From: Mark Abraham Date: Wed, 20 Feb 2013 10:04:48 +0000 (+0100) Subject: Update shell completions X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=commitdiff_plain;h=ca99be56a0fb6eeeac1c88b99fd8c5ad0ff01c1d;p=alexxy%2Fgromacs.git Update shell completions There's some strange changes of what completions are being generated for inputs that take multiple files when generated by different 4.6.x versions, but nobody seems to know what is going on. Also, those problems do not have a large impact. Refs #1159 Change-Id: Ib4b1ad4999e1b68904d46b0d01c2a5dd07507fd7 --- diff --git a/scripts/completion.bash b/scripts/completion.bash index ac5d6b5e54..e0b92294be 100644 --- a/scripts/completion.bash +++ b/scripts/completion.bash @@ -606,7 +606,7 @@ shopt -s extglob _g_hbond_compl() { local p c COMPREPLY=() c=${COMP_WORDS[COMP_CWORD]} p=${COMP_WORDS[COMP_CWORD-1]} -if (( $COMP_CWORD <= 1 )) || [[ $c == -* ]]; then COMPREPLY=( $(compgen -W ' -f -s -n -num -g -ac -dist -ang -hx -hbn -hbm -don -dan -life -nhbdist -h -version -nice -b -e -dt -tu -xvg -a -r -noda -r2 -abin -rbin -nonitacc -contact -shell -fitstart -fitstart -temp -smooth -dump -max_hb -nomerge -geminate -diff -acflen -nonormalize -P -fitfn -ncskip -beginfit -endfit' -- $c)); return 0; fi +if (( $COMP_CWORD <= 1 )) || [[ $c == -* ]]; then COMPREPLY=( $(compgen -W ' -f -s -n -num -g -ac -dist -ang -hx -hbn -hbm -don -dan -life -nhbdist -h -version -nice -b -e -dt -tu -xvg -a -r -noda -r2 -abin -rbin -nonitacc -contact -shell -fitstart -fitstart -temp -smooth -dump -max_hb -nomerge -geminate -diff -nthreads -acflen -nonormalize -P -fitfn -ncskip -beginfit -endfit' -- $c)); return 0; fi case "$p" in -tu) COMPREPLY=( $(compgen -W ' fs ps ns us ms s ' -- $c ));; -xvg) COMPREPLY=( $(compgen -W ' xmgrace xmgr none ' -- $c ));; @@ -1121,7 +1121,7 @@ shopt -s extglob _g_sans_compl() { local p c COMPREPLY=() c=${COMP_WORDS[COMP_CWORD]} p=${COMP_WORDS[COMP_CWORD-1]} -if (( $COMP_CWORD <= 1 )) || [[ $c == -* ]]; then COMPREPLY=( $(compgen -W ' -s -f -n -d -pr -sq -prframe -sqframe -h -version -nice -b -e -dt -tu -xvg -mode -mcover -nopbc -startq -endq -qstep -seed' -- $c)); return 0; fi +if (( $COMP_CWORD <= 1 )) || [[ $c == -* ]]; then COMPREPLY=( $(compgen -W ' -s -f -n -d -pr -sq -prframe -sqframe -h -version -nice -b -e -dt -tu -xvg -mode -mcover -nopbc -startq -endq -qstep -seed -nt' -- $c)); return 0; fi case "$p" in -tu) COMPREPLY=( $(compgen -W ' fs ps ns us ms s ' -- $c ));; -xvg) COMPREPLY=( $(compgen -W ' xmgrace xmgr none ' -- $c ));; @@ -1495,10 +1495,11 @@ shopt -s extglob _mdrun_compl() { local p c COMPREPLY=() c=${COMP_WORDS[COMP_CWORD]} p=${COMP_WORDS[COMP_CWORD-1]} -if (( $COMP_CWORD <= 1 )) || [[ $c == -* ]]; then COMPREPLY=( $(compgen -W ' -s -o -x -cpi -cpo -c -e -g -dhdl -field -table -tabletf -tablep -tableb -rerun -tpi -tpid -ei -eo -j -jo -ffout -devout -runav -px -pf -ro -ra -rs -rt -mtx -dn -multidir -membed -mp -mn -h -version -nice -deffnm -xvg -pd -dd -ddorder -npme -nt -ntmpi -ntomp -ntomp_pme -nopin -pinht -pinoffset -gpu_id -noddcheck -rdd -rcon -dlb -dds -gcom -nb -notunepme -testverlet -v -nocompact -seppot -pforce -reprod -cpt -cpnum -noappend -nsteps -maxh -multi -replex -nex -reseed -ionize' -- $c)); return 0; fi +if (( $COMP_CWORD <= 1 )) || [[ $c == -* ]]; then COMPREPLY=( $(compgen -W ' -s -o -x -cpi -cpo -c -e -g -dhdl -field -table -tabletf -tablep -tableb -rerun -tpi -tpid -ei -eo -j -jo -ffout -devout -runav -px -pf -ro -ra -rs -rt -mtx -dn -multidir -membed -mp -mn -h -version -nice -deffnm -xvg -pd -dd -ddorder -npme -nt -ntmpi -ntomp -ntomp_pme -pin -pinoffset -pinstride -gpu_id -noddcheck -rdd -rcon -dlb -dds -gcom -nb -notunepme -testverlet -v -nocompact -seppot -pforce -reprod -cpt -cpnum -noappend -nsteps -maxh -multi -replex -nex -reseed -ionize' -- $c)); return 0; fi case "$p" in -xvg) COMPREPLY=( $(compgen -W ' xmgrace xmgr none ' -- $c ));; -ddorder) COMPREPLY=( $(compgen -W ' interleave pp_pme cartesian ' -- $c ));; +-pin) COMPREPLY=( $(compgen -W ' auto on off ' -- $c ));; -dlb) COMPREPLY=( $(compgen -W ' auto no yes ' -- $c ));; -nb) COMPREPLY=( $(compgen -W ' auto cpu gpu gpu_cpu ' -- $c ));; -s) COMPREPLY=( $(compgen -X '!*.+(tpr|tpb|tpa)*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; @@ -1533,7 +1534,7 @@ case "$p" in -rt) COMPREPLY=( $(compgen -X '!*.log*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -mtx) COMPREPLY=( $(compgen -X '!*.mtx*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -dn) COMPREPLY=( $(compgen -X '!*.ndx*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; --multidir) COMPREPLY=( $(compgen -X '!*.rundir*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; +-multidir) COMPREPLY=( $(compgen -X '!*.*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -membed) COMPREPLY=( $(compgen -X '!*.dat*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -mp) COMPREPLY=( $(compgen -X '!*.top*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -mn) COMPREPLY=( $(compgen -X '!*.ndx*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; @@ -1543,10 +1544,11 @@ shopt -s extglob _mdrun_mpi_compl() { local p c COMPREPLY=() c=${COMP_WORDS[COMP_CWORD]} p=${COMP_WORDS[COMP_CWORD-1]} -if (( $COMP_CWORD <= 1 )) || [[ $c == -* ]]; then COMPREPLY=( $(compgen -W ' -s -o -x -cpi -cpo -c -e -g -dhdl -field -table -tabletf -tablep -tableb -rerun -tpi -tpid -ei -eo -j -jo -ffout -devout -runav -px -pf -ro -ra -rs -rt -mtx -dn -multidir -membed -mp -mn -h -version -nice -deffnm -xvg -pd -dd -ddorder -npme -nt -ntmpi -ntomp -ntomp_pme -nopin -pinht -pinoffset -gpu_id -noddcheck -rdd -rcon -dlb -dds -gcom -nb -notunepme -testverlet -v -nocompact -seppot -pforce -reprod -cpt -cpnum -noappend -nsteps -maxh -multi -replex -nex -reseed -ionize' -- $c)); return 0; fi +if (( $COMP_CWORD <= 1 )) || [[ $c == -* ]]; then COMPREPLY=( $(compgen -W ' -s -o -x -cpi -cpo -c -e -g -dhdl -field -table -tabletf -tablep -tableb -rerun -tpi -tpid -ei -eo -j -jo -ffout -devout -runav -px -pf -ro -ra -rs -rt -mtx -dn -multidir -membed -mp -mn -h -version -nice -deffnm -xvg -pd -dd -ddorder -npme -nt -ntmpi -ntomp -ntomp_pme -pin -pinoffset -pinstride -gpu_id -noddcheck -rdd -rcon -dlb -dds -gcom -nb -notunepme -testverlet -v -nocompact -seppot -pforce -reprod -cpt -cpnum -noappend -nsteps -maxh -multi -replex -nex -reseed -ionize' -- $c)); return 0; fi case "$p" in -xvg) COMPREPLY=( $(compgen -W ' xmgrace xmgr none ' -- $c ));; -ddorder) COMPREPLY=( $(compgen -W ' interleave pp_pme cartesian ' -- $c ));; +-pin) COMPREPLY=( $(compgen -W ' auto on off ' -- $c ));; -dlb) COMPREPLY=( $(compgen -W ' auto no yes ' -- $c ));; -nb) COMPREPLY=( $(compgen -W ' auto cpu gpu gpu_cpu ' -- $c ));; -s) COMPREPLY=( $(compgen -X '!*.+(tpr|tpb|tpa)*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; @@ -1567,7 +1569,7 @@ case "$p" in -tpi) COMPREPLY=( $(compgen -X '!*.xvg*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -tpid) COMPREPLY=( $(compgen -X '!