From: Justin Lemkul Date: Fri, 14 Jan 2011 14:00:18 +0000 (-0500) Subject: Fixes to grompp -maxwarn documentation. Issue ID #627 X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=commitdiff_plain;h=f9a9acb61e9742936422208de5a851ab712d7f42;p=alexxy%2Fgromacs.git Fixes to grompp -maxwarn documentation. Issue ID #627 --- diff --git a/src/kernel/grompp.c b/src/kernel/grompp.c index 926614efb8..8dafa1a3c5 100644 --- a/src/kernel/grompp.c +++ b/src/kernel/grompp.c @@ -1209,7 +1209,13 @@ int main (int argc, char *argv[]) "with the [TT]-debug[tt] option which will give you more information", "in a file called grompp.log (along with real debug info). Finally, you", "can see the contents of the run input file with the [TT]gmxdump[tt]", - "program." + "program.[PAR]" + + "The [TT]-maxwarn[tt] option can be used to override warnings printed", + "by grompp that otherwise halt output. In some cases, warnings are", + "harmless, but usually they are not. The user is advised to carefully", + "interpret the output messages before attempting to bypass them with", + "this option." }; t_gromppopts *opts; gmx_mtop_t *sys; @@ -1264,7 +1270,7 @@ int main (int argc, char *argv[]) { "-rmvsbds",FALSE, etBOOL, {&bRmVSBds}, "Remove constant bonded interactions with virtual sites" }, { "-maxwarn", FALSE, etINT, {&maxwarn}, - "Number of allowed warnings during input processing" }, + "Number of allowed warnings during input processing. Not for normal use and may generate unstable systems" }, { "-zero", FALSE, etBOOL, {&bZero}, "Set parameters for bonded interactions without defaults to zero instead of generating an error" }, { "-renum", FALSE, etBOOL, {&bRenum},