From 7c2f8ee0ba7f7e464d83a55856a7ad3f8c6f36e9 Mon Sep 17 00:00:00 2001 From: Teemu Murtola Date: Mon, 2 Dec 2013 20:59:20 +0200 Subject: [PATCH] Fix remaining copyright headers Apply copyright to the remaining files, excluding thread_mpi, with the copyright year as the year when the last change to that file was made (excluding other copyright stuff and mass uncrustification). Part of #818. Change-Id: Ib70deb8a8e71b23511b68c91e05c1dee821a6d2c --- .gitattributes | 3 + src/gromacs/commandline/pargs.cpp | 52 +++++++++--------- src/gromacs/fileio/timecontrol.c | 52 +++++++++--------- src/gromacs/gmxana/addconf.c | 52 +++++++++--------- src/gromacs/gmxana/addconf.h | 52 +++++++++--------- src/gromacs/gmxana/anadih.c | 52 +++++++++--------- src/gromacs/gmxana/autocorr.c | 52 +++++++++--------- src/gromacs/gmxana/cmat.c | 52 +++++++++--------- src/gromacs/gmxana/cmat.h | 52 +++++++++--------- src/gromacs/gmxana/correl.c | 51 +++++++++-------- src/gromacs/gmxana/correl.h | 52 +++++++++--------- src/gromacs/gmxana/dlist.c | 52 +++++++++--------- src/gromacs/gmxana/edittop.c | 52 +++++++++--------- src/gromacs/gmxana/eigio.c | 52 +++++++++--------- src/gromacs/gmxana/eigio.h | 52 +++++++++--------- src/gromacs/gmxana/expfit.c | 53 +++++++++--------- src/gromacs/gmxana/fitahx.c | 52 +++++++++--------- src/gromacs/gmxana/fitahx.h | 52 +++++++++--------- src/gromacs/gmxana/gmx_ana.h | 51 +++++++++-------- src/gromacs/gmxana/gmx_anaeig.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_analyze.c | 55 ++++++++++--------- src/gromacs/gmxana/gmx_angle.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_bundle.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_chi.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_cluster.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_clustsize.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_confrms.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_covar.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_density.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_densmap.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_dielectric.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_dipoles.cpp | 54 +++++++++--------- src/gromacs/gmxana/gmx_disre.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_dyndom.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_editconf.c | 55 ++++++++++--------- src/gromacs/gmxana/gmx_eneconv.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_enemat.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_energy.c | 55 ++++++++++--------- src/gromacs/gmxana/gmx_filter.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_genbox.cpp | 53 +++++++++--------- src/gromacs/gmxana/gmx_genconf.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_genion.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_genpr.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_gyrate.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_h2order.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_hbond.c | 55 ++++++++++--------- src/gromacs/gmxana/gmx_helix.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_helixorient.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_kinetics.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_lie.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_mdmat.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_mindist.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_morph.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_msd.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_nmeig.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_nmens.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_nmtraj.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_options.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_order.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_polystat.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_potential.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_principal.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_rama.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_rdf.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_rms.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_rmsdist.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_rmsf.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_rotacf.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_saltbr.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_sas.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_sham.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_sorient.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_spol.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_tcaf.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_traj.c | 55 ++++++++++--------- src/gromacs/gmxana/gmx_trjcat.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_trjconv.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_trjorder.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_vanhove.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_velacc.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_wham.cpp | 53 +++++++++--------- src/gromacs/gmxana/gmx_wheel.c | 52 +++++++++--------- src/gromacs/gmxana/gmx_xpm2ps.c | 52 +++++++++--------- src/gromacs/gmxana/hxprops.c | 52 +++++++++--------- src/gromacs/gmxana/hxprops.h | 52 +++++++++--------- src/gromacs/gmxana/levenmar.c | 53 +++++++++--------- src/gromacs/gmxana/nsc.c | 52 +++++++++--------- src/gromacs/gmxana/nsc.h | 50 +++++++++-------- src/gromacs/gmxana/polynomials.c | 52 +++++++++--------- src/gromacs/gmxana/pp2shift.c | 52 +++++++++--------- src/gromacs/gmxlib/3dview.c | 52 +++++++++--------- src/gromacs/gmxlib/atomprop.c | 52 +++++++++--------- src/gromacs/gmxlib/bondfree.c | 55 ++++++++++--------- src/gromacs/gmxlib/calcgrid.c | 55 ++++++++++--------- src/gromacs/gmxlib/calch.c | 52 +++++++++--------- src/gromacs/gmxlib/chargegroup.c | 55 ++++++++++--------- src/gromacs/gmxlib/cinvsqrtdata.c | 52 +++++++++--------- src/gromacs/gmxlib/copyrite.cpp | 52 +++++++++--------- src/gromacs/gmxlib/crecipdata.c | 52 +++++++++--------- src/gromacs/gmxlib/disre.c | 55 ++++++++++--------- src/gromacs/gmxlib/dlb.h | 52 +++++++++--------- src/gromacs/gmxlib/do_fit.c | 55 ++++++++++--------- src/gromacs/gmxlib/gbutil.c | 52 +++++++++--------- src/gromacs/gmxlib/gmx_fatal.c | 55 ++++++++++--------- src/gromacs/gmxlib/gmx_random.c | 54 +++++++++--------- src/gromacs/gmxlib/gmxcpp.c | 52 +++++++++--------- src/gromacs/gmxlib/index.c | 52 +++++++++--------- src/gromacs/gmxlib/inputrec.c | 55 ++++++++++--------- src/gromacs/gmxlib/invblock.c | 52 +++++++++--------- src/gromacs/gmxlib/invsqrt_test.c | 52 +++++++++--------- src/gromacs/gmxlib/main.cpp | 55 ++++++++++--------- src/gromacs/gmxlib/maths.c | 52 +++++++++--------- src/gromacs/gmxlib/md_logging.c | 55 ++++++++++--------- src/gromacs/gmxlib/minvert.h | 52 +++++++++--------- src/gromacs/gmxlib/mshift.c | 52 +++++++++--------- src/gromacs/gmxlib/mvdata.c | 54 +++++++++--------- src/gromacs/gmxlib/network.c | 54 +++++++++--------- src/gromacs/gmxlib/nonbonded/nb_free_energy.h | 51 +++++++++-------- src/gromacs/gmxlib/nonbonded/nb_generic.c | 52 +++++++++--------- src/gromacs/gmxlib/nonbonded/nb_generic.h | 51 +++++++++-------- src/gromacs/gmxlib/nonbonded/nb_generic_cg.c | 55 ++++++++++--------- src/gromacs/gmxlib/nonbonded/nb_generic_cg.h | 54 +++++++++--------- src/gromacs/gmxlib/nonbonded/nonbonded.c | 55 ++++++++++--------- src/gromacs/gmxlib/nrama.c | 52 +++++++++--------- src/gromacs/gmxlib/nrjac.c | 52 +++++++++--------- src/gromacs/gmxlib/nrnb.c | 52 +++++++++--------- src/gromacs/gmxlib/oenv.cpp | 55 ++++++++++--------- src/gromacs/gmxlib/orires.c | 55 ++++++++++--------- src/gromacs/gmxlib/pbc.c | 55 ++++++++++--------- src/gromacs/gmxlib/physics.c | 55 ++++++++++--------- src/gromacs/gmxlib/princ.c | 52 +++++++++--------- src/gromacs/gmxlib/rando.c | 52 +++++++++--------- src/gromacs/gmxlib/random.c | 52 +++++++++--------- src/gromacs/gmxlib/rbin.c | 52 +++++++++--------- src/gromacs/gmxlib/readinp.c | 52 +++++++++--------- src/gromacs/gmxlib/rmpbc.c | 55 ++++++++++--------- src/gromacs/gmxlib/sfactor.c | 52 +++++++++--------- src/gromacs/gmxlib/sighandler.c | 52 +++++++++--------- src/gromacs/gmxlib/smalloc.c | 52 +++++++++--------- src/gromacs/gmxlib/sortwater.c | 52 +++++++++--------- src/gromacs/gmxlib/splitter.c | 55 ++++++++++--------- .../gmxlib/statistics/gmx_statistics.c | 53 +++++++++--------- .../gmxlib/statistics/gmx_statistics_test.c | 54 +++++++++--------- src/gromacs/gmxlib/strdb.c | 52 +++++++++--------- src/gromacs/gmxlib/string2.c | 52 +++++++++--------- src/gromacs/gmxlib/symtab.c | 52 +++++++++--------- src/gromacs/gmxlib/topsort.c | 53 +++++++++--------- src/gromacs/gmxlib/typedefs.c | 55 ++++++++++--------- src/gromacs/gmxlib/viewit.c | 52 +++++++++--------- src/gromacs/gmxlib/warninp.c | 55 ++++++++++--------- src/gromacs/gmxlib/writeps.c | 52 +++++++++--------- src/gromacs/gmxlib/xvgr.cpp | 55 ++++++++++--------- src/gromacs/gmxpreprocess/add_par.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/add_par.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/compute_io.c | 55 ++++++++++--------- src/gromacs/gmxpreprocess/compute_io.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/gen_ad.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/gen_vsite.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/gen_vsite.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/genhydro.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/genhydro.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/gpp_atomtype.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/gpp_bond_atomtype.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/gpp_bond_atomtype.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/h_db.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/h_db.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/hackblock.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/pdb2top.cpp | 55 ++++++++++--------- src/gromacs/gmxpreprocess/pgutil.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/pgutil.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/readir.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/readpull.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/readrot.c | 50 +++++++++-------- src/gromacs/gmxpreprocess/resall.c | 55 ++++++++++--------- src/gromacs/gmxpreprocess/ter_db.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/ter_db.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/topdirs.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/topdirs.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/topexcl.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/topexcl.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/topio.c | 55 ++++++++++--------- src/gromacs/gmxpreprocess/topio.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/toppush.c | 55 ++++++++++--------- src/gromacs/gmxpreprocess/toppush.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/topshake.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/topshake.h | 52 +++++++++--------- src/gromacs/gmxpreprocess/toputil.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/vsite_parm.c | 52 +++++++++--------- src/gromacs/gmxpreprocess/vsite_parm.h | 52 +++++++++--------- src/gromacs/legacyheaders/3dview.h | 52 +++++++++--------- src/gromacs/legacyheaders/atomprop.h | 52 +++++++++--------- src/gromacs/legacyheaders/bondf.h | 52 +++++++++--------- src/gromacs/legacyheaders/calcgrid.h | 52 +++++++++--------- src/gromacs/legacyheaders/calch.h | 52 +++++++++--------- src/gromacs/legacyheaders/calcmu.h | 52 +++++++++--------- src/gromacs/legacyheaders/chargegroup.h | 52 +++++++++--------- src/gromacs/legacyheaders/checkpoint.h | 52 +++++++++--------- src/gromacs/legacyheaders/constr.h | 55 ++++++++++--------- src/gromacs/legacyheaders/copyrite.h | 52 +++++++++--------- src/gromacs/legacyheaders/disre.h | 53 +++++++++--------- src/gromacs/legacyheaders/do_fit.h | 52 +++++++++--------- src/gromacs/legacyheaders/ebin.h | 52 +++++++++--------- src/gromacs/legacyheaders/edsam.h | 52 +++++++++--------- src/gromacs/legacyheaders/force.h | 52 +++++++++--------- src/gromacs/legacyheaders/gbutil.h | 52 +++++++++--------- src/gromacs/legacyheaders/gen_ad.h | 52 +++++++++--------- src/gromacs/legacyheaders/genborn.h | 51 +++++++++-------- src/gromacs/legacyheaders/gmx_fatal.h | 53 +++++++++--------- .../legacyheaders/gmx_fatal_collective.h | 54 +++++++++--------- src/gromacs/legacyheaders/gmx_ga2la.h | 55 ++++++++++--------- src/gromacs/legacyheaders/gmx_random.h | 51 +++++++++-------- src/gromacs/legacyheaders/gmx_statistics.h | 51 +++++++++-------- src/gromacs/legacyheaders/gmxcomplex.h | 53 +++++++++--------- src/gromacs/legacyheaders/gmxcpp.h | 52 +++++++++--------- src/gromacs/legacyheaders/gpp_atomtype.h | 52 +++++++++--------- src/gromacs/legacyheaders/gpp_nextnb.h | 52 +++++++++--------- src/gromacs/legacyheaders/grompp.h | 52 +++++++++--------- src/gromacs/legacyheaders/gstat.h | 52 +++++++++--------- src/gromacs/legacyheaders/hackblock.h | 52 +++++++++--------- src/gromacs/legacyheaders/index.h | 52 +++++++++--------- src/gromacs/legacyheaders/invblock.h | 52 +++++++++--------- src/gromacs/legacyheaders/macros.h | 52 +++++++++--------- src/gromacs/legacyheaders/main.h | 52 +++++++++--------- src/gromacs/legacyheaders/maths.h | 55 ++++++++++--------- src/gromacs/legacyheaders/md_logging.h | 52 +++++++++--------- src/gromacs/legacyheaders/md_support.h | 52 +++++++++--------- src/gromacs/legacyheaders/mdatoms.h | 52 +++++++++--------- src/gromacs/legacyheaders/mdebin.h | 52 +++++++++--------- src/gromacs/legacyheaders/mdrun.h | 52 +++++++++--------- src/gromacs/legacyheaders/mshift.h | 52 +++++++++--------- src/gromacs/legacyheaders/mtop_util.h | 2 +- src/gromacs/legacyheaders/mvdata.h | 52 +++++++++--------- src/gromacs/legacyheaders/network.h | 52 +++++++++--------- src/gromacs/legacyheaders/nonbonded.h | 52 +++++++++--------- src/gromacs/legacyheaders/nrama.h | 52 +++++++++--------- src/gromacs/legacyheaders/nrjac.h | 52 +++++++++--------- src/gromacs/legacyheaders/nrnb.h | 52 +++++++++--------- src/gromacs/legacyheaders/ns.h | 52 +++++++++--------- src/gromacs/legacyheaders/nsgrid.h | 52 +++++++++--------- src/gromacs/legacyheaders/oenv.h | 52 +++++++++--------- src/gromacs/legacyheaders/orires.h | 52 +++++++++--------- src/gromacs/legacyheaders/partdec.h | 52 +++++++++--------- src/gromacs/legacyheaders/pbc.h | 52 +++++++++--------- src/gromacs/legacyheaders/pdb2top.h | 52 +++++++++--------- src/gromacs/legacyheaders/perf_est.h | 51 +++++++++-------- src/gromacs/legacyheaders/physics.h | 52 +++++++++--------- src/gromacs/legacyheaders/princ.h | 52 +++++++++--------- src/gromacs/legacyheaders/pull.h | 52 +++++++++--------- src/gromacs/legacyheaders/pull_rotation.h | 51 +++++++++-------- src/gromacs/legacyheaders/qmmm.h | 51 +++++++++-------- src/gromacs/legacyheaders/random.h | 52 +++++++++--------- src/gromacs/legacyheaders/rbin.h | 52 +++++++++--------- src/gromacs/legacyheaders/readinp.h | 52 +++++++++--------- src/gromacs/legacyheaders/resall.h | 52 +++++++++--------- src/gromacs/legacyheaders/rmpbc.h | 52 +++++++++--------- src/gromacs/legacyheaders/sfactor.h | 52 +++++++++--------- src/gromacs/legacyheaders/shellfc.h | 51 +++++++++-------- src/gromacs/legacyheaders/shift.h | 52 +++++++++--------- src/gromacs/legacyheaders/sighandler.h | 52 +++++++++--------- src/gromacs/legacyheaders/sim_util.h | 52 +++++++++--------- src/gromacs/legacyheaders/smalloc.h | 52 +++++++++--------- src/gromacs/legacyheaders/sortwater.h | 52 +++++++++--------- src/gromacs/legacyheaders/split.h | 52 +++++++++--------- src/gromacs/legacyheaders/splitter.h | 52 +++++++++--------- src/gromacs/legacyheaders/strdb.h | 52 +++++++++--------- src/gromacs/legacyheaders/symtab.h | 52 +++++++++--------- src/gromacs/legacyheaders/sysstuff.h | 52 +++++++++--------- src/gromacs/legacyheaders/tgroup.h | 52 +++++++++--------- src/gromacs/legacyheaders/toputil.h | 52 +++++++++--------- src/gromacs/legacyheaders/txtdump.h | 52 +++++++++--------- src/gromacs/legacyheaders/typedefs.