.cpp b/src/gromacs/selection/selvalue.cpp index 00b26a92ca..042280f5c1 100644 --- a/src/gromacs/selection/selvalue.cpp +++ b/src/gromacs/selection/selvalue.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/selvalue.h b/src/gromacs/selection/selvalue.h index 6b906f6d78..cf0104d34f 100644 --- a/src/gromacs/selection/selvalue.h +++ b/src/gromacs/selection/selvalue.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/sm_compare.cpp b/src/gromacs/selection/sm_compare.cpp index 1c7c74db7c..b2d361c36e 100644 --- a/src/gromacs/selection/sm_compare.cpp +++ b/src/gromacs/selection/sm_compare.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/sm_distance.cpp b/src/gromacs/selection/sm_distance.cpp index 8390c46ce6..093ee0f6a0 100644 --- a/src/gromacs/selection/sm_distance.cpp +++ b/src/gromacs/selection/sm_distance.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/sm_insolidangle.cpp b/src/gromacs/selection/sm_insolidangle.cpp index 7149a34541..fddede3c70 100644 --- a/src/gromacs/selection/sm_insolidangle.cpp +++ b/src/gromacs/selection/sm_insolidangle.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/sm_keywords.cpp b/src/gromacs/selection/sm_keywords.cpp index 4fac882059..503819ead8 100644 --- a/src/gromacs/selection/sm_keywords.cpp +++ b/src/gromacs/selection/sm_keywords.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/sm_merge.cpp b/src/gromacs/selection/sm_merge.cpp index 45f191d9f6..f7075fd1fc 100644 --- a/src/gromacs/selection/sm_merge.cpp +++ b/src/gromacs/selection/sm_merge.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/sm_permute.cpp b/src/gromacs/selection/sm_permute.cpp index d7b248d81c..3d4fec27d4 100644 --- a/src/gromacs/selection/sm_permute.cpp +++ b/src/gromacs/selection/sm_permute.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/sm_position.cpp b/src/gromacs/selection/sm_position.cpp index cc80f2a4e0..6a55ebb235 100644 --- a/src/gromacs/selection/sm_position.cpp +++ b/src/gromacs/selection/sm_position.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/sm_same.cpp b/src/gromacs/selection/sm_same.cpp index ae842a5351..8c7108c042 100644 --- a/src/gromacs/selection/sm_same.cpp +++ b/src/gromacs/selection/sm_same.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/sm_simple.cpp b/src/gromacs/selection/sm_simple.cpp index bf4463731f..b75572fbb7 100644 --- a/src/gromacs/selection/sm_simple.cpp +++ b/src/gromacs/selection/sm_simple.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/symrec.cpp b/src/gromacs/selection/symrec.cpp index 947a632b93..a163e862fc 100644 --- a/src/gromacs/selection/symrec.cpp +++ b/src/gromacs/selection/symrec.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/symrec.h b/src/gromacs/selection/symrec.h index ce17c2c622..984c272042 100644 --- a/src/gromacs/selection/symrec.h +++ b/src/gromacs/selection/symrec.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/tests/CMakeLists.txt b/src/gromacs/selection/tests/CMakeLists.txt index 78dbbd05be..8c9046376b 100644 --- a/src/gromacs/selection/tests/CMakeLists.txt +++ b/src/gromacs/selection/tests/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/tests/gensphere.py b/src/gromacs/selection/tests/gensphere.py index e96347eba4..505fb43032 100755 --- a/src/gromacs/selection/tests/gensphere.py +++ b/src/gromacs/selection/tests/gensphere.py @@ -3,9 +3,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/tests/indexutil.cpp b/src/gromacs/selection/tests/indexutil.cpp index 76ee4dbbd9..8dd46bfcbf 100644 --- a/src/gromacs/selection/tests/indexutil.cpp +++ b/src/gromacs/selection/tests/indexutil.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/tests/nbsearch.cpp b/src/gromacs/selection/tests/nbsearch.cpp index 0fadff19a9..eac05a6ea7 100644 --- a/src/gromacs/selection/tests/nbsearch.cpp +++ b/src/gromacs/selection/tests/nbsearch.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/tests/poscalc.cpp b/src/gromacs/selection/tests/poscalc.cpp index aa7198b207..177912e487 100644 --- a/src/gromacs/selection/tests/poscalc.cpp +++ b/src/gromacs/selection/tests/poscalc.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/tests/selectioncollection.cpp b/src/gromacs/selection/tests/selectioncollection.cpp index 419e62f960..3ca4d47fe2 100644 --- a/src/gromacs/selection/tests/selectioncollection.cpp +++ b/src/gromacs/selection/tests/selectioncollection.