*.xvg*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -ei) COMPREPLY=( $(compgen -X '!*.edi*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; --eo) COMPREPLY=( $(compgen -X '!*.edo*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; +-eo) COMPREPLY=( $(compgen -X '!*.xvg*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -j) COMPREPLY=( $(compgen -X '!*.gct*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -jo) COMPREPLY=( $(compgen -X '!*.gct*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -ffout) COMPREPLY=( $(compgen -X '!*.xvg*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; @@ -1581,7 +1583,7 @@ case "$p" in -rt) COMPREPLY=( $(compgen -X '!*.log*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -mtx) COMPREPLY=( $(compgen -X '!*.mtx*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -dn) COMPREPLY=( $(compgen -X '!*.ndx*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; --multidir) COMPREPLY=( $(compgen -X '!*.rundir*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; +-multidir) COMPREPLY=( $(compgen -X '!*.line_buf*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -membed) COMPREPLY=( $(compgen -X '!*.dat*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -mp) COMPREPLY=( $(compgen -X '!*.top*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; -mn) COMPREPLY=( $(compgen -X '!*.ndx*(.gz|.Z)' -f $c ; compgen -S '/' -X '.*' -d $c ));; diff --git a/scripts/completion.csh b/scripts/completion.csh index 926388da68..c52ffd8001 100644 --- a/scripts/completion.csh +++ b/scripts/completion.csh @@ -33,7 +33,7 @@ complete genrestr "n/-f/f:*.{gro,g96,pdb,brk,ent,esp,xyz,tpr,tpb,tpa}{,.gz,.Z}/" complete g_filter "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa,gro,g96,pdb,brk,ent}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-ol/f:*.{xtc,trr,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-oh/f:*.{xtc,trr,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "c/-/( f s n ol oh h version nice b e dt w nf all nonojump fit)/" complete g_gyrate "n/-xvg/( xmgrace xmgr none)/" "n/-P/( 0 1 2 3)/" "n/-fitfn/( none exp aexp exp_exp vac exp5 exp7 exp9 erffit)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa,gro,g96,pdb,brk,ent}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-o/f:*.xvg{,.gz,.Z}/" "n/-acf/f:*.xvg{,.gz,.Z}/" "c/-/( f s n o acf h version nice b e dt w xvg nmol q p moi nz acflen nonormalize P fitfn ncskip beginfit endfit)/" complete g_h2order "n/-xvg/( xmgrace xmgr none)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-nm/f:*.ndx{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-o/f:*.xvg{,.gz,.Z}/" "c/-/( f n nm s o h version nice b e dt w xvg d sl)/" -complete g_hbond "n/-tu/( fs ps ns us ms s)/" "n/-xvg/( xmgrace xmgr none)/" "n/-geminate/( none dd ad aa a4)/" "n/-P/( 0 1 2 3)/" "n/-fitfn/( none exp aexp exp_exp vac exp5 exp7 exp9 erffit)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-num/f:*.xvg{,.gz,.Z}/" "n/-g/f:*.log{,.gz,.Z}/" "n/-ac/f:*.xvg{,.gz,.Z}/" "n/-dist/f:*.xvg{,.gz,.Z}/" "n/-ang/f:*.xvg{,.gz,.Z}/" "n/-hx/f:*.xvg{,.gz,.Z}/" "n/-hbn/f:*.ndx{,.gz,.Z}/" "n/-hbm/f:*.xpm{,.gz,.Z}/" "n/-don/f:*.xvg{,.gz,.Z}/" "n/-dan/f:*.xvg{,.gz,.Z}/" "n/-life/f:*.xvg{,.gz,.Z}/" "n/-nhbdist/f:*.xvg{,.gz,.Z}/" "c/-/( f s n num g ac dist ang hx hbn hbm don dan life nhbdist h version nice b e dt tu xvg a r noda r2 abin rbin nonitacc contact shell fitstart fitstart temp smooth dump max_hb nomerge geminate diff acflen nonormalize P fitfn ncskip beginfit