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/atoms.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/block.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/constr.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/energy.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/fcdata.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/force_flags.h | 54 +++++++++--------- src/gromacs/legacyheaders/types/genborn.h | 54 +++++++++--------- src/gromacs/legacyheaders/types/globsig.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/graph.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/group.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/ifunc.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/ishift.h | 52 +++++++++--------- .../legacyheaders/types/iteratedconstraints.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/matrix.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/mdatom.h | 2 +- src/gromacs/legacyheaders/types/nblist.h | 52 +++++++++--------- .../legacyheaders/types/nlistheuristics.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/nrnb.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/ns.h | 51 +++++++++-------- src/gromacs/legacyheaders/types/nsgrid.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/oenv.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/pbc.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/qmmmrec.h | 51 +++++++++-------- src/gromacs/legacyheaders/types/shellfc.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/simple.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/state.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/symtab.h | 52 +++++++++--------- src/gromacs/legacyheaders/types/topology.h | 52 +++++++++--------- src/gromacs/legacyheaders/update.h | 52 +++++++++--------- src/gromacs/legacyheaders/vcm.h | 52 +++++++++--------- src/gromacs/legacyheaders/vec.h | 52 +++++++++--------- src/gromacs/legacyheaders/viewit.h | 52 +++++++++--------- src/gromacs/legacyheaders/vsite.h | 52 +++++++++--------- src/gromacs/legacyheaders/warninp.h | 52 +++++++++--------- src/gromacs/legacyheaders/writeps.h | 52 +++++++++--------- src/gromacs/legacyheaders/xvgr.h | 52 +++++++++--------- src/gromacs/mdlib/calcmu.c | 52 +++++++++--------- src/gromacs/mdlib/calcvir.c | 52 +++++++++--------- src/gromacs/mdlib/clincs.c | 53 +++++++++--------- src/gromacs/mdlib/constr.c | 55 ++++++++++--------- src/gromacs/mdlib/coupling.c | 54 +++++++++--------- src/gromacs/mdlib/csettle.c | 55 ++++++++++--------- src/gromacs/mdlib/ebin.c | 55 ++++++++++--------- src/gromacs/mdlib/edsam.c | 54 +++++++++--------- src/gromacs/mdlib/ewald.c | 52 +++++++++--------- src/gromacs/mdlib/genborn.c | 54 +++++++++--------- src/gromacs/mdlib/genborn_allvsall.c | 49 ++++++++++------- src/gromacs/mdlib/genborn_allvsall.h | 49 ++++++++++------- .../mdlib/genborn_allvsall_sse2_double.c | 49 ++++++++++------- .../mdlib/genborn_allvsall_sse2_double.h | 49 ++++++++++------- .../mdlib/genborn_allvsall_sse2_single.c | 49 ++++++++++------- .../mdlib/genborn_allvsall_sse2_single.h | 49 ++++++++++------- src/gromacs/mdlib/genborn_sse2_double.c | 54 +++++++++--------- src/gromacs/mdlib/genborn_sse2_double.h | 51 +++++++++-------- src/gromacs/mdlib/genborn_sse2_single.c | 51 +++++++++-------- src/gromacs/mdlib/genborn_sse2_single.h | 51 +++++++++-------- src/gromacs/mdlib/groupcoord.c | 54 +++++++++--------- src/gromacs/mdlib/groupcoord.h | 54 +++++++++--------- src/gromacs/mdlib/init.c | 55 ++++++++++--------- src/gromacs/mdlib/iteratedconstraints.c | 55 ++++++++++--------- src/gromacs/mdlib/md_support.c | 55 ++++++++++--------- src/gromacs/mdlib/mdatom.c | 2 +- src/gromacs/mdlib/mdebin_bar.c | 55 ++++++++++--------- src/gromacs/mdlib/mdebin_bar.h | 54 +++++++++--------- src/gromacs/mdlib/minimize.c | 55 ++++++++++--------- src/gromacs/mdlib/mvxvf.c | 52 +++++++++--------- src/gromacs/mdlib/nlistheuristics.c | 55 ++++++++++--------- src/gromacs/mdlib/ns.c | 55 ++++++++++--------- src/gromacs/mdlib/nsgrid.c | 55 ++++++++++--------- src/gromacs/mdlib/partdec.c | 50 +++++++++-------- src/gromacs/mdlib/perf_est.c | 54 +++++++++--------- src/gromacs/mdlib/pull.c | 55 ++++++++++--------- src/gromacs/mdlib/pull_rotation.c | 51 +++++++++-------- src/gromacs/mdlib/pullutil.c | 52 +++++++++--------- src/gromacs/mdlib/qm_gamess.c | 52 +++++++++--------- src/gromacs/mdlib/qm_gaussian.c | 52 +++++++++--------- src/gromacs/mdlib/qm_mopac.c | 52 +++++++++--------- src/gromacs/mdlib/qm_orca.c | 54 +++++++++--------- src/gromacs/mdlib/qmmm.c | 52 +++++++++--------- src/gromacs/mdlib/rf_util.c | 52 +++++++++--------- src/gromacs/mdlib/shakef.c | 55 ++++++++++--------- src/gromacs/mdlib/shellfc.c | 51 +++++++++-------- src/gromacs/mdlib/stat.c | 55 ++++++++++--------- src/gromacs/mdlib/tgroup.c | 54 +++++++++--------- src/gromacs/mdlib/tpi.c | 55 ++++++++++--------- src/gromacs/mdlib/update.c | 55 ++++++++++--------- src/gromacs/mdlib/vcm.c | 52 +++++++++--------- src/gromacs/mdlib/vsite.c | 55 ++++++++++--------- src/gromacs/mdlib/wall.c | 54 +++++++++--------- src/gromacs/mdlib/wnblist.c | 52 +++++++++--------- 361 files changed, 9719 insertions(+), 9012 deletions(-) diff --git a/.gitattributes b/.gitattributes index 8f60beff43..1b6e057703 100644 --- a/.gitattributes +++ b/.gitattributes @@ -17,6 +17,7 @@ admin/git-pre-commit filter=copyright cmake/CheckC*CompilerFlag.cmake !filter cmake/FindBLAS.cmake !filter cmake/FindLAPACK.cmake !filter +cmake/ThreadMPI.cmake !filter cmake/Platform/BluegeneQ*.cmake !filter cmake/*.c !filter cmake/*.c.cmakein !filter @@ -24,6 +25,8 @@ doxygen/*.cmakein !filter doxygen/*.cpp !filter manual/UseLATEX.cmake !filter src/contrib/* !filter +src/gromacs/gmxlib/gpu_utils/memtestG80_core.h !filter +src/gromacs/gmxlib/nonbonded/preprocessor/gmxpreprocess.py !filter src/gromacs/linearalgebra/gmx_blas/* !filter src/gromacs/linearalgebra/gmx_lapack/* !filter src/gromacs/selection/parser.cpp !filter diff --git a/src/gromacs/commandline/pargs.cpp b/src/gromacs/commandline/pargs.cpp index 2654d680f9..6b9f50ea5e 100644 --- a/src/gromacs/commandline/pargs.cpp +++ b/src/gromacs/commandline/pargs.cpp @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #include "gromacs/commandline/pargs.h" diff --git a/src/gromacs/fileio/timecontrol.c b/src/gromacs/fileio/timecontrol.c index df2fdbdb29..6d9aed6824 100644 --- a/src/gromacs/fileio/timecontrol.c +++ b/src/gromacs/fileio/timecontrol.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "gromacs/fileio/timecontrol.h" diff --git a/src/gromacs/gmxana/addconf.c b/src/gromacs/gmxana/addconf.c index 26fb2e734f..83d8f98011 100644 --- a/src/gromacs/gmxana/addconf.c +++ b/src/gromacs/gmxana/addconf.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/addconf.h b/src/gromacs/gmxana/addconf.h index a5a27e97a3..fd9187f3af 100644 --- a/src/gromacs/gmxana/addconf.h +++ b/src/gromacs/gmxana/addconf.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "typedefs.h" diff --git a/src/gromacs/gmxana/anadih.c b/src/gromacs/gmxana/anadih.c index 2377ebd8ac..2d43009309 100644 --- a/src/gromacs/gmxana/anadih.c +++ b/src/gromacs/gmxana/anadih.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/autocorr.c b/src/gromacs/gmxana/autocorr.c index a93f9a7e06..f98a670e20 100644 --- a/src/gromacs/gmxana/autocorr.c +++ b/src/gromacs/gmxana/autocorr.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/cmat.c b/src/gromacs/gmxana/cmat.c index baf258018d..ee8438f32b 100644 --- a/src/gromacs/gmxana/cmat.c +++ b/src/gromacs/gmxana/cmat.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/cmat.h b/src/gromacs/gmxana/cmat.h index 69930a48ec..e7786a1e06 100644 --- a/src/gromacs/gmxana/cmat.h +++ b/src/gromacs/gmxana/cmat.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _cmat_h diff --git a/src/gromacs/gmxana/correl.c b/src/gromacs/gmxana/correl.c index 70cc2a8bb7..a779cda9fe 100644 --- a/src/gromacs/gmxana/correl.c +++ b/src/gromacs/gmxana/correl.c @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxana/correl.h b/src/gromacs/gmxana/correl.h index 36e16e4e1f..6ce4df4d67 100644 --- a/src/gromacs/gmxana/correl.h +++ b/src/gromacs/gmxana/correl.h @@ -1,36 +1,38 @@ - /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ diff --git a/src/gromacs/gmxana/dlist.c b/src/gromacs/gmxana/dlist.c index a8d407773f..d6612958e6 100644 --- a/src/gromacs/gmxana/dlist.c +++ b/src/gromacs/gmxana/dlist.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/edittop.c b/src/gromacs/gmxana/edittop.c index 166552b5c8..9994a0c3cb 100644 --- a/src/gromacs/gmxana/edittop.c +++ b/src/gromacs/gmxana/edittop.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/eigio.c b/src/gromacs/gmxana/eigio.c index f2c3c95832..75564f67a5 100644 --- a/src/gromacs/gmxana/eigio.c +++ b/src/gromacs/gmxana/eigio.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/eigio.h b/src/gromacs/gmxana/eigio.h index 061b72e4a5..e77db733c8 100644 --- a/src/gromacs/gmxana/eigio.h +++ b/src/gromacs/gmxana/eigio.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _eigio_h diff --git a/src/gromacs/gmxana/expfit.c b/src/gromacs/gmxana/expfit.c index 3d7bb20bf6..845c3fe869 100644 --- a/src/gromacs/gmxana/expfit.c +++ b/src/gromacs/gmxana/expfit.c @@ -1,37 +1,38 @@ /* - * $Id: expfit.c,v 1.33 2005/08/29 19:39:11 lindahl Exp $ + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/fitahx.c b/src/gromacs/gmxana/fitahx.c index f4f1ac3104..8098cf2c40 100644 --- a/src/gromacs/gmxana/fitahx.c +++ b/src/gromacs/gmxana/fitahx.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/fitahx.h b/src/gromacs/gmxana/fitahx.h index ad8c6191c6..ea5bca18bb 100644 --- a/src/gromacs/gmxana/fitahx.h +++ b/src/gromacs/gmxana/fitahx.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _fitahx_h diff --git a/src/gromacs/gmxana/gmx_ana.h b/src/gromacs/gmxana/gmx_ana.h index ab1af590f8..cca738db22 100644 --- a/src/gromacs/gmxana/gmx_ana.h +++ b/src/gromacs/gmxana/gmx_ana.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gmx_ana_h diff --git a/src/gromacs/gmxana/gmx_anaeig.c b/src/gromacs/gmxana/gmx_anaeig.c index 3788f3528f..412030408e 100644 --- a/src/gromacs/gmxana/gmx_anaeig.c +++ b/src/gromacs/gmxana/gmx_anaeig.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_analyze.c b/src/gromacs/gmxana/gmx_analyze.c index fe3a4c5217..b7f7fe3ccd 100644 --- a/src/gromacs/gmxana/gmx_analyze.c +++ b/src/gromacs/gmxana/gmx_analyze.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_angle.c b/src/gromacs/gmxana/gmx_angle.c index 533a958822..e4ef6bbf4d 100644 --- a/src/gromacs/gmxana/gmx_angle.c +++ b/src/gromacs/gmxana/gmx_angle.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_bundle.c b/src/gromacs/gmxana/gmx_bundle.c index e8d9f2ce25..b6ad8fd08c 100644 --- a/src/gromacs/gmxana/gmx_bundle.c +++ b/src/gromacs/gmxana/gmx_bundle.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_chi.c b/src/gromacs/gmxana/gmx_chi.c index bed297188e..9e16688680 100644 --- a/src/gromacs/gmxana/gmx_chi.c +++ b/src/gromacs/gmxana/gmx_chi.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_cluster.c b/src/gromacs/gmxana/gmx_cluster.c index 4b58ca8531..693fbe9dce 100644 --- a/src/gromacs/gmxana/gmx_cluster.c +++ b/src/gromacs/gmxana/gmx_cluster.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_clustsize.c b/src/gromacs/gmxana/gmx_clustsize.c index 58675d93c2..ae5a1ec58e 100644 --- a/src/gromacs/gmxana/gmx_clustsize.c +++ b/src/gromacs/gmxana/gmx_clustsize.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.3.2 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2007, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2007, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_confrms.c b/src/gromacs/gmxana/gmx_confrms.c index 2f1c782789..d242b8edb5 100644 --- a/src/gromacs/gmxana/gmx_confrms.c +++ b/src/gromacs/gmxana/gmx_confrms.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_covar.c b/src/gromacs/gmxana/gmx_covar.c index 503032fc9a..c3d2c81874 100644 --- a/src/gromacs/gmxana/gmx_covar.c +++ b/src/gromacs/gmxana/gmx_covar.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_density.c b/src/gromacs/gmxana/gmx_density.c index 05d1bebcbf..f3891fcceb 100644 --- a/src/gromacs/gmxana/gmx_density.c +++ b/src/gromacs/gmxana/gmx_density.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_densmap.c b/src/gromacs/gmxana/gmx_densmap.c index 73ca5a711d..b58dea0c99 100644 --- a/src/gromacs/gmxana/gmx_densmap.c +++ b/src/gromacs/gmxana/gmx_densmap.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_dielectric.c b/src/gromacs/gmxana/gmx_dielectric.c index 25297af034..24e88c0ccd 100644 --- a/src/gromacs/gmxana/gmx_dielectric.c +++ b/src/gromacs/gmxana/gmx_dielectric.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_dipoles.cpp b/src/gromacs/gmxana/gmx_dipoles.cpp index 6cb99c72cd..61269ffbf6 100644 --- a/src/gromacs/gmxana/gmx_dipoles.cpp +++ b/src/gromacs/gmxana/gmx_dipoles.cpp @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations +/* + * This file is part of the GROMACS molecular simulation package. * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_disre.c b/src/gromacs/gmxana/gmx_disre.c index 1950b267a1..6f05124b44 100644 --- a/src/gromacs/gmxana/gmx_disre.c +++ b/src/gromacs/gmxana/gmx_disre.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_dyndom.c b/src/gromacs/gmxana/gmx_dyndom.c index bd48e1a8e2..5cbea00621 100644 --- a/src/gromacs/gmxana/gmx_dyndom.c +++ b/src/gromacs/gmxana/gmx_dyndom.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_editconf.c b/src/gromacs/gmxana/gmx_editconf.c index 407ff947af..604ce2e6d3 100644 --- a/src/gromacs/gmxana/gmx_editconf.c +++ b/src/gromacs/gmxana/gmx_editconf.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_eneconv.c b/src/gromacs/gmxana/gmx_eneconv.c index b265992d61..4c1d6ce6c7 100644 --- a/src/gromacs/gmxana/gmx_eneconv.c +++ b/src/gromacs/gmxana/gmx_eneconv.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_enemat.c b/src/gromacs/gmxana/gmx_enemat.c index c135365a9c..e29cd37cb9 100644 --- a/src/gromacs/gmxana/gmx_enemat.c +++ b/src/gromacs/gmxana/gmx_enemat.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_energy.c b/src/gromacs/gmxana/gmx_energy.c index d89dca5346..8192741d06 100644 --- a/src/gromacs/gmxana/gmx_energy.c +++ b/src/gromacs/gmxana/gmx_energy.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_filter.c b/src/gromacs/gmxana/gmx_filter.c index 67acb6d898..6147f04b7d 100644 --- a/src/gromacs/gmxana/gmx_filter.c +++ b/src/gromacs/gmxana/gmx_filter.