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/tests/selectionoption.cpp b/src/gromacs/selection/tests/selectionoption.cpp index a64ec9fb4f..0bc65b5dea 100644 --- a/src/gromacs/selection/tests/selectionoption.cpp +++ b/src/gromacs/selection/tests/selectionoption.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/tests/toputils.cpp b/src/gromacs/selection/tests/toputils.cpp index 3693facba3..f205aa659a 100644 --- a/src/gromacs/selection/tests/toputils.cpp +++ b/src/gromacs/selection/tests/toputils.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/selection/tests/toputils.h b/src/gromacs/selection/tests/toputils.h index a778bbd72c..94ab8c3139 100644 --- a/src/gromacs/selection/tests/toputils.h +++ b/src/gromacs/selection/tests/toputils.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/timing/CMakeLists.txt b/src/gromacs/timing/CMakeLists.txt index 4d3d87fc3a..79c0a87ac5 100644 --- a/src/gromacs/timing/CMakeLists.txt +++ b/src/gromacs/timing/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis.h b/src/gromacs/trajectoryanalysis.h index 29194e851a..025f2219ce 100644 --- a/src/gromacs/trajectoryanalysis.h +++ b/src/gromacs/trajectoryanalysis.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/CMakeLists.txt b/src/gromacs/trajectoryanalysis/CMakeLists.txt index 1b1becadf2..504f706769 100644 --- a/src/gromacs/trajectoryanalysis/CMakeLists.txt +++ b/src/gromacs/trajectoryanalysis/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/analysismodule.cpp b/src/gromacs/trajectoryanalysis/analysismodule.cpp index c347b9bcab..da1b84ded5 100644 --- a/src/gromacs/trajectoryanalysis/analysismodule.cpp +++ b/src/gromacs/trajectoryanalysis/analysismodule.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/analysismodule.h b/src/gromacs/trajectoryanalysis/analysismodule.h index 254059d9ba..2722c5065f 100644 --- a/src/gromacs/trajectoryanalysis/analysismodule.h +++ b/src/gromacs/trajectoryanalysis/analysismodule.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/analysissettings-impl.h b/src/gromacs/trajectoryanalysis/analysissettings-impl.h index 8fd3d422d4..a19c73b0ab 100644 --- a/src/gromacs/trajectoryanalysis/analysissettings-impl.h +++ b/src/gromacs/trajectoryanalysis/analysissettings-impl.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/analysissettings.cpp b/src/gromacs/trajectoryanalysis/analysissettings.cpp index e6b4798055..9819a5f74c 100644 --- a/src/gromacs/trajectoryanalysis/analysissettings.cpp +++ b/src/gromacs/trajectoryanalysis/analysissettings.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/analysissettings.h b/src/gromacs/trajectoryanalysis/analysissettings.h index f03d06ae80..391b3791d8 100644 --- a/src/gromacs/trajectoryanalysis/analysissettings.h +++ b/src/gromacs/trajectoryanalysis/analysissettings.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp b/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp index ddc6edb4b5..89c0574a92 100644 --- a/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp +++ b/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/cmdlinerunner.h b/src/gromacs/trajectoryanalysis/cmdlinerunner.h index 3bde55ee2c..97e4e20192 100644 --- a/src/gromacs/trajectoryanalysis/cmdlinerunner.h +++ b/src/gromacs/trajectoryanalysis/cmdlinerunner.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules.cpp b/src/gromacs/trajectoryanalysis/modules.cpp index d5d16c124a..501806c449 100644 --- a/src/gromacs/trajectoryanalysis/modules.cpp +++ b/src/gromacs/trajectoryanalysis/modules.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules.h b/src/gromacs/trajectoryanalysis/modules.h index ac7268f5e3..0c6a7db979 100644 --- a/src/gromacs/trajectoryanalysis/modules.h +++ b/src/gromacs/trajectoryanalysis/modules.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules/angle.cpp b/src/gromacs/trajectoryanalysis/modules/angle.cpp index 95ef586a70..e6e3b428e5 100644 --- a/src/gromacs/trajectoryanalysis/modules/angle.cpp +++ b/src/gromacs/trajectoryanalysis/modules/angle.