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_genbox.cpp b/src/gromacs/gmxana/gmx_genbox.cpp index 168879b466..2ee5ea210c 100644 --- a/src/gromacs/gmxana/gmx_genbox.cpp +++ b/src/gromacs/gmxana/gmx_genbox.cpp @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- */ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_genconf.c b/src/gromacs/gmxana/gmx_genconf.c index 6871f27acd..ca89a1128f 100644 --- a/src/gromacs/gmxana/gmx_genconf.c +++ b/src/gromacs/gmxana/gmx_genconf.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_genion.c b/src/gromacs/gmxana/gmx_genion.c index d60ea75c3f..25ce591e71 100644 --- a/src/gromacs/gmxana/gmx_genion.c +++ b/src/gromacs/gmxana/gmx_genion.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_genpr.c b/src/gromacs/gmxana/gmx_genpr.c index 612285964c..0ea66458d4 100644 --- a/src/gromacs/gmxana/gmx_genpr.c +++ b/src/gromacs/gmxana/gmx_genpr.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_gyrate.c b/src/gromacs/gmxana/gmx_gyrate.c index 3fecf909cd..ed062dffaf 100644 --- a/src/gromacs/gmxana/gmx_gyrate.c +++ b/src/gromacs/gmxana/gmx_gyrate.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_h2order.c b/src/gromacs/gmxana/gmx_h2order.c index 1ff91f4976..4a186c5644 100644 --- a/src/gromacs/gmxana/gmx_h2order.c +++ b/src/gromacs/gmxana/gmx_h2order.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_hbond.c b/src/gromacs/gmxana/gmx_hbond.c index d43cfda8e5..4749adefe8 100644 --- a/src/gromacs/gmxana/gmx_hbond.c +++ b/src/gromacs/gmxana/gmx_hbond.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.3.3 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_helix.c b/src/gromacs/gmxana/gmx_helix.c index 2aa7611303..521ed5b782 100644 --- a/src/gromacs/gmxana/gmx_helix.c +++ b/src/gromacs/gmxana/gmx_helix.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_helixorient.c b/src/gromacs/gmxana/gmx_helixorient.c index bd37efecf1..7a67159d25 100644 --- a/src/gromacs/gmxana/gmx_helixorient.c +++ b/src/gromacs/gmxana/gmx_helixorient.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_kinetics.c b/src/gromacs/gmxana/gmx_kinetics.c index 784ff40f7a..fabada34e5 100644 --- a/src/gromacs/gmxana/gmx_kinetics.c +++ b/src/gromacs/gmxana/gmx_kinetics.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_lie.c b/src/gromacs/gmxana/gmx_lie.c index 250b74af90..de5fcf672f 100644 --- a/src/gromacs/gmxana/gmx_lie.c +++ b/src/gromacs/gmxana/gmx_lie.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_mdmat.c b/src/gromacs/gmxana/gmx_mdmat.c index 66cd58e226..aa710c68d6 100644 --- a/src/gromacs/gmxana/gmx_mdmat.c +++ b/src/gromacs/gmxana/gmx_mdmat.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_mindist.c b/src/gromacs/gmxana/gmx_mindist.c index 7efe2c13ba..c092a7a264 100644 --- a/src/gromacs/gmxana/gmx_mindist.c +++ b/src/gromacs/gmxana/gmx_mindist.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_morph.c b/src/gromacs/gmxana/gmx_morph.c index aee47d1088..2a6da609bb 100644 --- a/src/gromacs/gmxana/gmx_morph.c +++ b/src/gromacs/gmxana/gmx_morph.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_msd.c b/src/gromacs/gmxana/gmx_msd.c index e94a88a345..e8afb65e33 100644 --- a/src/gromacs/gmxana/gmx_msd.c +++ b/src/gromacs/gmxana/gmx_msd.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_nmeig.c b/src/gromacs/gmxana/gmx_nmeig.c index c2d485bc69..ed2be1ace0 100644 --- a/src/gromacs/gmxana/gmx_nmeig.c +++ b/src/gromacs/gmxana/gmx_nmeig.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_nmens.c b/src/gromacs/gmxana/gmx_nmens.c index 6142ba12df..0693572647 100644 --- a/src/gromacs/gmxana/gmx_nmens.c +++ b/src/gromacs/gmxana/gmx_nmens.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_nmtraj.c b/src/gromacs/gmxana/gmx_nmtraj.c index 090c5f70ce..f2011568e6 100644 --- a/src/gromacs/gmxana/gmx_nmtraj.c +++ b/src/gromacs/gmxana/gmx_nmtraj.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_options.c b/src/gromacs/gmxana/gmx_options.c index 1af1626628..10112a203b 100644 --- a/src/gromacs/gmxana/gmx_options.c +++ b/src/gromacs/gmxana/gmx_options.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.3.99_development_20071104 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2006, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2006, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_order.c b/src/gromacs/gmxana/gmx_order.c index dd5096689c..ecb42bccfd 100644 --- a/src/gromacs/gmxana/gmx_order.c +++ b/src/gromacs/gmxana/gmx_order.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_polystat.c b/src/gromacs/gmxana/gmx_polystat.c index 113cf0e9d0..66c3887a46 100644 --- a/src/gromacs/gmxana/gmx_polystat.c +++ b/src/gromacs/gmxana/gmx_polystat.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_potential.c b/src/gromacs/gmxana/gmx_potential.c index f762d062a7..88fdfa31a1 100644 --- a/src/gromacs/gmxana/gmx_potential.c +++ b/src/gromacs/gmxana/gmx_potential.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_principal.c b/src/gromacs/gmxana/gmx_principal.c index 261172511b..ae1c6d35f9 100644 --- a/src/gromacs/gmxana/gmx_principal.c +++ b/src/gromacs/gmxana/gmx_principal.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_rama.c b/src/gromacs/gmxana/gmx_rama.c index 91aa83ec76..3a86410ab2 100644 --- a/src/gromacs/gmxana/gmx_rama.c +++ b/src/gromacs/gmxana/gmx_rama.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_rdf.c b/src/gromacs/gmxana/gmx_rdf.c index a472562f9d..b00b69bcf9 100644 --- a/src/gromacs/gmxana/gmx_rdf.c +++ b/src/gromacs/gmxana/gmx_rdf.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxana/gmx_rms.c b/src/gromacs/gmxana/gmx_rms.c index 1ac926067d..0670e75607 100644 --- a/src/gromacs/gmxana/gmx_rms.c +++ b/src/gromacs/gmxana/gmx_rms.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_rmsdist.c b/src/gromacs/gmxana/gmx_rmsdist.c index 91b68b7a72..a6d7ed0414 100644 --- a/src/gromacs/gmxana/gmx_rmsdist.c +++ b/src/gromacs/gmxana/gmx_rmsdist.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_rmsf.c b/src/gromacs/gmxana/gmx_rmsf.c index fd09c92312..7d52abe5d4 100644 --- a/src/gromacs/gmxana/gmx_rmsf.c +++ b/src/gromacs/gmxana/gmx_rmsf.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_rotacf.c b/src/gromacs/gmxana/gmx_rotacf.c index 3e8884bab4..18c9972e93 100644 --- a/src/gromacs/gmxana/gmx_rotacf.c +++ b/src/gromacs/gmxana/gmx_rotacf.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_saltbr.c b/src/gromacs/gmxana/gmx_saltbr.c index 99b68a7345..3fac904139 100644 --- a/src/gromacs/gmxana/gmx_saltbr.c +++ b/src/gromacs/gmxana/gmx_saltbr.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_sas.c b/src/gromacs/gmxana/gmx_sas.c index 5ece69092c..6715fa6e1d 100644 --- a/src/gromacs/gmxana/gmx_sas.c +++ b/src/gromacs/gmxana/gmx_sas.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.3.2 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2007, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2007, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_sham.c b/src/gromacs/gmxana/gmx_sham.c index 53f3082132..9cb4f84377 100644 --- a/src/gromacs/gmxana/gmx_sham.c +++ b/src/gromacs/gmxana/gmx_sham.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_sorient.c b/src/gromacs/gmxana/gmx_sorient.c index 158934e7de..ee20a4907f 100644 --- a/src/gromacs/gmxana/gmx_sorient.c +++ b/src/gromacs/gmxana/gmx_sorient.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_spol.c b/src/gromacs/gmxana/gmx_spol.c index ed5f11ebe9..62b1569857 100644 --- a/src/gromacs/gmxana/gmx_spol.c +++ b/src/gromacs/gmxana/gmx_spol.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_tcaf.c b/src/gromacs/gmxana/gmx_tcaf.c index 46d8e042be..17699f89e6 100644 --- a/src/gromacs/gmxana/gmx_tcaf.c +++ b/src/gromacs/gmxana/gmx_tcaf.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_traj.c b/src/gromacs/gmxana/gmx_traj.c index fe09efe50e..31f90f2946 100644 --- a/src/gromacs/gmxana/gmx_traj.c +++ b/src/gromacs/gmxana/gmx_traj.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_trjcat.c b/src/gromacs/gmxana/gmx_trjcat.c index 7c966344ef..1b843169da 100644 --- a/src/gromacs/gmxana/gmx_trjcat.c +++ b/src/gromacs/gmxana/gmx_trjcat.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_trjconv.c b/src/gromacs/gmxana/gmx_trjconv.c index e78459b1a8..778cb90e98 100644 --- a/src/gromacs/gmxana/gmx_trjconv.c +++ b/src/gromacs/gmxana/gmx_trjconv.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_trjorder.c b/src/gromacs/gmxana/gmx_trjorder.c index d75f8b5bc2..4d089c8274 100644 --- a/src/gromacs/gmxana/gmx_trjorder.c +++ b/src/gromacs/gmxana/gmx_trjorder.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_vanhove.c b/src/gromacs/gmxana/gmx_vanhove.c index fb39af1601..dbb21a5978 100644 --- a/src/gromacs/gmxana/gmx_vanhove.c +++ b/src/gromacs/gmxana/gmx_vanhove.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_velacc.c b/src/gromacs/gmxana/gmx_velacc.c index d462861da4..41cfcf15ac 100644 --- a/src/gromacs/gmxana/gmx_velacc.c +++ b/src/gromacs/gmxana/gmx_velacc.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_wham.cpp b/src/gromacs/gmxana/gmx_wham.cpp index 7119bf4723..d0c513bbca 100644 --- a/src/gromacs/gmxana/gmx_wham.cpp +++ b/src/gromacs/gmxana/gmx_wham.cpp @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- */ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /*! \internal \file diff --git a/src/gromacs/gmxana/gmx_wheel.c b/src/gromacs/gmxana/gmx_wheel.c index d8df46c0b1..288a10a62f 100644 --- a/src/gromacs/gmxana/gmx_wheel.c +++ b/src/gromacs/gmxana/gmx_wheel.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/gmx_xpm2ps.c b/src/gromacs/gmxana/gmx_xpm2ps.c index bc92e647f6..6a8f4bc976 100644 --- a/src/gromacs/gmxana/gmx_xpm2ps.c +++ b/src/gromacs/gmxana/gmx_xpm2ps.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/hxprops.c b/src/gromacs/gmxana/hxprops.c index 21d01f6281..b9e80ba90a 100644 --- a/src/gromacs/gmxana/hxprops.c +++ b/src/gromacs/gmxana/hxprops.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/hxprops.h b/src/gromacs/gmxana/hxprops.h index 033e9e35ad..08c705b027 100644 --- a/src/gromacs/gmxana/hxprops.h +++ b/src/gromacs/gmxana/hxprops.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _hxprops_h diff --git a/src/gromacs/gmxana/levenmar.c b/src/gromacs/gmxana/levenmar.c index 85917429eb..b1f6502770 100644 --- a/src/gromacs/gmxana/levenmar.c +++ b/src/gromacs/gmxana/levenmar.c @@ -1,37 +1,38 @@ /* - * $Id: levenmar.c,v 1.20 2004/01/23 18:11:02 lindahl Exp $ + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/nsc.c b/src/gromacs/gmxana/nsc.c index 35492ac6eb..ece162dd3b 100644 --- a/src/gromacs/gmxana/nsc.c +++ b/src/gromacs/gmxana/nsc.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.3.2 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2007, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2007, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/nsc.h b/src/gromacs/gmxana/nsc.h index 29f0dcbbb7..929ff6f9ae 100644 --- a/src/gromacs/gmxana/nsc.h +++ b/src/gromacs/gmxana/nsc.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "typedefs.h" diff --git a/src/gromacs/gmxana/polynomials.c b/src/gromacs/gmxana/polynomials.c index b311db86f6..de47f1aa7a 100644 --- a/src/gromacs/gmxana/polynomials.c +++ b/src/gromacs/gmxana/polynomials.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxana/pp2shift.c b/src/gromacs/gmxana/pp2shift.c index 74a811966a..aec07370c0 100644 --- a/src/gromacs/gmxana/pp2shift.c +++ b/src/gromacs/gmxana/pp2shift.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/3dview.c b/src/gromacs/gmxlib/3dview.c index 32236ac27b..d78cd27b47 100644 --- a/src/gromacs/gmxlib/3dview.c +++ b/src/gromacs/gmxlib/3dview.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/atomprop.c b/src/gromacs/gmxlib/atomprop.c index 10e4a97d01..317d4d9f13 100644 --- a/src/gromacs/gmxlib/atomprop.c +++ b/src/gromacs/gmxlib/atomprop.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/bondfree.c b/src/gromacs/gmxlib/bondfree.c index 38c4c90372..47012964e1 100644 --- a/src/gromacs/gmxlib/bondfree.c +++ b/src/gromacs/gmxlib/bondfree.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- - * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations +/* + * This file is part of the GROMACS molecular simulation package. * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/calcgrid.c b/src/gromacs/gmxlib/calcgrid.c index 3a8a6f3513..15ee221fbb 100644 --- a/src/gromacs/gmxlib/calcgrid.c +++ b/src/gromacs/gmxlib/calcgrid.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/calch.c b/src/gromacs/gmxlib/calch.c index 2a038112d9..6ceba9282a 100644 --- a/src/gromacs/gmxlib/calch.c +++ b/src/gromacs/gmxlib/calch.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/chargegroup.c b/src/gromacs/gmxlib/chargegroup.c index 4f0277d6cd..6265c7836d 100644 --- a/src/gromacs/gmxlib/chargegroup.c +++ b/src/gromacs/gmxlib/chargegroup.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/cinvsqrtdata.c b/src/gromacs/gmxlib/cinvsqrtdata.c index e4bccbbb1f..77ca8d3572 100644 --- a/src/gromacs/gmxlib/cinvsqrtdata.c +++ b/src/gromacs/gmxlib/cinvsqrtdata.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/copyrite.cpp b/src/gromacs/gmxlib/copyrite.cpp index 1f84803c70..33d50dbf35 100644 --- a/src/gromacs/gmxlib/copyrite.cpp +++ b/src/gromacs/gmxlib/copyrite.cpp @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "copyrite.h" diff --git a/src/gromacs/gmxlib/crecipdata.c b/src/gromacs/gmxlib/crecipdata.c index e4919d5b82..e80e3876c9 100644 --- a/src/gromacs/gmxlib/crecipdata.c +++ b/src/gromacs/gmxlib/crecipdata.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ diff --git a/src/gromacs/gmxlib/disre.c b/src/gromacs/gmxlib/disre.c index ad4e54aa3a..e2f9a6f716 100644 --- a/src/gromacs/gmxlib/disre.c +++ b/src/gromacs/gmxlib/disre.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/dlb.h b/src/gromacs/gmxlib/dlb.h index 0612aab1b6..b730bd1473 100644 --- a/src/gromacs/gmxlib/dlb.h +++ b/src/gromacs/gmxlib/dlb.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _dlb_h diff --git a/src/gromacs/gmxlib/do_fit.c b/src/gromacs/gmxlib/do_fit.c index 09a39fa714..81f597aff9 100644 --- a/src/gromacs/gmxlib/do_fit.c +++ b/src/gromacs/gmxlib/do_fit.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/gbutil.c b/src/gromacs/gmxlib/gbutil.c index 9cee81c08a..31a1a6c4e2 100644 --- a/src/gromacs/gmxlib/gbutil.c +++ b/src/gromacs/gmxlib/gbutil.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/gmx_fatal.c b/src/gromacs/gmxlib/gmx_fatal.c index 2b82bdc7dc..5b593a4153 100644 --- a/src/gromacs/gmxlib/gmx_fatal.c +++ b/src/gromacs/gmxlib/gmx_fatal.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- - * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations +/* + * This file is part of the GROMACS molecular simulation package. * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/gmx_random.c b/src/gromacs/gmxlib/gmx_random.c index 6b4a8562ea..58efa528ab 100644 --- a/src/gromacs/gmxlib/gmx_random.c +++ b/src/gromacs/gmxlib/gmx_random.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 4.5 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/gmxcpp.c b/src/gromacs/gmxlib/gmxcpp.c index b3cc3fa06e..cb93732416 100644 --- a/src/gromacs/gmxlib/gmxcpp.c +++ b/src/gromacs/gmxlib/gmxcpp.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/index.c b/src/gromacs/gmxlib/index.c index 75beae3a56..59eeae35c0 100644 --- a/src/gromacs/gmxlib/index.c +++ b/src/gromacs/gmxlib/index.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/inputrec.c b/src/gromacs/gmxlib/inputrec.c index 103c516894..7514fad18e 100644 --- a/src/gromacs/gmxlib/inputrec.c +++ b/src/gromacs/gmxlib/inputrec.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 4.5 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2010, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2010, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/invblock.c b/src/gromacs/gmxlib/invblock.c index 0b71d49371..646cf70311 100644 --- a/src/gromacs/gmxlib/invblock.c +++ b/src/gromacs/gmxlib/invblock.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/invsqrt_test.c b/src/gromacs/gmxlib/invsqrt_test.c index e4d74e3572..869f3bd7db 100644 --- a/src/gromacs/gmxlib/invsqrt_test.c +++ b/src/gromacs/gmxlib/invsqrt_test.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/main.cpp b/src/gromacs/gmxlib/main.cpp index 677874faca..69c0b752cd 100644 --- a/src/gromacs/gmxlib/main.cpp +++ b/src/gromacs/gmxlib/main.cpp @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/maths.c b/src/gromacs/gmxlib/maths.c index 8cdeecd000..2a27bf746b 100644 --- a/src/gromacs/gmxlib/maths.c +++ b/src/gromacs/gmxlib/maths.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/md_logging.c b/src/gromacs/gmxlib/md_logging.c index d68cb5dff4..cb6f5552f7 100644 --- a/src/gromacs/gmxlib/md_logging.c +++ b/src/gromacs/gmxlib/md_logging.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/minvert.h b/src/gromacs/gmxlib/minvert.h index 8bd6299987..ae466aa448 100644 --- a/src/gromacs/gmxlib/minvert.h +++ b/src/gromacs/gmxlib/minvert.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _minvert_h diff --git a/src/gromacs/gmxlib/mshift.c b/src/gromacs/gmxlib/mshift.c index e8f5c96a26..ec0bc79c2e 100644 --- a/src/gromacs/gmxlib/mshift.c +++ b/src/gromacs/gmxlib/mshift.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/mvdata.c b/src/gromacs/gmxlib/mvdata.c index 193dd02a1f..d383740c1f 100644 --- a/src/gromacs/gmxlib/mvdata.c +++ b/src/gromacs/gmxlib/mvdata.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/network.c b/src/gromacs/gmxlib/network.c index bf3e71c8ff..c47bbbceb9 100644 --- a/src/gromacs/gmxlib/network.c +++ b/src/gromacs/gmxlib/network.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/nonbonded/nb_free_energy.h b/src/gromacs/gmxlib/nonbonded/nb_free_energy.h index 8e107a88b8..14ba7a3978 100644 --- a/src/gromacs/gmxlib/nonbonded/nb_free_energy.h +++ b/src/gromacs/gmxlib/nonbonded/nb_free_energy.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nb_free_energy_h_ diff --git a/src/gromacs/gmxlib/nonbonded/nb_generic.c b/src/gromacs/gmxlib/nonbonded/nb_generic.c index bb3ec449c4..23991f979a 100644 --- a/src/gromacs/gmxlib/nonbonded/nb_generic.c +++ b/src/gromacs/gmxlib/nonbonded/nb_generic.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/nonbonded/nb_generic.h b/src/gromacs/gmxlib/nonbonded/nb_generic.h index c5933d146e..6f03caa8a3 100644 --- a/src/gromacs/gmxlib/nonbonded/nb_generic.h +++ b/src/gromacs/gmxlib/nonbonded/nb_generic.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nb_generic_h_ diff --git a/src/gromacs/gmxlib/nonbonded/nb_generic_cg.c b/src/gromacs/gmxlib/nonbonded/nb_generic_cg.c index cc24267d11..f09dc0da9f 100644 --- a/src/gromacs/gmxlib/nonbonded/nb_generic_cg.c +++ b/src/gromacs/gmxlib/nonbonded/nb_generic_cg.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/nonbonded/nb_generic_cg.h b/src/gromacs/gmxlib/nonbonded/nb_generic_cg.h index 65f5acce27..6dec55a30f 100644 --- a/src/gromacs/gmxlib/nonbonded/nb_generic_cg.h +++ b/src/gromacs/gmxlib/nonbonded/nb_generic_cg.h @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nb_generic_cg_h_ diff --git a/src/gromacs/gmxlib/nonbonded/nonbonded.c b/src/gromacs/gmxlib/nonbonded/nonbonded.c index b80eeff02a..f2d6c6dd63 100644 --- a/src/gromacs/gmxlib/nonbonded/nonbonded.c +++ b/src/gromacs/gmxlib/nonbonded/nonbonded.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/nrama.c b/src/gromacs/gmxlib/nrama.c index 4bf5f2dd05..8f036ec4d4 100644 --- a/src/gromacs/gmxlib/nrama.c +++ b/src/gromacs/gmxlib/nrama.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/nrjac.c b/src/gromacs/gmxlib/nrjac.c index 93ade98074..cd392aa509 100644 --- a/src/gromacs/gmxlib/nrjac.c +++ b/src/gromacs/gmxlib/nrjac.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/nrnb.c b/src/gromacs/gmxlib/nrnb.c index 7b0a7cb029..b65d1ed7ea 100644 --- a/src/gromacs/gmxlib/nrnb.c +++ b/src/gromacs/gmxlib/nrnb.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/oenv.cpp b/src/gromacs/gmxlib/oenv.cpp index 8a86133c67..caaf15a3d9 100644 --- a/src/gromacs/gmxlib/oenv.cpp +++ b/src/gromacs/gmxlib/oenv.cpp @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "oenv.h" diff --git a/src/gromacs/gmxlib/orires.c b/src/gromacs/gmxlib/orires.c index a0c2a4faf0..b354453c94 100644 --- a/src/gromacs/gmxlib/orires.c +++ b/src/gromacs/gmxlib/orires.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/pbc.c b/src/gromacs/gmxlib/pbc.c index 3dc6092ebd..6e65c2ffc2 100644 --- a/src/gromacs/gmxlib/pbc.c +++ b/src/gromacs/gmxlib/pbc.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/physics.c b/src/gromacs/gmxlib/physics.c index b1feda4004..1fc2426dff 100644 --- a/src/gromacs/gmxlib/physics.c +++ b/src/gromacs/gmxlib/physics.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- - * $Id: molprop_util.c,v 1.51 2009/06/01 06:13:18 spoel Exp $ +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 4.0.99 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include #include "string2.h" diff --git a/src/gromacs/gmxlib/princ.c b/src/gromacs/gmxlib/princ.c index 2f1e3192c9..006e16ff30 100644 --- a/src/gromacs/gmxlib/princ.c +++ b/src/gromacs/gmxlib/princ.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/rando.c b/src/gromacs/gmxlib/rando.c index 3b6d9ed6ac..c70359828c 100644 --- a/src/gromacs/gmxlib/rando.c +++ b/src/gromacs/gmxlib/rando.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/random.c b/src/gromacs/gmxlib/random.c index 6cc4eb4378..6da24f1344 100644 --- a/src/gromacs/gmxlib/random.c +++ b/src/gromacs/gmxlib/random.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/rbin.c b/src/gromacs/gmxlib/rbin.c index 1e1a99b804..047bb9f4d4 100644 --- a/src/gromacs/gmxlib/rbin.c +++ b/src/gromacs/gmxlib/rbin.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/readinp.c b/src/gromacs/gmxlib/readinp.c index 9875d87a83..514e28d8e1 100644 --- a/src/gromacs/gmxlib/readinp.c +++ b/src/gromacs/gmxlib/readinp.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/rmpbc.c b/src/gromacs/gmxlib/rmpbc.c index 4545df1298..8bce3d2f5e 100644 --- a/src/gromacs/gmxlib/rmpbc.c +++ b/src/gromacs/gmxlib/rmpbc.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/sfactor.c b/src/gromacs/gmxlib/sfactor.c index e5778643e5..52f7360210 100644 --- a/src/gromacs/gmxlib/sfactor.c +++ b/src/gromacs/gmxlib/sfactor.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/sighandler.c b/src/gromacs/gmxlib/sighandler.c index b7215c926d..841b43e35e 100644 --- a/src/gromacs/gmxlib/sighandler.c +++ b/src/gromacs/gmxlib/sighandler.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/smalloc.c b/src/gromacs/gmxlib/smalloc.c index e1de2f7d32..6bad4efb21 100644 --- a/src/gromacs/gmxlib/smalloc.c +++ b/src/gromacs/gmxlib/smalloc.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/sortwater.c b/src/gromacs/gmxlib/sortwater.c index 0ff3c2ae53..6bd968fc41 100644 --- a/src/gromacs/gmxlib/sortwater.c +++ b/src/gromacs/gmxlib/sortwater.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/splitter.c b/src/gromacs/gmxlib/splitter.c index d296581e0f..6e8ef5bbc9 100644 --- a/src/gromacs/gmxlib/splitter.c +++ b/src/gromacs/gmxlib/splitter.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/statistics/gmx_statistics.c b/src/gromacs/gmxlib/statistics/gmx_statistics.c index be25ede6af..fb8726ffdc 100644 --- a/src/gromacs/gmxlib/statistics/gmx_statistics.c +++ b/src/gromacs/gmxlib/statistics/gmx_statistics.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- */ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/statistics/gmx_statistics_test.c b/src/gromacs/gmxlib/statistics/gmx_statistics_test.c index 0f7bbe0214..6742737aa2 100644 --- a/src/gromacs/gmxlib/statistics/gmx_statistics_test.c +++ b/src/gromacs/gmxlib/statistics/gmx_statistics_test.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 4.5 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/strdb.c b/src/gromacs/gmxlib/strdb.c index da16e9aada..f7aacb6bb3 100644 --- a/src/gromacs/gmxlib/strdb.c +++ b/src/gromacs/gmxlib/strdb.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/string2.c b/src/gromacs/gmxlib/string2.c index 22a84adb50..95ef9d165e 100644 --- a/src/gromacs/gmxlib/string2.c +++ b/src/gromacs/gmxlib/string2.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/symtab.c b/src/gromacs/gmxlib/symtab.c index 7961ec24f8..b634ddd274 100644 --- a/src/gromacs/gmxlib/symtab.c +++ b/src/gromacs/gmxlib/symtab.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/topsort.c b/src/gromacs/gmxlib/topsort.c index c6c976ed5d..cf247c7a69 100644 --- a/src/gromacs/gmxlib/topsort.c +++ b/src/gromacs/gmxlib/topsort.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- */ - /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/typedefs.c b/src/gromacs/gmxlib/typedefs.c index 3be1ea2cf0..2baa1fac04 100644 --- a/src/gromacs/gmxlib/typedefs.c +++ b/src/gromacs/gmxlib/typedefs.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/viewit.c b/src/gromacs/gmxlib/viewit.c index 44c741ffb4..8ecd5e1aa3 100644 --- a/src/gromacs/gmxlib/viewit.c +++ b/src/gromacs/gmxlib/viewit.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxlib/warninp.c b/src/gromacs/gmxlib/warninp.c index a413dca335..1ff1b5b00e 100644 --- a/src/gromacs/gmxlib/warninp.c +++ b/src/gromacs/gmxlib/warninp.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/writeps.c b/src/gromacs/gmxlib/writeps.c index 343f054d26..9e68e7d87e 100644 --- a/src/gromacs/gmxlib/writeps.c +++ b/src/gromacs/gmxlib/writeps.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxlib/xvgr.cpp b/src/gromacs/gmxlib/xvgr.cpp index fce69d7ba9..4200956342 100644 --- a/src/gromacs/gmxlib/xvgr.cpp +++ b/src/gromacs/gmxlib/xvgr.cpp @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/add_par.c b/src/gromacs/gmxpreprocess/add_par.c index cea648b81e..a034b5aeb1 100644 --- a/src/gromacs/gmxpreprocess/add_par.c +++ b/src/gromacs/gmxpreprocess/add_par.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxpreprocess/add_par.h b/src/gromacs/gmxpreprocess/add_par.h index a6f52f35ee..0ec234a04c 100644 --- a/src/gromacs/gmxpreprocess/add_par.h +++ b/src/gromacs/gmxpreprocess/add_par.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _add_par_h diff --git a/src/gromacs/gmxpreprocess/compute_io.c b/src/gromacs/gmxpreprocess/compute_io.c index 4aa450fe34..f98500e175 100644 --- a/src/gromacs/gmxpreprocess/compute_io.c +++ b/src/gromacs/gmxpreprocess/compute_io.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/compute_io.h b/src/gromacs/gmxpreprocess/compute_io.h index 2bcb4544cc..c6837d1e3a 100644 --- a/src/gromacs/gmxpreprocess/compute_io.h +++ b/src/gromacs/gmxpreprocess/compute_io.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _compute_io_h diff --git a/src/gromacs/gmxpreprocess/gen_ad.c b/src/gromacs/gmxpreprocess/gen_ad.c index c51603611e..adee8b11b5 100644 --- a/src/gromacs/gmxpreprocess/gen_ad.c +++ b/src/gromacs/gmxpreprocess/gen_ad.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxpreprocess/gen_vsite.c b/src/gromacs/gmxpreprocess/gen_vsite.c index e9d1558f1d..106f23877e 100644 --- a/src/gromacs/gmxpreprocess/gen_vsite.c +++ b/src/gromacs/gmxpreprocess/gen_vsite.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/gen_vsite.h b/src/gromacs/gmxpreprocess/gen_vsite.h index ffd8f4f1b7..b922dae01c 100644 --- a/src/gromacs/gmxpreprocess/gen_vsite.h +++ b/src/gromacs/gmxpreprocess/gen_vsite.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gen_vsite_h diff --git a/src/gromacs/gmxpreprocess/genhydro.c b/src/gromacs/gmxpreprocess/genhydro.c index 42af6b30ed..dd4f770708 100644 --- a/src/gromacs/gmxpreprocess/genhydro.c +++ b/src/gromacs/gmxpreprocess/genhydro.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/genhydro.h b/src/gromacs/gmxpreprocess/genhydro.h index c44412edbb..97a286f984 100644 --- a/src/gromacs/gmxpreprocess/genhydro.h +++ b/src/gromacs/gmxpreprocess/genhydro.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _genhydro_h diff --git a/src/gromacs/gmxpreprocess/gpp_atomtype.c b/src/gromacs/gmxpreprocess/gpp_atomtype.c index 7fd2718dee..8143f63f1a 100644 --- a/src/gromacs/gmxpreprocess/gpp_atomtype.c +++ b/src/gromacs/gmxpreprocess/gpp_atomtype.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/gpp_bond_atomtype.c b/src/gromacs/gmxpreprocess/gpp_bond_atomtype.c index 14d49490bf..c8b82d91be 100644 --- a/src/gromacs/gmxpreprocess/gpp_bond_atomtype.c +++ b/src/gromacs/gmxpreprocess/gpp_bond_atomtype.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/gpp_bond_atomtype.h b/src/gromacs/gmxpreprocess/gpp_bond_atomtype.h index 5fb99a6212..f3a05be23d 100644 --- a/src/gromacs/gmxpreprocess/gpp_bond_atomtype.h +++ b/src/gromacs/gmxpreprocess/gpp_bond_atomtype.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gpp_bondatomtype_h diff --git a/src/gromacs/gmxpreprocess/h_db.c b/src/gromacs/gmxpreprocess/h_db.c index 606ac4cb32..f81db3a123 100644 --- a/src/gromacs/gmxpreprocess/h_db.c +++ b/src/gromacs/gmxpreprocess/h_db.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxpreprocess/h_db.h b/src/gromacs/gmxpreprocess/h_db.h index 26af9f990d..7520f7f743 100644 --- a/src/gromacs/gmxpreprocess/h_db.h +++ b/src/gromacs/gmxpreprocess/h_db.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _h_db_h diff --git a/src/gromacs/gmxpreprocess/hackblock.c b/src/gromacs/gmxpreprocess/hackblock.c index f24e0ab986..3dee9b44de 100644 --- a/src/gromacs/gmxpreprocess/hackblock.c +++ b/src/gromacs/gmxpreprocess/hackblock.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxpreprocess/pdb2top.cpp b/src/gromacs/gmxpreprocess/pdb2top.cpp index c0b5b25c46..bcbfc5857f 100644 --- a/src/gromacs/gmxpreprocess/pdb2top.cpp +++ b/src/gromacs/gmxpreprocess/pdb2top.cpp @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/pgutil.c b/src/gromacs/gmxpreprocess/pgutil.c index 8b19d9d43e..9d154cd179 100644 --- a/src/gromacs/gmxpreprocess/pgutil.c +++ b/src/gromacs/gmxpreprocess/pgutil.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ diff --git a/src/gromacs/gmxpreprocess/pgutil.h b/src/gromacs/gmxpreprocess/pgutil.h index e193ee10ee..0e7340a116 100644 --- a/src/gromacs/gmxpreprocess/pgutil.h +++ b/src/gromacs/gmxpreprocess/pgutil.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _pgutil_h diff --git a/src/gromacs/gmxpreprocess/readir.h b/src/gromacs/gmxpreprocess/readir.h index 8dcaa6ed5d..ed679a14cd 100644 --- a/src/gromacs/gmxpreprocess/readir.h +++ b/src/gromacs/gmxpreprocess/readir.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _readir_h diff --git a/src/gromacs/gmxpreprocess/readpull.c b/src/gromacs/gmxpreprocess/readpull.c index 53b9f46eb7..6bec3ca392 100644 --- a/src/gromacs/gmxpreprocess/readpull.c +++ b/src/gromacs/gmxpreprocess/readpull.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/readrot.c b/src/gromacs/gmxpreprocess/readrot.c index 1f9837e9c3..468f5f8116 100644 --- a/src/gromacs/gmxpreprocess/readrot.c +++ b/src/gromacs/gmxpreprocess/readrot.c @@ -1,34 +1,38 @@ /* - * This source code is part of + * This file is part of the GROMACS molecular simulation package. * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/resall.c b/src/gromacs/gmxpreprocess/resall.c index 5c5fbfcb05..4fee4db981 100644 --- a/src/gromacs/gmxpreprocess/resall.c +++ b/src/gromacs/gmxpreprocess/resall.