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules/angle.h b/src/gromacs/trajectoryanalysis/modules/angle.h index 6da5ef693e..80976ebca4 100644 --- a/src/gromacs/trajectoryanalysis/modules/angle.h +++ b/src/gromacs/trajectoryanalysis/modules/angle.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules/distance.cpp b/src/gromacs/trajectoryanalysis/modules/distance.cpp index 7a777f697e..dd5c1a1e2c 100644 --- a/src/gromacs/trajectoryanalysis/modules/distance.cpp +++ b/src/gromacs/trajectoryanalysis/modules/distance.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules/distance.h b/src/gromacs/trajectoryanalysis/modules/distance.h index 101548bde1..7d354e3894 100644 --- a/src/gromacs/trajectoryanalysis/modules/distance.h +++ b/src/gromacs/trajectoryanalysis/modules/distance.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules/freevolume.cpp b/src/gromacs/trajectoryanalysis/modules/freevolume.cpp index ab16c37b56..3f27807cac 100644 --- a/src/gromacs/trajectoryanalysis/modules/freevolume.cpp +++ b/src/gromacs/trajectoryanalysis/modules/freevolume.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules/freevolume.h b/src/gromacs/trajectoryanalysis/modules/freevolume.h index ecb93b1db4..cc96d6a8e6 100644 --- a/src/gromacs/trajectoryanalysis/modules/freevolume.h +++ b/src/gromacs/trajectoryanalysis/modules/freevolume.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules/select.cpp b/src/gromacs/trajectoryanalysis/modules/select.cpp index e95229a9b1..d8562967bf 100644 --- a/src/gromacs/trajectoryanalysis/modules/select.cpp +++ b/src/gromacs/trajectoryanalysis/modules/select.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2009,2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/modules/select.h b/src/gromacs/trajectoryanalysis/modules/select.h index 8f8fa245c0..90c4898fa3 100644 --- a/src/gromacs/trajectoryanalysis/modules/select.h +++ b/src/gromacs/trajectoryanalysis/modules/select.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/runnercommon.cpp b/src/gromacs/trajectoryanalysis/runnercommon.cpp index e8944b03f3..fa12be6c9d 100644 --- a/src/gromacs/trajectoryanalysis/runnercommon.cpp +++ b/src/gromacs/trajectoryanalysis/runnercommon.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/runnercommon.h b/src/gromacs/trajectoryanalysis/runnercommon.h index 43d3108bc8..caa3d5a65b 100644 --- a/src/gromacs/trajectoryanalysis/runnercommon.h +++ b/src/gromacs/trajectoryanalysis/runnercommon.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/tests/CMakeLists.txt b/src/gromacs/trajectoryanalysis/tests/CMakeLists.txt index bdfc20271c..4bdd6b71bf 100644 --- a/src/gromacs/trajectoryanalysis/tests/CMakeLists.txt +++ b/src/gromacs/trajectoryanalysis/tests/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/tests/angle.cpp b/src/gromacs/trajectoryanalysis/tests/angle.cpp index 25639ced3c..813435370e 100644 --- a/src/gromacs/trajectoryanalysis/tests/angle.cpp +++ b/src/gromacs/trajectoryanalysis/tests/angle.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/tests/distance.cpp b/src/gromacs/trajectoryanalysis/tests/distance.cpp index d5f8749579..f027bf39bd 100644 --- a/src/gromacs/trajectoryanalysis/tests/distance.cpp +++ b/src/gromacs/trajectoryanalysis/tests/distance.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/tests/freevolume.cpp b/src/gromacs/trajectoryanalysis/tests/freevolume.cpp index 3a01165207..2b56346541 100644 --- a/src/gromacs/trajectoryanalysis/tests/freevolume.cpp +++ b/src/gromacs/trajectoryanalysis/tests/freevolume.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/tests/moduletest.cpp b/src/gromacs/trajectoryanalysis/tests/moduletest.cpp index de3dd547e9..c99c9ef903 100644 --- a/src/gromacs/trajectoryanalysis/tests/moduletest.cpp +++ b/src/gromacs/trajectoryanalysis/tests/moduletest.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/tests/moduletest.h b/src/gromacs/trajectoryanalysis/tests/moduletest.h index c7484b0adf..25568c3e3f 100644 --- a/src/gromacs/trajectoryanalysis/tests/moduletest.h +++ b/src/gromacs/trajectoryanalysis/tests/moduletest.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/tests/select.cpp b/src/gromacs/trajectoryanalysis/tests/select.cpp index d2060679ed..7d7725d2b4 100644 --- a/src/gromacs/trajectoryanalysis/tests/select.cpp +++ b/src/gromacs/trajectoryanalysis/tests/select.