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/ter_db.c b/src/gromacs/gmxpreprocess/ter_db.c index 342b27c6d8..147d2ecf88 100644 --- a/src/gromacs/gmxpreprocess/ter_db.c +++ b/src/gromacs/gmxpreprocess/ter_db.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/ter_db.h b/src/gromacs/gmxpreprocess/ter_db.h index b2716cc0dc..63c8279fdc 100644 --- a/src/gromacs/gmxpreprocess/ter_db.h +++ b/src/gromacs/gmxpreprocess/ter_db.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _ter_db_h diff --git a/src/gromacs/gmxpreprocess/topdirs.c b/src/gromacs/gmxpreprocess/topdirs.c index 00bfb9e9af..335d3500ef 100644 --- a/src/gromacs/gmxpreprocess/topdirs.c +++ b/src/gromacs/gmxpreprocess/topdirs.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/topdirs.h b/src/gromacs/gmxpreprocess/topdirs.h index 17889d75e8..cff5b836f3 100644 --- a/src/gromacs/gmxpreprocess/topdirs.h +++ b/src/gromacs/gmxpreprocess/topdirs.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _topdirs_h diff --git a/src/gromacs/gmxpreprocess/topexcl.c b/src/gromacs/gmxpreprocess/topexcl.c index cfb0ae7a00..df88e84ee6 100644 --- a/src/gromacs/gmxpreprocess/topexcl.c +++ b/src/gromacs/gmxpreprocess/topexcl.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxpreprocess/topexcl.h b/src/gromacs/gmxpreprocess/topexcl.h index 104d68c91f..c48abdf2d7 100644 --- a/src/gromacs/gmxpreprocess/topexcl.h +++ b/src/gromacs/gmxpreprocess/topexcl.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _topexcl_h diff --git a/src/gromacs/gmxpreprocess/topio.c b/src/gromacs/gmxpreprocess/topio.c index 7cd2bc23d2..eb1a8758e7 100644 --- a/src/gromacs/gmxpreprocess/topio.c +++ b/src/gromacs/gmxpreprocess/topio.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/topio.h b/src/gromacs/gmxpreprocess/topio.h index cec27644a1..11423a801a 100644 --- a/src/gromacs/gmxpreprocess/topio.h +++ b/src/gromacs/gmxpreprocess/topio.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _topio_h diff --git a/src/gromacs/gmxpreprocess/toppush.c b/src/gromacs/gmxpreprocess/toppush.c index c823fb3867..88a16f6d26 100644 --- a/src/gromacs/gmxpreprocess/toppush.c +++ b/src/gromacs/gmxpreprocess/toppush.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/toppush.h b/src/gromacs/gmxpreprocess/toppush.h index c5851d3d31..2f0294513e 100644 --- a/src/gromacs/gmxpreprocess/toppush.h +++ b/src/gromacs/gmxpreprocess/toppush.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _toppush_h diff --git a/src/gromacs/gmxpreprocess/topshake.c b/src/gromacs/gmxpreprocess/topshake.c index f378850b3e..cee95306e8 100644 --- a/src/gromacs/gmxpreprocess/topshake.c +++ b/src/gromacs/gmxpreprocess/topshake.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/gmxpreprocess/topshake.h b/src/gromacs/gmxpreprocess/topshake.h index 6e7db7522c..3d78c1acae 100644 --- a/src/gromacs/gmxpreprocess/topshake.h +++ b/src/gromacs/gmxpreprocess/topshake.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _topshake_h diff --git a/src/gromacs/gmxpreprocess/toputil.c b/src/gromacs/gmxpreprocess/toputil.c index ae316dc2e5..2fe21a6eeb 100644 --- a/src/gromacs/gmxpreprocess/toputil.c +++ b/src/gromacs/gmxpreprocess/toputil.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/vsite_parm.c b/src/gromacs/gmxpreprocess/vsite_parm.c index 678b3b0876..3a961a47d9 100644 --- a/src/gromacs/gmxpreprocess/vsite_parm.c +++ b/src/gromacs/gmxpreprocess/vsite_parm.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/gmxpreprocess/vsite_parm.h b/src/gromacs/gmxpreprocess/vsite_parm.h index 6a816a59ea..ebf93fae76 100644 --- a/src/gromacs/gmxpreprocess/vsite_parm.h +++ b/src/gromacs/gmxpreprocess/vsite_parm.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _vsite_parm_h diff --git a/src/gromacs/legacyheaders/3dview.h b/src/gromacs/legacyheaders/3dview.h index a08eed76c1..548791dce0 100644 --- a/src/gromacs/legacyheaders/3dview.h +++ b/src/gromacs/legacyheaders/3dview.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _3dview_h diff --git a/src/gromacs/legacyheaders/atomprop.h b/src/gromacs/legacyheaders/atomprop.h index 58ffe79f11..c70f760ec5 100644 --- a/src/gromacs/legacyheaders/atomprop.h +++ b/src/gromacs/legacyheaders/atomprop.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _atomprop_h diff --git a/src/gromacs/legacyheaders/bondf.h b/src/gromacs/legacyheaders/bondf.h index 4b9a0b87cf..e10df8c244 100644 --- a/src/gromacs/legacyheaders/bondf.h +++ b/src/gromacs/legacyheaders/bondf.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _bondf_h diff --git a/src/gromacs/legacyheaders/calcgrid.h b/src/gromacs/legacyheaders/calcgrid.h index e2b5166c19..91ecbe659c 100644 --- a/src/gromacs/legacyheaders/calcgrid.h +++ b/src/gromacs/legacyheaders/calcgrid.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "typedefs.h" diff --git a/src/gromacs/legacyheaders/calch.h b/src/gromacs/legacyheaders/calch.h index 7923aba0ce..7b1fc76d5e 100644 --- a/src/gromacs/legacyheaders/calch.h +++ b/src/gromacs/legacyheaders/calch.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _calch_h diff --git a/src/gromacs/legacyheaders/calcmu.h b/src/gromacs/legacyheaders/calcmu.h index 7870cd8c54..40f73b0b6b 100644 --- a/src/gromacs/legacyheaders/calcmu.h +++ b/src/gromacs/legacyheaders/calcmu.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _calcmu_h diff --git a/src/gromacs/legacyheaders/chargegroup.h b/src/gromacs/legacyheaders/chargegroup.h index 115d48c159..2fab5bc79c 100644 --- a/src/gromacs/legacyheaders/chargegroup.h +++ b/src/gromacs/legacyheaders/chargegroup.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _chargegroup_h diff --git a/src/gromacs/legacyheaders/checkpoint.h b/src/gromacs/legacyheaders/checkpoint.h index 18c3670021..a5e78391e0 100644 --- a/src/gromacs/legacyheaders/checkpoint.h +++ b/src/gromacs/legacyheaders/checkpoint.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _checkpoint_h diff --git a/src/gromacs/legacyheaders/constr.h b/src/gromacs/legacyheaders/constr.h index 7c456db692..89ae893c43 100644 --- a/src/gromacs/legacyheaders/constr.h +++ b/src/gromacs/legacyheaders/constr.h @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- - * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations +/* + * This file is part of the GROMACS molecular simulation package. * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _constr_h diff --git a/src/gromacs/legacyheaders/copyrite.h b/src/gromacs/legacyheaders/copyrite.h index b6ecbc4fd9..854e8cdfb5 100644 --- a/src/gromacs/legacyheaders/copyrite.h +++ b/src/gromacs/legacyheaders/copyrite.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _copyrite_h #define _copyrite_h diff --git a/src/gromacs/legacyheaders/disre.h b/src/gromacs/legacyheaders/disre.h index 08924f9265..c4664bee3f 100644 --- a/src/gromacs/legacyheaders/disre.h +++ b/src/gromacs/legacyheaders/disre.h @@ -1,37 +1,38 @@ - /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _disre_h diff --git a/src/gromacs/legacyheaders/do_fit.h b/src/gromacs/legacyheaders/do_fit.h index b00968f6e4..da9beab254 100644 --- a/src/gromacs/legacyheaders/do_fit.h +++ b/src/gromacs/legacyheaders/do_fit.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _do_fit_h diff --git a/src/gromacs/legacyheaders/ebin.h b/src/gromacs/legacyheaders/ebin.h index d3fe4d32e6..b468a3bc6b 100644 --- a/src/gromacs/legacyheaders/ebin.h +++ b/src/gromacs/legacyheaders/ebin.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _ebin_h diff --git a/src/gromacs/legacyheaders/edsam.h b/src/gromacs/legacyheaders/edsam.h index 497488c6cb..f4bd76dacd 100644 --- a/src/gromacs/legacyheaders/edsam.h +++ b/src/gromacs/legacyheaders/edsam.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _edsam_h diff --git a/src/gromacs/legacyheaders/force.h b/src/gromacs/legacyheaders/force.h index f7bb5c2e86..ac0b770b9b 100644 --- a/src/gromacs/legacyheaders/force.h +++ b/src/gromacs/legacyheaders/force.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _force_h diff --git a/src/gromacs/legacyheaders/gbutil.h b/src/gromacs/legacyheaders/gbutil.h index 39d1f67260..676df1a4fd 100644 --- a/src/gromacs/legacyheaders/gbutil.h +++ b/src/gromacs/legacyheaders/gbutil.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "typedefs.h" diff --git a/src/gromacs/legacyheaders/gen_ad.h b/src/gromacs/legacyheaders/gen_ad.h index c20ab9ba08..a9bf24d309 100644 --- a/src/gromacs/legacyheaders/gen_ad.h +++ b/src/gromacs/legacyheaders/gen_ad.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gen_ad_h diff --git a/src/gromacs/legacyheaders/genborn.h b/src/gromacs/legacyheaders/genborn.h index 322666a40d..78f544470e 100644 --- a/src/gromacs/legacyheaders/genborn.h +++ b/src/gromacs/legacyheaders/genborn.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ diff --git a/src/gromacs/legacyheaders/gmx_fatal.h b/src/gromacs/legacyheaders/gmx_fatal.h index d1b15fad10..fe206048bc 100644 --- a/src/gromacs/legacyheaders/gmx_fatal.h +++ b/src/gromacs/legacyheaders/gmx_fatal.h @@ -1,37 +1,38 @@ - /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _fatal_h diff --git a/src/gromacs/legacyheaders/gmx_fatal_collective.h b/src/gromacs/legacyheaders/gmx_fatal_collective.h index 66fc356a1b..af5599698b 100644 --- a/src/gromacs/legacyheaders/gmx_fatal_collective.h +++ b/src/gromacs/legacyheaders/gmx_fatal_collective.h @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2012, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2012, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _fatal_collective_h diff --git a/src/gromacs/legacyheaders/gmx_ga2la.h b/src/gromacs/legacyheaders/gmx_ga2la.h index ffe4af293b..cc816208dc 100644 --- a/src/gromacs/legacyheaders/gmx_ga2la.h +++ b/src/gromacs/legacyheaders/gmx_ga2la.h @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gmx_ga2la_h #define _gmx_ga2la_h diff --git a/src/gromacs/legacyheaders/gmx_random.h b/src/gromacs/legacyheaders/gmx_random.h index 967f89c1e9..8bfbf8b766 100644 --- a/src/gromacs/legacyheaders/gmx_random.h +++ b/src/gromacs/legacyheaders/gmx_random.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _GMX_RANDOM_H_ diff --git a/src/gromacs/legacyheaders/gmx_statistics.h b/src/gromacs/legacyheaders/gmx_statistics.h index 997578724a..22379369c8 100644 --- a/src/gromacs/legacyheaders/gmx_statistics.h +++ b/src/gromacs/legacyheaders/gmx_statistics.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _GMX_STATS_H diff --git a/src/gromacs/legacyheaders/gmxcomplex.h b/src/gromacs/legacyheaders/gmxcomplex.h index 92e9c22ae1..8380c3d6df 100644 --- a/src/gromacs/legacyheaders/gmxcomplex.h +++ b/src/gromacs/legacyheaders/gmxcomplex.h @@ -1,37 +1,38 @@ /* - * $Id: gmxcomplex.h,v 1.5 2009/03/07 13:30:36 lindahl Exp $ + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gmxcomplex_h #define _gmxcomplex_h diff --git a/src/gromacs/legacyheaders/gmxcpp.h b/src/gromacs/legacyheaders/gmxcpp.h index 88d4dd61fd..b42a80db98 100644 --- a/src/gromacs/legacyheaders/gmxcpp.h +++ b/src/gromacs/legacyheaders/gmxcpp.h @@ -1,36 +1,38 @@ - /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gmxcpp_h diff --git a/src/gromacs/legacyheaders/gpp_atomtype.h b/src/gromacs/legacyheaders/gpp_atomtype.h index b55569edc2..83fda2608f 100644 --- a/src/gromacs/legacyheaders/gpp_atomtype.h +++ b/src/gromacs/legacyheaders/gpp_atomtype.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gpp_atomtype_h diff --git a/src/gromacs/legacyheaders/gpp_nextnb.h b/src/gromacs/legacyheaders/gpp_nextnb.h index c5d1fe83cc..a01b7355a4 100644 --- a/src/gromacs/legacyheaders/gpp_nextnb.h +++ b/src/gromacs/legacyheaders/gpp_nextnb.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gpp_nextnb_h diff --git a/src/gromacs/legacyheaders/grompp.h b/src/gromacs/legacyheaders/grompp.h index 63f7c93ce8..1e2d6ca82e 100644 --- a/src/gromacs/legacyheaders/grompp.h +++ b/src/gromacs/legacyheaders/grompp.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _grompp_h diff --git a/src/gromacs/legacyheaders/gstat.h b/src/gromacs/legacyheaders/gstat.h index 6109c9ddfa..2306e81679 100644 --- a/src/gromacs/legacyheaders/gstat.h +++ b/src/gromacs/legacyheaders/gstat.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _gstat_h diff --git a/src/gromacs/legacyheaders/hackblock.h b/src/gromacs/legacyheaders/hackblock.h index 8a5a1532c3..bc763b6d73 100644 --- a/src/gromacs/legacyheaders/hackblock.h +++ b/src/gromacs/legacyheaders/hackblock.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _hackblock_h diff --git a/src/gromacs/legacyheaders/index.h b/src/gromacs/legacyheaders/index.h index d9d6d3a0fa..b229341bee 100644 --- a/src/gromacs/legacyheaders/index.h +++ b/src/gromacs/legacyheaders/index.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _index_h diff --git a/src/gromacs/legacyheaders/invblock.h b/src/gromacs/legacyheaders/invblock.h index 11cbc05f7c..68379dc5ad 100644 --- a/src/gromacs/legacyheaders/invblock.h +++ b/src/gromacs/legacyheaders/invblock.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _invblock_h diff --git a/src/gromacs/legacyheaders/macros.h b/src/gromacs/legacyheaders/macros.h index 261c86f6eb..0d02e7f53b 100644 --- a/src/gromacs/legacyheaders/macros.h +++ b/src/gromacs/legacyheaders/macros.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _macros_h diff --git a/src/gromacs/legacyheaders/main.h b/src/gromacs/legacyheaders/main.h index 0c23dd4a52..3089e00237 100644 --- a/src/gromacs/legacyheaders/main.h +++ b/src/gromacs/legacyheaders/main.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _main_h diff --git a/src/gromacs/legacyheaders/maths.h b/src/gromacs/legacyheaders/maths.h index d39810c2f8..998a1ed66b 100644 --- a/src/gromacs/legacyheaders/maths.h +++ b/src/gromacs/legacyheaders/maths.h @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _maths_h diff --git a/src/gromacs/legacyheaders/md_logging.h b/src/gromacs/legacyheaders/md_logging.h index bb6da91e91..700a97f0ad 100644 --- a/src/gromacs/legacyheaders/md_logging.h +++ b/src/gromacs/legacyheaders/md_logging.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _md_logging_h diff --git a/src/gromacs/legacyheaders/md_support.h b/src/gromacs/legacyheaders/md_support.h index ad0389d51f..3561cce533 100644 --- a/src/gromacs/legacyheaders/md_support.h +++ b/src/gromacs/legacyheaders/md_support.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _md_support_h diff --git a/src/gromacs/legacyheaders/mdatoms.h b/src/gromacs/legacyheaders/mdatoms.h index 6750d4e470..47096dc794 100644 --- a/src/gromacs/legacyheaders/mdatoms.h +++ b/src/gromacs/legacyheaders/mdatoms.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _mdatoms_h diff --git a/src/gromacs/legacyheaders/mdebin.h b/src/gromacs/legacyheaders/mdebin.h index 8bb1146626..4516a07367 100644 --- a/src/gromacs/legacyheaders/mdebin.h +++ b/src/gromacs/legacyheaders/mdebin.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _mdebin_h diff --git a/src/gromacs/legacyheaders/mdrun.h b/src/gromacs/legacyheaders/mdrun.h index 9713feb0c0..40c108cc67 100644 --- a/src/gromacs/legacyheaders/mdrun.h +++ b/src/gromacs/legacyheaders/mdrun.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _mdrun_h diff --git a/src/gromacs/legacyheaders/mshift.h b/src/gromacs/legacyheaders/mshift.h index 91cb80dcfd..d4b5c9fa3d 100644 --- a/src/gromacs/legacyheaders/mshift.h +++ b/src/gromacs/legacyheaders/mshift.