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/trajectoryanalysis/tests/test_selection.cpp b/src/gromacs/trajectoryanalysis/tests/test_selection.cpp index 9f9865f8f8..e13c4a0ec9 100644 --- a/src/gromacs/trajectoryanalysis/tests/test_selection.cpp +++ b/src/gromacs/trajectoryanalysis/tests/test_selection.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility.h b/src/gromacs/utility.h index b91f3b9c4e..44a493fdb6 100644 --- a/src/gromacs/utility.h +++ b/src/gromacs/utility.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/CMakeLists.txt b/src/gromacs/utility/CMakeLists.txt index d9de332c6d..3fe0b73feb 100644 --- a/src/gromacs/utility/CMakeLists.txt +++ b/src/gromacs/utility/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/arrayref.h b/src/gromacs/utility/arrayref.h index c829571483..55c17017de 100644 --- a/src/gromacs/utility/arrayref.h +++ b/src/gromacs/utility/arrayref.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/common.h b/src/gromacs/utility/common.h index f54654681d..11b303ea9d 100644 --- a/src/gromacs/utility/common.h +++ b/src/gromacs/utility/common.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/errorcodes.cpp b/src/gromacs/utility/errorcodes.cpp index 633bdbd4f1..476b22ef92 100644 --- a/src/gromacs/utility/errorcodes.cpp +++ b/src/gromacs/utility/errorcodes.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/errorcodes.h b/src/gromacs/utility/errorcodes.h index abc6c9f0a2..36595d196b 100644 --- a/src/gromacs/utility/errorcodes.h +++ b/src/gromacs/utility/errorcodes.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/errorformat.cpp b/src/gromacs/utility/errorformat.cpp index a63112a0fd..2a0c748e81 100644 --- a/src/gromacs/utility/errorformat.cpp +++ b/src/gromacs/utility/errorformat.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/errorformat.h b/src/gromacs/utility/errorformat.h index dba38623b8..eabdd8967b 100644 --- a/src/gromacs/utility/errorformat.h +++ b/src/gromacs/utility/errorformat.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/exceptions.cpp b/src/gromacs/utility/exceptions.cpp index 1c5b5d2de4..f0e46f9bd1 100644 --- a/src/gromacs/utility/exceptions.cpp +++ b/src/gromacs/utility/exceptions.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/exceptions.h b/src/gromacs/utility/exceptions.h index 9042e39d5d..0425dc6d5b 100644 --- a/src/gromacs/utility/exceptions.h +++ b/src/gromacs/utility/exceptions.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/file.cpp b/src/gromacs/utility/file.cpp index af49d16cd7..59f5a3d363 100644 --- a/src/gromacs/utility/file.cpp +++ b/src/gromacs/utility/file.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/file.h b/src/gromacs/utility/file.h index 6c16cce92d..fbd6353c5f 100644 --- a/src/gromacs/utility/file.h +++ b/src/gromacs/utility/file.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/flags.h b/src/gromacs/utility/flags.h index fe8422946f..f34ac2e05f 100644 --- a/src/gromacs/utility/flags.h +++ b/src/gromacs/utility/flags.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/gitversion.c.cmakein b/src/gromacs/utility/gitversion.c.cmakein index 0399949b8c..c801dfba24 100644 --- a/src/gromacs/utility/gitversion.c.cmakein +++ b/src/gromacs/utility/gitversion.c.cmakein @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/gitversion.h b/src/gromacs/utility/gitversion.h index 25d0100ad0..e2a73a67e2 100644 --- a/src/gromacs/utility/gitversion.h +++ b/src/gromacs/utility/gitversion.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/gmx_header_config.h b/src/gromacs/utility/gmx_header_config.h index d1698acf4f..d70c1efd67 100644 --- a/src/gromacs/utility/gmx_header_config.h +++ b/src/gromacs/utility/gmx_header_config.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/gmx_header_config_gen.h.cmakein b/src/gromacs/utility/gmx_header_config_gen.h.cmakein index 42cb13129b..603d39cf75 100644 --- a/src/gromacs/utility/gmx_header_config_gen.h.cmakein +++ b/src/gromacs/utility/gmx_header_config_gen.h.cmakein @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/gmxassert.cpp b/src/gromacs/utility/gmxassert.cpp index 657adee116..eba0f964eb 100644 --- a/src/gromacs/utility/gmxassert.cpp +++ b/src/gromacs/utility/gmxassert.