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _mshift_h diff --git a/src/gromacs/legacyheaders/mtop_util.h b/src/gromacs/legacyheaders/mtop_util.h index bf71d2165b..7c5172c75e 100644 --- a/src/gromacs/legacyheaders/mtop_util.h +++ b/src/gromacs/legacyheaders/mtop_util.h @@ -3,7 +3,7 @@ * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team. - * Copyright (c) 2013, by the GROMACS development team, led by + * Copyright (c) 2012,2013, by the GROMACS development team, led by * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, * and including many others, as listed in the AUTHORS file in the * top-level source directory and at http://www.gromacs.org. diff --git a/src/gromacs/legacyheaders/mvdata.h b/src/gromacs/legacyheaders/mvdata.h index 5ca442c997..7b15b1c289 100644 --- a/src/gromacs/legacyheaders/mvdata.h +++ b/src/gromacs/legacyheaders/mvdata.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _mvdata_h diff --git a/src/gromacs/legacyheaders/network.h b/src/gromacs/legacyheaders/network.h index d0654a96d6..4c4d86f2d7 100644 --- a/src/gromacs/legacyheaders/network.h +++ b/src/gromacs/legacyheaders/network.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _network_h diff --git a/src/gromacs/legacyheaders/nonbonded.h b/src/gromacs/legacyheaders/nonbonded.h index b0f4ada51b..d92cfd0064 100644 --- a/src/gromacs/legacyheaders/nonbonded.h +++ b/src/gromacs/legacyheaders/nonbonded.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nonbonded_h diff --git a/src/gromacs/legacyheaders/nrama.h b/src/gromacs/legacyheaders/nrama.h index 1cc9e6be51..d75f98aca4 100644 --- a/src/gromacs/legacyheaders/nrama.h +++ b/src/gromacs/legacyheaders/nrama.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nrama_h diff --git a/src/gromacs/legacyheaders/nrjac.h b/src/gromacs/legacyheaders/nrjac.h index d10cbbdbef..f759e61aec 100644 --- a/src/gromacs/legacyheaders/nrjac.h +++ b/src/gromacs/legacyheaders/nrjac.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nrjac_h diff --git a/src/gromacs/legacyheaders/nrnb.h b/src/gromacs/legacyheaders/nrnb.h index d0d66cfafe..642daa26b7 100644 --- a/src/gromacs/legacyheaders/nrnb.h +++ b/src/gromacs/legacyheaders/nrnb.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nrnb_h diff --git a/src/gromacs/legacyheaders/ns.h b/src/gromacs/legacyheaders/ns.h index 3911fef27e..7c65628aa3 100644 --- a/src/gromacs/legacyheaders/ns.h +++ b/src/gromacs/legacyheaders/ns.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _ns_h diff --git a/src/gromacs/legacyheaders/nsgrid.h b/src/gromacs/legacyheaders/nsgrid.h index e982606277..ee068d9fa3 100644 --- a/src/gromacs/legacyheaders/nsgrid.h +++ b/src/gromacs/legacyheaders/nsgrid.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "typedefs.h" diff --git a/src/gromacs/legacyheaders/oenv.h b/src/gromacs/legacyheaders/oenv.h index 6ea8d2eef2..11c4fe2ba3 100644 --- a/src/gromacs/legacyheaders/oenv.h +++ b/src/gromacs/legacyheaders/oenv.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _oenv_h diff --git a/src/gromacs/legacyheaders/orires.h b/src/gromacs/legacyheaders/orires.h index 644478df30..58fc412c41 100644 --- a/src/gromacs/legacyheaders/orires.h +++ b/src/gromacs/legacyheaders/orires.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _orires_h diff --git a/src/gromacs/legacyheaders/partdec.h b/src/gromacs/legacyheaders/partdec.h index f9823b12ca..a7656c6ba5 100644 --- a/src/gromacs/legacyheaders/partdec.h +++ b/src/gromacs/legacyheaders/partdec.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _partdec_h diff --git a/src/gromacs/legacyheaders/pbc.h b/src/gromacs/legacyheaders/pbc.h index 433e9e9aad..6efaf9adc1 100644 --- a/src/gromacs/legacyheaders/pbc.h +++ b/src/gromacs/legacyheaders/pbc.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _types_pbc_h diff --git a/src/gromacs/legacyheaders/pdb2top.h b/src/gromacs/legacyheaders/pdb2top.h index 5947db7441..6b57be2523 100644 --- a/src/gromacs/legacyheaders/pdb2top.h +++ b/src/gromacs/legacyheaders/pdb2top.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _pdb2top_h diff --git a/src/gromacs/legacyheaders/perf_est.h b/src/gromacs/legacyheaders/perf_est.h index 82f4e72607..35d1ca3c7b 100644 --- a/src/gromacs/legacyheaders/perf_est.h +++ b/src/gromacs/legacyheaders/perf_est.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _perf_est_h #define _perf_est_h diff --git a/src/gromacs/legacyheaders/physics.h b/src/gromacs/legacyheaders/physics.h index c77dd5c704..b4a99abe2b 100644 --- a/src/gromacs/legacyheaders/physics.h +++ b/src/gromacs/legacyheaders/physics.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _physics_h diff --git a/src/gromacs/legacyheaders/princ.h b/src/gromacs/legacyheaders/princ.h index 6369d13ea6..78c639a30f 100644 --- a/src/gromacs/legacyheaders/princ.h +++ b/src/gromacs/legacyheaders/princ.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _princ_h diff --git a/src/gromacs/legacyheaders/pull.h b/src/gromacs/legacyheaders/pull.h index 8b9df4707b..7492d923d6 100644 --- a/src/gromacs/legacyheaders/pull.h +++ b/src/gromacs/legacyheaders/pull.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _pull_h diff --git a/src/gromacs/legacyheaders/pull_rotation.h b/src/gromacs/legacyheaders/pull_rotation.h index d3ff050ff7..492e527687 100644 --- a/src/gromacs/legacyheaders/pull_rotation.h +++ b/src/gromacs/legacyheaders/pull_rotation.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /*! \file pull_rotation.h diff --git a/src/gromacs/legacyheaders/qmmm.h b/src/gromacs/legacyheaders/qmmm.h index ab70f41222..bc31efd1b1 100644 --- a/src/gromacs/legacyheaders/qmmm.h +++ b/src/gromacs/legacyheaders/qmmm.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _QMMM_h diff --git a/src/gromacs/legacyheaders/random.h b/src/gromacs/legacyheaders/random.h index df1706ec67..7ebe45a402 100644 --- a/src/gromacs/legacyheaders/random.h +++ b/src/gromacs/legacyheaders/random.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _random_h diff --git a/src/gromacs/legacyheaders/rbin.h b/src/gromacs/legacyheaders/rbin.h index a7c1b7cb23..72f5b4ce1c 100644 --- a/src/gromacs/legacyheaders/rbin.h +++ b/src/gromacs/legacyheaders/rbin.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _rbin_h diff --git a/src/gromacs/legacyheaders/readinp.h b/src/gromacs/legacyheaders/readinp.h index 053c9ad063..538da4e2f7 100644 --- a/src/gromacs/legacyheaders/readinp.h +++ b/src/gromacs/legacyheaders/readinp.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _readinp_h diff --git a/src/gromacs/legacyheaders/resall.h b/src/gromacs/legacyheaders/resall.h index 05d9ad349e..6e85d8da97 100644 --- a/src/gromacs/legacyheaders/resall.h +++ b/src/gromacs/legacyheaders/resall.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _resall_h diff --git a/src/gromacs/legacyheaders/rmpbc.h b/src/gromacs/legacyheaders/rmpbc.h index 523e10edc8..0b9c21a04a 100644 --- a/src/gromacs/legacyheaders/rmpbc.h +++ b/src/gromacs/legacyheaders/rmpbc.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _rmpbc_h diff --git a/src/gromacs/legacyheaders/sfactor.h b/src/gromacs/legacyheaders/sfactor.h index 0a99bc7320..fb81e52df4 100644 --- a/src/gromacs/legacyheaders/sfactor.h +++ b/src/gromacs/legacyheaders/sfactor.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _sfactor_h diff --git a/src/gromacs/legacyheaders/shellfc.h b/src/gromacs/legacyheaders/shellfc.h index 0298dd608d..96dcaec0cf 100644 --- a/src/gromacs/legacyheaders/shellfc.h +++ b/src/gromacs/legacyheaders/shellfc.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "typedefs.h" diff --git a/src/gromacs/legacyheaders/shift.h b/src/gromacs/legacyheaders/shift.h index 764f4bcd29..08488454e8 100644 --- a/src/gromacs/legacyheaders/shift.h +++ b/src/gromacs/legacyheaders/shift.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _shift_h diff --git a/src/gromacs/legacyheaders/sighandler.h b/src/gromacs/legacyheaders/sighandler.h index 18b13d3801..03a6f6e9da 100644 --- a/src/gromacs/legacyheaders/sighandler.h +++ b/src/gromacs/legacyheaders/sighandler.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _sighandler_h diff --git a/src/gromacs/legacyheaders/sim_util.h b/src/gromacs/legacyheaders/sim_util.h index adb59d75c0..8cda529c12 100644 --- a/src/gromacs/legacyheaders/sim_util.h +++ b/src/gromacs/legacyheaders/sim_util.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _sim_util_h diff --git a/src/gromacs/legacyheaders/smalloc.h b/src/gromacs/legacyheaders/smalloc.h index 72869c3878..23878641b8 100644 --- a/src/gromacs/legacyheaders/smalloc.h +++ b/src/gromacs/legacyheaders/smalloc.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _smalloc_h diff --git a/src/gromacs/legacyheaders/sortwater.h b/src/gromacs/legacyheaders/sortwater.h index d64d386211..6cdf8be65e 100644 --- a/src/gromacs/legacyheaders/sortwater.h +++ b/src/gromacs/legacyheaders/sortwater.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _sortwater_h diff --git a/src/gromacs/legacyheaders/split.h b/src/gromacs/legacyheaders/split.h index 62f670d335..d069967ba9 100644 --- a/src/gromacs/legacyheaders/split.h +++ b/src/gromacs/legacyheaders/split.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _split_h diff --git a/src/gromacs/legacyheaders/splitter.h b/src/gromacs/legacyheaders/splitter.h index 87190fcf28..a3975555d6 100644 --- a/src/gromacs/legacyheaders/splitter.h +++ b/src/gromacs/legacyheaders/splitter.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _splitter_h diff --git a/src/gromacs/legacyheaders/strdb.h b/src/gromacs/legacyheaders/strdb.h index 9f8ce00440..a5978d8187 100644 --- a/src/gromacs/legacyheaders/strdb.h +++ b/src/gromacs/legacyheaders/strdb.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _strdb_h diff --git a/src/gromacs/legacyheaders/symtab.h b/src/gromacs/legacyheaders/symtab.h index 4739ccb1b2..d0561340c2 100644 --- a/src/gromacs/legacyheaders/symtab.h +++ b/src/gromacs/legacyheaders/symtab.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _symtab_h diff --git a/src/gromacs/legacyheaders/sysstuff.h b/src/gromacs/legacyheaders/sysstuff.h index ec5c177f00..7eeb69738c 100644 --- a/src/gromacs/legacyheaders/sysstuff.h +++ b/src/gromacs/legacyheaders/sysstuff.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _sysstuff_h diff --git a/src/gromacs/legacyheaders/tgroup.h b/src/gromacs/legacyheaders/tgroup.h index 41d4380358..f106f92fd6 100644 --- a/src/gromacs/legacyheaders/tgroup.h +++ b/src/gromacs/legacyheaders/tgroup.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _tgroup_h diff --git a/src/gromacs/legacyheaders/toputil.h b/src/gromacs/legacyheaders/toputil.h index 1f2cb0ec45..91d7baf693 100644 --- a/src/gromacs/legacyheaders/toputil.h +++ b/src/gromacs/legacyheaders/toputil.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _toputil_h diff --git a/src/gromacs/legacyheaders/txtdump.h b/src/gromacs/legacyheaders/txtdump.h index 01aa9273a9..6ac929f254 100644 --- a/src/gromacs/legacyheaders/txtdump.h +++ b/src/gromacs/legacyheaders/txtdump.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _txtdump_h diff --git a/src/gromacs/legacyheaders/typedefs.h b/src/gromacs/legacyheaders/typedefs.h index 6d45e44bde..cc952bbbd9 100644 --- a/src/gromacs/legacyheaders/typedefs.h +++ b/src/gromacs/legacyheaders/typedefs.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _typedefs_h diff --git a/src/gromacs/legacyheaders/types/atoms.h b/src/gromacs/legacyheaders/types/atoms.h index f05a9b34ce..790520803e 100644 --- a/src/gromacs/legacyheaders/types/atoms.h +++ b/src/gromacs/legacyheaders/types/atoms.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _atoms_h #define _atoms_h diff --git a/src/gromacs/legacyheaders/types/block.h b/src/gromacs/legacyheaders/types/block.h index d57e1aca30..0a753e2d84 100644 --- a/src/gromacs/legacyheaders/types/block.h +++ b/src/gromacs/legacyheaders/types/block.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _block_h #define _block_h diff --git a/src/gromacs/legacyheaders/types/constr.h b/src/gromacs/legacyheaders/types/constr.h index 8adf9a8106..100bf289d5 100644 --- a/src/gromacs/legacyheaders/types/constr.h +++ b/src/gromacs/legacyheaders/types/constr.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _types_constr_h diff --git a/src/gromacs/legacyheaders/types/energy.h b/src/gromacs/legacyheaders/types/energy.h index 494fbe9a35..8fce52bb48 100644 --- a/src/gromacs/legacyheaders/types/energy.h +++ b/src/gromacs/legacyheaders/types/energy.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "simple.h" diff --git a/src/gromacs/legacyheaders/types/fcdata.h b/src/gromacs/legacyheaders/types/fcdata.h index 99a6aa9185..2c9d605e27 100644 --- a/src/gromacs/legacyheaders/types/fcdata.h +++ b/src/gromacs/legacyheaders/types/fcdata.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _fcdata_h #define _fcdata_h diff --git a/src/gromacs/legacyheaders/types/force_flags.h b/src/gromacs/legacyheaders/types/force_flags.h index 9db5d6e77a..51c9382fa5 100644 --- a/src/gromacs/legacyheaders/types/force_flags.h +++ b/src/gromacs/legacyheaders/types/force_flags.h @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2012, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2012, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _force_flags_h diff --git a/src/gromacs/legacyheaders/types/genborn.h b/src/gromacs/legacyheaders/types/genborn.h index 7838526d01..6edf3d75e8 100644 --- a/src/gromacs/legacyheaders/types/genborn.h +++ b/src/gromacs/legacyheaders/types/genborn.h @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ diff --git a/src/gromacs/legacyheaders/types/globsig.h b/src/gromacs/legacyheaders/types/globsig.h index 0ce6e140c3..37ede04753 100644 --- a/src/gromacs/legacyheaders/types/globsig.h +++ b/src/gromacs/legacyheaders/types/globsig.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _globsig_h #define _globsig_h diff --git a/src/gromacs/legacyheaders/types/graph.h b/src/gromacs/legacyheaders/types/graph.h index c4c915e7ad..67cc57a5d6 100644 --- a/src/gromacs/legacyheaders/types/graph.h +++ b/src/gromacs/legacyheaders/types/graph.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _types_graph_h diff --git a/src/gromacs/legacyheaders/types/group.h b/src/gromacs/legacyheaders/types/group.h index cd0713c952..89decf94a2 100644 --- a/src/gromacs/legacyheaders/types/group.h +++ b/src/gromacs/legacyheaders/types/group.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ diff --git a/src/gromacs/legacyheaders/types/ifunc.h b/src/gromacs/legacyheaders/types/ifunc.h index 4d851954a0..7e3cc7cad0 100644 --- a/src/gromacs/legacyheaders/types/ifunc.h +++ b/src/gromacs/legacyheaders/types/ifunc.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ diff --git a/src/gromacs/legacyheaders/types/ishift.h b/src/gromacs/legacyheaders/types/ishift.h index 0c8e061a13..4c44dfe92e 100644 --- a/src/gromacs/legacyheaders/types/ishift.h +++ b/src/gromacs/legacyheaders/types/ishift.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ diff --git a/src/gromacs/legacyheaders/types/iteratedconstraints.h b/src/gromacs/legacyheaders/types/iteratedconstraints.h index 37a63846e6..2f155ad5c0 100644 --- a/src/gromacs/legacyheaders/types/iteratedconstraints.h +++ b/src/gromacs/legacyheaders/types/iteratedconstraints.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _iteratedconstraints_h #define _iteratedconstraints_h diff --git a/src/gromacs/legacyheaders/types/matrix.h b/src/gromacs/legacyheaders/types/matrix.h index b4f827ed01..3958b8b72a 100644 --- a/src/gromacs/legacyheaders/types/matrix.h +++ b/src/gromacs/legacyheaders/types/matrix.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef __cplusplus diff --git a/src/gromacs/legacyheaders/types/mdatom.h b/src/gromacs/legacyheaders/types/mdatom.h index 70317718c2..a7710513dc 100644 --- a/src/gromacs/legacyheaders/types/mdatom.h +++ b/src/gromacs/legacyheaders/types/mdatom.h @@ -3,7 +3,7 @@ * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team. - * Copyright (c) 2013, by the GROMACS development team, led by + * Copyright (c) 2012,2013, by the GROMACS development team, led by * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, * and including many others, as listed in the AUTHORS file in the * top-level source directory and at http://www.gromacs.org. diff --git a/src/gromacs/legacyheaders/types/nblist.h b/src/gromacs/legacyheaders/types/nblist.h index 33888cc203..540ab77a16 100644 --- a/src/gromacs/legacyheaders/types/nblist.h +++ b/src/gromacs/legacyheaders/types/nblist.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nblist_h #define _nblist_h diff --git a/src/gromacs/legacyheaders/types/nlistheuristics.h b/src/gromacs/legacyheaders/types/nlistheuristics.h index 07fcd641e2..d56f008c4b 100644 --- a/src/gromacs/legacyheaders/types/nlistheuristics.h +++ b/src/gromacs/legacyheaders/types/nlistheuristics.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nlistheuristics_h #define _nlistheuristics_h diff --git a/src/gromacs/legacyheaders/types/nrnb.h b/src/gromacs/legacyheaders/types/nrnb.h index 945d4a3b0e..573bbf12d7 100644 --- a/src/gromacs/legacyheaders/types/nrnb.h +++ b/src/gromacs/legacyheaders/types/nrnb.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _types_nrnb_h #define _types_nrnb_h diff --git a/src/gromacs/legacyheaders/types/ns.h b/src/gromacs/legacyheaders/types/ns.h index 014e722707..0a01994a21 100644 --- a/src/gromacs/legacyheaders/types/ns.h +++ b/src/gromacs/legacyheaders/types/ns.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "nsgrid.h" diff --git a/src/gromacs/legacyheaders/types/nsgrid.h b/src/gromacs/legacyheaders/types/nsgrid.h index 3caa870ddd..9bcf048eab 100644 --- a/src/gromacs/legacyheaders/types/nsgrid.h +++ b/src/gromacs/legacyheaders/types/nsgrid.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _nsgrid_h #define _nsgrid_h diff --git a/src/gromacs/legacyheaders/types/oenv.h b/src/gromacs/legacyheaders/types/oenv.h index 6910609cf2..b5df9a968b 100644 --- a/src/gromacs/legacyheaders/types/oenv.h +++ b/src/gromacs/legacyheaders/types/oenv.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef GMX_TYPES_OENV_H #define GMX_TYPES_OENV_H diff --git a/src/gromacs/legacyheaders/types/pbc.h b/src/gromacs/legacyheaders/types/pbc.h index 0276f0d5e3..29419e7523 100644 --- a/src/gromacs/legacyheaders/types/pbc.h +++ b/src/gromacs/legacyheaders/types/pbc.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _pbc_h #define _pbc_h diff --git a/src/gromacs/legacyheaders/types/qmmmrec.h b/src/gromacs/legacyheaders/types/qmmmrec.h index d81910c07b..ac8d18536d 100644 --- a/src/gromacs/legacyheaders/types/qmmmrec.h +++ b/src/gromacs/legacyheaders/types/qmmmrec.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ diff --git a/src/gromacs/legacyheaders/types/shellfc.h b/src/gromacs/legacyheaders/types/shellfc.h index dd3e1c770e..e1423c2496 100644 --- a/src/gromacs/legacyheaders/types/shellfc.h +++ b/src/gromacs/legacyheaders/types/shellfc.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ diff --git a/src/gromacs/legacyheaders/types/simple.h b/src/gromacs/legacyheaders/types/simple.h index 55d77aff5d..f2f90a3866 100644 --- a/src/gromacs/legacyheaders/types/simple.h +++ b/src/gromacs/legacyheaders/types/simple.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _simple_h diff --git a/src/gromacs/legacyheaders/types/state.h b/src/gromacs/legacyheaders/types/state.h index 2d434e71cb..961c543f6f 100644 --- a/src/gromacs/legacyheaders/types/state.h +++ b/src/gromacs/legacyheaders/types/state.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _state_h_ #define _state_h_ diff --git a/src/gromacs/legacyheaders/types/symtab.h b/src/gromacs/legacyheaders/types/symtab.h index b75a4eb5d0..19d4d04fd0 100644 --- a/src/gromacs/legacyheaders/types/symtab.h +++ b/src/gromacs/legacyheaders/types/symtab.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _types_symtab_h #define _types_symtab_h diff --git a/src/gromacs/legacyheaders/types/topology.h b/src/gromacs/legacyheaders/types/topology.h index 53afb1c726..6f3657228e 100644 --- a/src/gromacs/legacyheaders/types/topology.h +++ b/src/gromacs/legacyheaders/types/topology.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2011, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GRoups of Organic Molecules in ACtion for Science + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include "atoms.h" diff --git a/src/gromacs/legacyheaders/update.h b/src/gromacs/legacyheaders/update.h index 02136afd12..8591327ccc 100644 --- a/src/gromacs/legacyheaders/update.h +++ b/src/gromacs/legacyheaders/update.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _update_h diff --git a/src/gromacs/legacyheaders/vcm.h b/src/gromacs/legacyheaders/vcm.h index d65df55296..affebb924f 100644 --- a/src/gromacs/legacyheaders/vcm.h +++ b/src/gromacs/legacyheaders/vcm.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _vcm_h diff --git a/src/gromacs/legacyheaders/vec.h b/src/gromacs/legacyheaders/vec.h index 5951209f3a..4f7a790504 100644 --- a/src/gromacs/legacyheaders/vec.h +++ b/src/gromacs/legacyheaders/vec.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _vec_h #define _vec_h diff --git a/src/gromacs/legacyheaders/viewit.h b/src/gromacs/legacyheaders/viewit.h index 507c33138c..0a6c75f155 100644 --- a/src/gromacs/legacyheaders/viewit.h +++ b/src/gromacs/legacyheaders/viewit.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _viewit_h diff --git a/src/gromacs/legacyheaders/vsite.h b/src/gromacs/legacyheaders/vsite.h index fb172315db..c143456a3c 100644 --- a/src/gromacs/legacyheaders/vsite.h +++ b/src/gromacs/legacyheaders/vsite.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _vsite_h diff --git a/src/gromacs/legacyheaders/warninp.h b/src/gromacs/legacyheaders/warninp.h index bdce25dec6..be7c8a71cf 100644 --- a/src/gromacs/legacyheaders/warninp.h +++ b/src/gromacs/legacyheaders/warninp.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _warninp_h diff --git a/src/gromacs/legacyheaders/writeps.h b/src/gromacs/legacyheaders/writeps.h index 8a1d1a0290..f6005730f8 100644 --- a/src/gromacs/legacyheaders/writeps.h +++ b/src/gromacs/legacyheaders/writeps.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _writeps_h diff --git a/src/gromacs/legacyheaders/xvgr.h b/src/gromacs/legacyheaders/xvgr.h index ac8775e5c5..22123bdd04 100644 --- a/src/gromacs/legacyheaders/xvgr.h +++ b/src/gromacs/legacyheaders/xvgr.h @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _xvgr_h diff --git a/src/gromacs/mdlib/calcmu.c b/src/gromacs/mdlib/calcmu.c index eee7d2d4b2..eec3eddf34 100644 --- a/src/gromacs/mdlib/calcmu.c +++ b/src/gromacs/mdlib/calcmu.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/calcvir.c b/src/gromacs/mdlib/calcvir.c index 8e56a702bf..395b9c38f5 100644 --- a/src/gromacs/mdlib/calcvir.c +++ b/src/gromacs/mdlib/calcvir.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/clincs.c b/src/gromacs/mdlib/clincs.c index 240c3d5f6e..e07ff313b1 100644 --- a/src/gromacs/mdlib/clincs.c +++ b/src/gromacs/mdlib/clincs.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/constr.c b/src/gromacs/mdlib/constr.c index af425d5e06..469ef5b968 100644 --- a/src/gromacs/mdlib/constr.c +++ b/src/gromacs/mdlib/constr.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/coupling.c b/src/gromacs/mdlib/coupling.c index 62c3b0bc88..3d1190e401 100644 --- a/src/gromacs/mdlib/coupling.c +++ b/src/gromacs/mdlib/coupling.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations +/* + * This file is part of the GROMACS molecular simulation package. * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/csettle.c b/src/gromacs/mdlib/csettle.c index 0af84f851b..5f89dbdb7a 100644 --- a/src/gromacs/mdlib/csettle.c +++ b/src/gromacs/mdlib/csettle.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/ebin.c b/src/gromacs/mdlib/ebin.c index a29e9506d7..c903e9d3af 100644 --- a/src/gromacs/mdlib/ebin.c +++ b/src/gromacs/mdlib/ebin.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/edsam.c b/src/gromacs/mdlib/edsam.c index 737eecddd0..d85d598195 100644 --- a/src/gromacs/mdlib/edsam.c +++ b/src/gromacs/mdlib/edsam.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/ewald.c b/src/gromacs/mdlib/ewald.c index 5df5ecaee9..0681b67516 100644 --- a/src/gromacs/mdlib/ewald.c +++ b/src/gromacs/mdlib/ewald.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/genborn.c b/src/gromacs/mdlib/genborn.c index 0454f30be2..ec8e6ec238 100644 --- a/src/gromacs/mdlib/genborn.c +++ b/src/gromacs/mdlib/genborn.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/genborn_allvsall.c b/src/gromacs/mdlib/genborn_allvsall.c index e6fb310d99..48a682f0f5 100644 --- a/src/gromacs/mdlib/genborn_allvsall.c +++ b/src/gromacs/mdlib/genborn_allvsall.c @@ -1,31 +1,38 @@ /* - * This source code is part of - * - * G R O M A C S + * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2009, The GROMACS Development Team + * Copyright (c) 2001-2009, The GROMACS Development Team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 + * of the License, or (at your option) any later version. * - * Gromacs is a library for molecular simulation and trajectory analysis, - * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for - * a full list of developers and information, check out http://www.gromacs.org + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * This program is free software; you can redistribute it and/or modify it under - * the terms of the GNU Lesser General Public License as published by the Free - * Software Foundation; either version 2 of the License, or (at your option) any - * later version. - * As a special exception, you may use this file as part of a free software - * library without restriction. Specifically, if other files instantiate - * templates or use macros or inline functions from this file, or you compile - * this file and link it with other files to produce an executable, this - * file does not by itself cause the resulting executable to be covered by - * the GNU Lesser General Public License. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * In plain-speak: do not worry about classes/macros/templates either - only - * changes to the library have to be LGPL, not an application linking with it. + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * To help fund GROMACS development, we humbly ask that you cite - * the papers people have written on it - you can find them on the website! + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/genborn_allvsall.h b/src/gromacs/mdlib/genborn_allvsall.h index f54ed55e0b..59d0723f9c 100644 --- a/src/gromacs/mdlib/genborn_allvsall.h +++ b/src/gromacs/mdlib/genborn_allvsall.h @@ -1,31 +1,38 @@ /* - * This source code is part of - * - * G R O M A C S + * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2009, The GROMACS Development Team + * Copyright (c) 2001-2009, The GROMACS Development Team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 + * of the License, or (at your option) any later version. * - * Gromacs is a library for molecular simulation and trajectory analysis, - * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for - * a full list of developers and information, check out http://www.gromacs.org + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * This program is free software; you can redistribute it and/or modify it under - * the terms of the GNU Lesser General Public License as published by the Free - * Software Foundation; either version 2 of the License, or (at your option) any - * later version. - * As a special exception, you may use this file as part of a free software - * library without restriction. Specifically, if other files instantiate - * templates or use macros or inline functions from this file, or you compile - * this file and link it with other files to produce an executable, this - * file does not by itself cause the resulting executable to be covered by - * the GNU Lesser General Public License. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * In plain-speak: do not worry about classes/macros/templates either - only - * changes to the library have to be LGPL, not an application linking with it. + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * To help fund GROMACS development, we humbly ask that you cite - * the papers people have written on it - you can find them on the website! + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _GENBORN_ALLVSALL_H #define _GENBORN_ALLVSALL_H diff --git a/src/gromacs/mdlib/genborn_allvsall_sse2_double.c b/src/gromacs/mdlib/genborn_allvsall_sse2_double.c index e795efa561..bcfea3c338 100644 --- a/src/gromacs/mdlib/genborn_allvsall_sse2_double.c +++ b/src/gromacs/mdlib/genborn_allvsall_sse2_double.c @@ -1,31 +1,38 @@ /* - * This source code is part of - * - * G R O M A C S + * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2009, The GROMACS Development Team + * Copyright (c) 2001-2009, The GROMACS Development Team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 + * of the License, or (at your option) any later version. * - * Gromacs is a library for molecular simulation and trajectory analysis, - * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for - * a full list of developers and information, check out http://www.gromacs.org + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * This program is free software; you can redistribute it and/or modify it under - * the terms of the GNU Lesser General Public License as published by the Free - * Software Foundation; either version 2 of the License, or (at your option) any - * later version. - * As a special exception, you may use this file as part of a free software - * library without restriction. Specifically, if other files instantiate - * templates or use macros or inline functions from this file, or you compile - * this file and link it with other files to produce an executable, this - * file does not by itself cause the resulting executable to be covered by - * the GNU Lesser General Public License. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * In plain-speak: do not worry about classes/macros/templates either - only - * changes to the library have to be LGPL, not an application linking with it. + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * To help fund GROMACS development, we humbly ask that you cite - * the papers people have written on it - you can find them on the website! + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/genborn_allvsall_sse2_double.h b/src/gromacs/mdlib/genborn_allvsall_sse2_double.h index bbb0bd5c0d..778a4df3d8 100644 --- a/src/gromacs/mdlib/genborn_allvsall_sse2_double.h +++ b/src/gromacs/mdlib/genborn_allvsall_sse2_double.h @@ -1,31 +1,38 @@ /* - * This source code is part of - * - * G R O M A C S + * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2009, The GROMACS Development Team + * Copyright (c) 2001-2009, The GROMACS Development Team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 + * of the License, or (at your option) any later version. * - * Gromacs is a library for molecular simulation and trajectory analysis, - * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for - * a full list of developers and information, check out http://www.gromacs.org + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * This program is free software; you can redistribute it and/or modify it under - * the terms of the GNU Lesser General Public License as published by the Free - * Software Foundation; either version 2 of the License, or (at your option) any - * later version. - * As a special exception, you may use this file as part of a free software - * library without restriction. Specifically, if other files instantiate - * templates or use macros or inline functions from this file, or you compile - * this file and link it with other files to produce an executable, this - * file does not by itself cause the resulting executable to be covered by - * the GNU Lesser General Public License. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * In plain-speak: do not worry about classes/macros/templates either - only - * changes to the library have to be LGPL, not an application linking with it. + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * To help fund GROMACS development, we humbly ask that you cite - * the papers people have written on it - you can find them on the website! + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _GENBORN_ALLVSALL_SSE2_DOUBLE_H #define _GENBORN_ALLVSALL_SSE2_DOUBLE_H diff --git a/src/gromacs/mdlib/genborn_allvsall_sse2_single.c b/src/gromacs/mdlib/genborn_allvsall_sse2_single.c index 5aaf704e2a..2a96cc1422 100644 --- a/src/gromacs/mdlib/genborn_allvsall_sse2_single.c +++ b/src/gromacs/mdlib/genborn_allvsall_sse2_single.c @@ -1,31 +1,38 @@ /* - * This source code is part of - * - * G R O M A C S + * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2009, The GROMACS Development Team + * Copyright (c) 2001-2009, The GROMACS Development Team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 + * of the License, or (at your option) any later version. * - * Gromacs is a library for molecular simulation and trajectory analysis, - * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for - * a full list of developers and information, check out http://www.gromacs.org + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * This program is free software; you can redistribute it and/or modify it under - * the terms of the GNU Lesser General Public License as published by the Free - * Software Foundation; either version 2 of the License, or (at your option) any - * later version. - * As a special exception, you may use this file as part of a free software - * library without restriction. Specifically, if other files instantiate - * templates or use macros or inline functions from this file, or you compile - * this file and link it with other files to produce an executable, this - * file does not by itself cause the resulting executable to be covered by - * the GNU Lesser General Public License. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * In plain-speak: do not worry about classes/macros/templates either - only - * changes to the library have to be LGPL, not an application linking with it. + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * To help fund GROMACS development, we humbly ask that you cite - * the papers people have written on it - you can find them on the website! + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/genborn_allvsall_sse2_single.h b/src/gromacs/mdlib/genborn_allvsall_sse2_single.h index eec4025027..2c56207b76 100644 --- a/src/gromacs/mdlib/genborn_allvsall_sse2_single.h +++ b/src/gromacs/mdlib/genborn_allvsall_sse2_single.h @@ -1,31 +1,38 @@ /* - * This source code is part of - * - * G R O M A C S + * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2009, The GROMACS Development Team + * Copyright (c) 2001-2009, The GROMACS Development Team. + * Copyright (c) 2010, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 + * of the License, or (at your option) any later version. * - * Gromacs is a library for molecular simulation and trajectory analysis, - * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for - * a full list of developers and information, check out http://www.gromacs.org + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * This program is free software; you can redistribute it and/or modify it under - * the terms of the GNU Lesser General Public License as published by the Free - * Software Foundation; either version 2 of the License, or (at your option) any - * later version. - * As a special exception, you may use this file as part of a free software - * library without restriction. Specifically, if other files instantiate - * templates or use macros or inline functions from this file, or you compile - * this file and link it with other files to produce an executable, this - * file does not by itself cause the resulting executable to be covered by - * the GNU Lesser General Public License. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * In plain-speak: do not worry about classes/macros/templates either - only - * changes to the library have to be LGPL, not an application linking with it. + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * To help fund GROMACS development, we humbly ask that you cite - * the papers people have written on it - you can find them on the website! + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _GENBORN_ALLVSALL_SSE2_SINGLE_H #define _GENBORN_ALLVSALL_SSE2_SINGLE_H diff --git a/src/gromacs/mdlib/genborn_sse2_double.c b/src/gromacs/mdlib/genborn_sse2_double.c index b6ebfbdd52..67d49ee24d 100644 --- a/src/gromacs/mdlib/genborn_sse2_double.c +++ b/src/gromacs/mdlib/genborn_sse2_double.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 4.5 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/genborn_sse2_double.h b/src/gromacs/mdlib/genborn_sse2_double.h index 070988f7b5..b7633f8407 100644 --- a/src/gromacs/mdlib/genborn_sse2_double.h +++ b/src/gromacs/mdlib/genborn_sse2_double.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _genborn_sse2_double_h #define _genborn_sse2_double_h diff --git a/src/gromacs/mdlib/genborn_sse2_single.c b/src/gromacs/mdlib/genborn_sse2_single.c index d75ed2b298..30b9a0874f 100644 --- a/src/gromacs/mdlib/genborn_sse2_single.c +++ b/src/gromacs/mdlib/genborn_sse2_single.c @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/genborn_sse2_single.h b/src/gromacs/mdlib/genborn_sse2_single.h index c252932844..c3c9b3a552 100644 --- a/src/gromacs/mdlib/genborn_sse2_single.h +++ b/src/gromacs/mdlib/genborn_sse2_single.h @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _genborn_sse_h #define _genborn_sse_h diff --git a/src/gromacs/mdlib/groupcoord.c b/src/gromacs/mdlib/groupcoord.c index 0d7d193f9e..644744bbd6 100644 --- a/src/gromacs/mdlib/groupcoord.c +++ b/src/gromacs/mdlib/groupcoord.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 4.5 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/groupcoord.h b/src/gromacs/mdlib/groupcoord.h index 25c8ca0977..373b56c729 100644 --- a/src/gromacs/mdlib/groupcoord.h +++ b/src/gromacs/mdlib/groupcoord.h @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /*! \file groupcoord.h diff --git a/src/gromacs/mdlib/init.c b/src/gromacs/mdlib/init.c index 29fbb35dde..a769362b1f 100644 --- a/src/gromacs/mdlib/init.c +++ b/src/gromacs/mdlib/init.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/iteratedconstraints.c b/src/gromacs/mdlib/iteratedconstraints.c index a682c6e164..5c3529f0f0 100644 --- a/src/gromacs/mdlib/iteratedconstraints.c +++ b/src/gromacs/mdlib/iteratedconstraints.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/md_support.c b/src/gromacs/mdlib/md_support.c index d60e052d9f..644e1a0394 100644 --- a/src/gromacs/mdlib/md_support.c +++ b/src/gromacs/mdlib/md_support.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/mdatom.c b/src/gromacs/mdlib/mdatom.c index 2ea89654b2..2adb477ef0 100644 --- a/src/gromacs/mdlib/mdatom.c +++ b/src/gromacs/mdlib/mdatom.c @@ -3,7 +3,7 @@ * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team. - * Copyright (c) 2013, by the GROMACS development team, led by + * Copyright (c) 2012,2013, by the GROMACS development team, led by * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, * and including many others, as listed in the AUTHORS file in the * top-level source directory and at http://www.gromacs.org. diff --git a/src/gromacs/mdlib/mdebin_bar.c b/src/gromacs/mdlib/mdebin_bar.c index 7ddebc0c86..2f9c96ede9 100644 --- a/src/gromacs/mdlib/mdebin_bar.c +++ b/src/gromacs/mdlib/mdebin_bar.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/mdebin_bar.h b/src/gromacs/mdlib/mdebin_bar.h index 90c85b58e4..8da7c38fef 100644 --- a/src/gromacs/mdlib/mdebin_bar.h +++ b/src/gromacs/mdlib/mdebin_bar.h @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs On Most of All Computer Systems + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _mdebin_bar_h diff --git a/src/gromacs/mdlib/minimize.c b/src/gromacs/mdlib/minimize.c index 09083dc693..83edfb7d0d 100644 --- a/src/gromacs/mdlib/minimize.c +++ b/src/gromacs/mdlib/minimize.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/mvxvf.c b/src/gromacs/mdlib/mvxvf.c index 27507dc30e..7ff89e02f6 100644 --- a/src/gromacs/mdlib/mvxvf.c +++ b/src/gromacs/mdlib/mvxvf.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/nlistheuristics.c b/src/gromacs/mdlib/nlistheuristics.c index 57e95efeff..d3c2df9d46 100644 --- a/src/gromacs/mdlib/nlistheuristics.c +++ b/src/gromacs/mdlib/nlistheuristics.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/ns.c b/src/gromacs/mdlib/ns.c index 6a21eea818..4f2f7774e9 100644 --- a/src/gromacs/mdlib/ns.c +++ b/src/gromacs/mdlib/ns.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- - * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations +/* + * This file is part of the GROMACS molecular simulation package. * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/nsgrid.c b/src/gromacs/mdlib/nsgrid.c index de760db851..5e5c7906bf 100644 --- a/src/gromacs/mdlib/nsgrid.c +++ b/src/gromacs/mdlib/nsgrid.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/partdec.c b/src/gromacs/mdlib/partdec.c index 2ddc660fba..6bd1f1818d 100644 --- a/src/gromacs/mdlib/partdec.c +++ b/src/gromacs/mdlib/partdec.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/perf_est.c b/src/gromacs/mdlib/perf_est.c index 37bc1f0bb7..33c6d010e6 100644 --- a/src/gromacs/mdlib/perf_est.c +++ b/src/gromacs/mdlib/perf_est.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2012, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/pull.c b/src/gromacs/mdlib/pull.c index 9e39e5f80e..a63733e537 100644 --- a/src/gromacs/mdlib/pull.c +++ b/src/gromacs/mdlib/pull.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/pull_rotation.c b/src/gromacs/mdlib/pull_rotation.c index 00dc82c0c5..9973cfeb93 100644 --- a/src/gromacs/mdlib/pull_rotation.c +++ b/src/gromacs/mdlib/pull_rotation.c @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/pullutil.c b/src/gromacs/mdlib/pullutil.c index ac2964ffb7..bbcb85f9e7 100644 --- a/src/gromacs/mdlib/pullutil.c +++ b/src/gromacs/mdlib/pullutil.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/qm_gamess.c b/src/gromacs/mdlib/qm_gamess.c index 2d446c694c..4fb34c2079 100644 --- a/src/gromacs/mdlib/qm_gamess.c +++ b/src/gromacs/mdlib/qm_gamess.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/qm_gaussian.c b/src/gromacs/mdlib/qm_gaussian.c index 440e59559d..e0d749c0fc 100644 --- a/src/gromacs/mdlib/qm_gaussian.c +++ b/src/gromacs/mdlib/qm_gaussian.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/qm_mopac.c b/src/gromacs/mdlib/qm_mopac.c index 59907d6715..a35c541f43 100644 --- a/src/gromacs/mdlib/qm_mopac.c +++ b/src/gromacs/mdlib/qm_mopac.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/qm_orca.c b/src/gromacs/mdlib/qm_orca.c index 4b191b5a2c..0d5535a2d1 100644 --- a/src/gromacs/mdlib/qm_orca.c +++ b/src/gromacs/mdlib/qm_orca.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 4.5 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Groningen Machine for Chemical Simulation + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/qmmm.c b/src/gromacs/mdlib/qmmm.c index 480759b95b..e0d45d2a61 100644 --- a/src/gromacs/mdlib/qmmm.c +++ b/src/gromacs/mdlib/qmmm.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/rf_util.c b/src/gromacs/mdlib/rf_util.c index c7c6ba48d8..e87104785e 100644 --- a/src/gromacs/mdlib/rf_util.c +++ b/src/gromacs/mdlib/rf_util.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/shakef.c b/src/gromacs/mdlib/shakef.c index 8e605bc73a..950c45a1b5 100644 --- a/src/gromacs/mdlib/shakef.c +++ b/src/gromacs/mdlib/shakef.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/shellfc.c b/src/gromacs/mdlib/shellfc.c index 6a735da82b..045a8b05e6 100644 --- a/src/gromacs/mdlib/shellfc.c +++ b/src/gromacs/mdlib/shellfc.c @@ -1,35 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/stat.c b/src/gromacs/mdlib/stat.c index 23a09035a1..d10e6c1e28 100644 --- a/src/gromacs/mdlib/stat.c +++ b/src/gromacs/mdlib/stat.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROningen Mixture of Alchemy and Childrens' Stories + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/tgroup.c b/src/gromacs/mdlib/tgroup.c index 24d15a9b02..f56fd36d24 100644 --- a/src/gromacs/mdlib/tgroup.c +++ b/src/gromacs/mdlib/tgroup.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/tpi.c b/src/gromacs/mdlib/tpi.c index 1152abd6be..aa111f03df 100644 --- a/src/gromacs/mdlib/tpi.c +++ b/src/gromacs/mdlib/tpi.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/update.c b/src/gromacs/mdlib/update.c index 52fed76017..2297ec1e06 100644 --- a/src/gromacs/mdlib/update.c +++ b/src/gromacs/mdlib/update.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/vcm.c b/src/gromacs/mdlib/vcm.c index a13ebe1030..91c9d9160e 100644 --- a/src/gromacs/mdlib/vcm.c +++ b/src/gromacs/mdlib/vcm.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/vsite.c b/src/gromacs/mdlib/vsite.c index 049d3d7ac7..9f0f166022 100644 --- a/src/gromacs/mdlib/vsite.c +++ b/src/gromacs/mdlib/vsite.c @@ -1,37 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/gromacs/mdlib/wall.c b/src/gromacs/mdlib/wall.c index 32210f7dca..c5e1e7493a 100644 --- a/src/gromacs/mdlib/wall.c +++ b/src/gromacs/mdlib/wall.c @@ -1,36 +1,38 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2008, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2008, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H diff --git a/src/gromacs/mdlib/wnblist.c b/src/gromacs/mdlib/wnblist.c index 6ef7ed8b9b..84661b0cf0 100644 --- a/src/gromacs/mdlib/wnblist.c +++ b/src/gromacs/mdlib/wnblist.c @@ -1,36 +1,38 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2004, The GROMACS development team, - * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2001-2004, The GROMACS development team. + * Copyright (c) 2013, by the GROMACS development team, led by + * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, + * and including many others, as listed in the AUTHORS file in the + * top-level source directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * GROwing Monsters And Cloning Shrimps + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /* This file is completely threadsafe - keep it that way! */ #ifdef HAVE_CONFIG_H -- 2.22.0