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/gmxassert.h b/src/gromacs/utility/gmxassert.h index 9e36299cd2..432473b938 100644 --- a/src/gromacs/utility/gmxassert.h +++ b/src/gromacs/utility/gmxassert.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/gmxmpi.h b/src/gromacs/utility/gmxmpi.h index fe7680cda0..1b0dbe6823 100644 --- a/src/gromacs/utility/gmxmpi.h +++ b/src/gromacs/utility/gmxmpi.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/gmxregex.cpp b/src/gromacs/utility/gmxregex.cpp index ec57d4fce4..e6b0ce5c8c 100644 --- a/src/gromacs/utility/gmxregex.cpp +++ b/src/gromacs/utility/gmxregex.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/gmxregex.h b/src/gromacs/utility/gmxregex.h index b70102f7be..a80f523bee 100644 --- a/src/gromacs/utility/gmxregex.h +++ b/src/gromacs/utility/gmxregex.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/init.cpp b/src/gromacs/utility/init.cpp index 973a73cd59..54bde83be9 100644 --- a/src/gromacs/utility/init.cpp +++ b/src/gromacs/utility/init.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/init.h b/src/gromacs/utility/init.h index bd7344a64e..43d0d7d385 100644 --- a/src/gromacs/utility/init.h +++ b/src/gromacs/utility/init.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/messagestringcollector.cpp b/src/gromacs/utility/messagestringcollector.cpp index 6c1da2d50f..5bc53b8a2e 100644 --- a/src/gromacs/utility/messagestringcollector.cpp +++ b/src/gromacs/utility/messagestringcollector.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/messagestringcollector.h b/src/gromacs/utility/messagestringcollector.h index 71bdc2b208..aca59a33b1 100644 --- a/src/gromacs/utility/messagestringcollector.h +++ b/src/gromacs/utility/messagestringcollector.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/path.cpp b/src/gromacs/utility/path.cpp index c1d0347953..0e619d6767 100644 --- a/src/gromacs/utility/path.cpp +++ b/src/gromacs/utility/path.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/path.h b/src/gromacs/utility/path.h index 833284bdab..04e0255c06 100644 --- a/src/gromacs/utility/path.h +++ b/src/gromacs/utility/path.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/programinfo.cpp b/src/gromacs/utility/programinfo.cpp index 32d6b452d9..4c0f850769 100644 --- a/src/gromacs/utility/programinfo.cpp +++ b/src/gromacs/utility/programinfo.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/programinfo.h b/src/gromacs/utility/programinfo.h index 7f9cfa191d..0467e1bbc0 100644 --- a/src/gromacs/utility/programinfo.h +++ b/src/gromacs/utility/programinfo.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/stringutil.cpp b/src/gromacs/utility/stringutil.cpp index ed0e77ff53..638d10b710 100644 --- a/src/gromacs/utility/stringutil.cpp +++ b/src/gromacs/utility/stringutil.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/stringutil.h b/src/gromacs/utility/stringutil.h index ce0cf049a2..56757e1402 100644 --- a/src/gromacs/utility/stringutil.h +++ b/src/gromacs/utility/stringutil.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/tests/CMakeLists.txt b/src/gromacs/utility/tests/CMakeLists.txt index 21cfdb921b..5f73274522 100644 --- a/src/gromacs/utility/tests/CMakeLists.txt +++ b/src/gromacs/utility/tests/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/tests/programinfo.cpp b/src/gromacs/utility/tests/programinfo.cpp index 59cd367ff8..16dbf43c43 100644 --- a/src/gromacs/utility/tests/programinfo.cpp +++ b/src/gromacs/utility/tests/programinfo.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/tests/stringutil.cpp b/src/gromacs/utility/tests/stringutil.cpp index 7323f7a6c5..ac3942738c 100644 --- a/src/gromacs/utility/tests/stringutil.cpp +++ b/src/gromacs/utility/tests/stringutil.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/utility/uniqueptr.h b/src/gromacs/utility/uniqueptr.h index 04c7af4a23..c9157f9755 100644 --- a/src/gromacs/utility/uniqueptr.h +++ b/src/gromacs/utility/uniqueptr.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/gromacs/version.h.cmakein b/src/gromacs/version.h.cmakein index bd4d5edfd1..3bca7a86c9 100644 --- a/src/gromacs/version.h.cmakein +++ b/src/gromacs/version.h.cmakein @@ -1,10 +1,10 @@ /* * This file is part of the GROMACS molecular simulation package. * - * Copyright (c) 2012 by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/programs/CMakeLists.txt b/src/programs/CMakeLists.txt index 94c7bab158..70c6468356 100644 --- a/src/programs/CMakeLists.txt +++ b/src/programs/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/programs/CreateLinks.cmake.cmakein b/src/programs/CreateLinks.cmake.cmakein index 12dc162275..94f3929ae1 100644 --- a/src/programs/CreateLinks.cmake.cmakein +++ b/src/programs/CreateLinks.cmake.cmakein @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/programs/gmx/gmx.cpp b/src/programs/gmx/gmx.cpp index d4fec6c3a3..09f4b4868c 100644 --- a/src/programs/gmx/gmx.cpp +++ b/src/programs/gmx/gmx.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/programs/gmx/legacymodules.cpp b/src/programs/gmx/legacymodules.cpp index f45fb20abe..ab74aad094 100644 --- a/src/programs/gmx/legacymodules.cpp +++ b/src/programs/gmx/legacymodules.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/programs/gmx/legacymodules.h b/src/programs/gmx/legacymodules.h index 580be2f6f1..32ad902eeb 100644 --- a/src/programs/gmx/legacymodules.h +++ b/src/programs/gmx/legacymodules.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/programs/gmx/tomorse.h b/src/programs/gmx/tomorse.h index 0cf9905bb0..ec07fd5f10 100644 --- a/src/programs/gmx/tomorse.h +++ b/src/programs/gmx/tomorse.h @@ -2,12 +2,11 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/programs/mdrun/mdrun_main.h b/src/programs/mdrun/mdrun_main.h index 8b19e6f887..8b0799f138 100644 --- a/src/programs/mdrun/mdrun_main.h +++ b/src/programs/mdrun/mdrun_main.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/programs/mdrun_main.cpp b/src/programs/mdrun_main.cpp index 632280312e..17d4b708fd 100644 --- a/src/programs/mdrun_main.cpp +++ b/src/programs/mdrun_main.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/CMakeLists.txt b/src/testutils/CMakeLists.txt index 93a4abd914..580fcf1dff 100644 --- a/src/testutils/CMakeLists.txt +++ b/src/testutils/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2011,2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/TestMacros.cmake b/src/testutils/TestMacros.cmake index 828e9e4808..5ad214537a 100644 --- a/src/testutils/TestMacros.cmake +++ b/src/testutils/TestMacros.cmake @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2011,2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/cmdlinetest.cpp b/src/testutils/cmdlinetest.cpp index 9f81e8b55f..d2f48c37c9 100644 --- a/src/testutils/cmdlinetest.cpp +++ b/src/testutils/cmdlinetest.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/cmdlinetest.h b/src/testutils/cmdlinetest.h index ca979042ae..4ab74061c7 100644 --- a/src/testutils/cmdlinetest.h +++ b/src/testutils/cmdlinetest.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/datatest.cpp b/src/testutils/datatest.cpp index 2d14ab09f8..a78a44f194 100644 --- a/src/testutils/datatest.cpp +++ b/src/testutils/datatest.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/datatest.h b/src/testutils/datatest.h index da2317cfc4..bb7c076540 100644 --- a/src/testutils/datatest.h +++ b/src/testutils/datatest.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/mock_datamodule.cpp b/src/testutils/mock_datamodule.cpp index 0f7697fa35..48bbc0640d 100644 --- a/src/testutils/mock_datamodule.cpp +++ b/src/testutils/mock_datamodule.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/mock_datamodule.h b/src/testutils/mock_datamodule.h index 0097e8c28b..df632f251d 100644 --- a/src/testutils/mock_datamodule.h +++ b/src/testutils/mock_datamodule.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/mock_helptopic.cpp b/src/testutils/mock_helptopic.cpp index fa9692762f..826e6a4b34 100644 --- a/src/testutils/mock_helptopic.cpp +++ b/src/testutils/mock_helptopic.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/mock_helptopic.h b/src/testutils/mock_helptopic.h index c330bd8019..471e0e5e90 100644 --- a/src/testutils/mock_helptopic.h +++ b/src/testutils/mock_helptopic.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/refdata.cpp b/src/testutils/refdata.cpp index 9e37f9f460..2faa5955af 100644 --- a/src/testutils/refdata.cpp +++ b/src/testutils/refdata.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/refdata.h b/src/testutils/refdata.h index ed678309ff..fb42f86855 100644 --- a/src/testutils/refdata.h +++ b/src/testutils/refdata.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/stringtest.cpp b/src/testutils/stringtest.cpp index 239eea71ae..1b3ac9640b 100644 --- a/src/testutils/stringtest.cpp +++ b/src/testutils/stringtest.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/stringtest.h b/src/testutils/stringtest.h index 290dd03e90..9d2744f8ff 100644 --- a/src/testutils/stringtest.h +++ b/src/testutils/stringtest.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/testasserts.h b/src/testutils/testasserts.h index 8eb6af261e..33c19880be 100644 --- a/src/testutils/testasserts.h +++ b/src/testutils/testasserts.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/testexceptions.h b/src/testutils/testexceptions.h index 1a74edfb39..9740352a36 100644 --- a/src/testutils/testexceptions.h +++ b/src/testutils/testexceptions.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/testfilemanager.cpp b/src/testutils/testfilemanager.cpp index 6c7c5683c5..fe54697a3e 100644 --- a/src/testutils/testfilemanager.cpp +++ b/src/testutils/testfilemanager.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/testfilemanager.h b/src/testutils/testfilemanager.h index 098a373a42..084b577933 100644 --- a/src/testutils/testfilemanager.h +++ b/src/testutils/testfilemanager.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/testoptions.cpp b/src/testutils/testoptions.cpp index 27ce66dbe3..c072c6bcee 100644 --- a/src/testutils/testoptions.cpp +++ b/src/testutils/testoptions.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/testoptions.h b/src/testutils/testoptions.h index eb0a7c23b8..238578d4db 100644 --- a/src/testutils/testoptions.h +++ b/src/testutils/testoptions.h @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/tests/CMakeLists.txt b/src/testutils/tests/CMakeLists.txt index d96ccbccea..62a18aa074 100644 --- a/src/testutils/tests/CMakeLists.txt +++ b/src/testutils/tests/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2011,2012, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/tests/refdata.cpp b/src/testutils/tests/refdata.cpp index 226a654cda..5cd772313f 100644 --- a/src/testutils/tests/refdata.cpp +++ b/src/testutils/tests/refdata.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2011,2012,2013, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/src/testutils/unittest_main.cpp b/src/testutils/unittest_main.cpp index 3ab8a2081a..369362ea1c 100644 --- a/src/testutils/unittest_main.cpp +++ b/src/testutils/unittest_main.cpp @@ -2,9 +2,9 @@ * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 2010,2011,2012, by the GROMACS development team, led by - * David van der Spoel, Berk Hess, Erik Lindahl, and including many - * others, as listed in the AUTHORS file in the top-level source - * directory and at http://www.gromacs.org. + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt index fb103b7a11..5ccc4075b8 100644 --- a/tests/CMakeLists.txt +++ b/tests/CMakeLists.txt @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012,2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License @@ -31,7 +31,7 @@ # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. -# + set(REGRESSIONTEST_PATH "" CACHE PATH "Directory containing regressiontests") mark_as_advanced(REGRESSIONTEST_PATH) option(REGRESSIONTEST_DOWNLOAD diff --git a/tests/CppCheck.cmake b/tests/CppCheck.cmake index 2bf81cf212..4e64e29afc 100644 --- a/tests/CppCheck.cmake +++ b/tests/CppCheck.cmake @@ -2,9 +2,9 @@ # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2013, by the GROMACS development team, led by -# David van der Spoel, Berk Hess, Erik Lindahl, and including many -# others, as listed in the AUTHORS file in the top-level source -# directory and at http://www.gromacs.org. +# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, +# and including many others, as listed in the AUTHORS file in the +# top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License @@ -31,7 +31,6 @@ # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. -# find_program(CPPCHECK_EXECUTABLE NAMES cppcheck -- 2.22.0