endfit)/" +complete g_hbond "n/-tu/( fs ps ns us ms s)/" "n/-xvg/( xmgrace xmgr none)/" "n/-geminate/( none dd ad aa a4)/" "n/-P/( 0 1 2 3)/" "n/-fitfn/( none exp aexp exp_exp vac exp5 exp7 exp9 erffit)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-num/f:*.xvg{,.gz,.Z}/" "n/-g/f:*.log{,.gz,.Z}/" "n/-ac/f:*.xvg{,.gz,.Z}/" "n/-dist/f:*.xvg{,.gz,.Z}/" "n/-ang/f:*.xvg{,.gz,.Z}/" "n/-hx/f:*.xvg{,.gz,.Z}/" "n/-hbn/f:*.ndx{,.gz,.Z}/" "n/-hbm/f:*.xpm{,.gz,.Z}/" "n/-don/f:*.xvg{,.gz,.Z}/" "n/-dan/f:*.xvg{,.gz,.Z}/" "n/-life/f:*.xvg{,.gz,.Z}/" "n/-nhbdist/f:*.xvg{,.gz,.Z}/" "c/-/( f s n num g ac dist ang hx hbn hbm don dan life nhbdist h version nice b e dt tu xvg a r noda r2 abin rbin nonitacc contact shell fitstart fitstart temp smooth dump max_hb nomerge geminate diff nthreads acflen nonormalize P fitfn ncskip beginfit endfit)/" complete g_helix "n/-prop/( RAD TWIST RISE LEN NHX DIP RMS CPHI RMSA PHI PSI HB3 HB4 HB5 CD222)/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-to/f:*.g87{,.gz,.Z}/" "n/-cz/f:*.{gro,g96,pdb,brk,ent,esp,xyz}{,.gz,.Z}/" "n/-co/f:*.{gro,g96,pdb,brk,ent,esp,xyz}{,.gz,.Z}/" "c/-/( s n f to cz co h version nice b e dt w r0 q noF db prop ev ahxstart ahxend)/" complete g_helixorient "n/-xvg/( xmgrace xmgr none)/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-oaxis/f:*.dat{,.gz,.Z}/" "n/-ocenter/f:*.dat{,.gz,.Z}/" "n/-orise/f:*.xvg{,.gz,.Z}/" "n/-oradius/f:*.xvg{,.gz,.Z}/" "n/-otwist/f:*.xvg{,.gz,.Z}/" "n/-obending/f:*.xvg{,.gz,.Z}/" "n/-otilt/f:*.xvg{,.gz,.Z}/" "n/-orot/f:*.xvg{,.gz,.Z}/" "c/-/( s f n oaxis ocenter orise oradius otwist obending otilt orot h version nice b e dt xvg sidechain incremental)/" complete g_hydorder "n/-d/( z x y)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-o/f:*.xpm{,.gz,.Z}/" "n/-or/f:*.out{,.gz,.Z}/" "n/-Spect/f:*.out{,.gz,.Z}/" "c/-/( f n s o or Spect h version nice b e dt w d bw sgang1 sgang2 tblock nlevel)/" @@ -65,7 +65,7 @@ complete grompp "n/-f/f:*.mdp{,.gz,.Z}/" "n/-po/f:*.mdp{,.gz,.Z}/" "n/-c/f:*.{gr complete g_rotacf "n/-xvg/( xmgrace xmgr none)/" "n/-P/( 0 1 2 3)/" "n/-fitfn/( none exp aexp exp_exp vac exp5 exp7 exp9 erffit)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-o/f:*.xvg{,.gz,.Z}/" "c/-/( f s n o h version nice b e dt w xvg d noaver acflen nonormalize P fitfn ncskip beginfit endfit)/" complete g_rotmat "n/-xvg/( xmgrace xmgr none)/" "n/-ref/( none xyz xy)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa,gro,g96,pdb,brk,ent}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-o/f:*.xvg{,.gz,.Z}/" "c/-/( f s n o h version nice b e dt w xvg ref skip fitxy nomw)/" complete g_saltbr "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "c/-/( f s h version nice b e dt t sep)/" -complete g_sans "n/-tu/( fs ps ns us ms s)/" "n/-xvg/( xmgrace xmgr none)/" "n/-mode/( direct mc)/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-d/f:*.dat{,.gz,.Z}/" "n/-pr/f:*.xvg{,.gz,.Z}/" "n/-sq/f:*.xvg{,.gz,.Z}/" "n/-prframe/f:*.xvg{,.gz,.Z}/" "n/-sqframe/f:*.xvg{,.gz,.Z}/" "c/-/( s f n d pr sq prframe sqframe h version nice b e dt tu xvg mode mcover nopbc startq endq qstep seed)/" +complete g_sans "n/-tu/( fs ps ns us ms s)/" "n/-xvg/( xmgrace xmgr none)/" "n/-mode/( direct mc)/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-d/f:*.dat{,.gz,.Z}/" "n/-pr/f:*.xvg{,.gz,.Z}/" "n/-sq/f:*.xvg{,.gz,.Z}/" "n/-prframe/f:*.xvg{,.gz,.Z}/" "n/-sqframe/f:*.xvg{,.gz,.Z}/" "c/-/( s f n d pr sq prframe sqframe h version nice b e dt tu xvg mode mcover nopbc startq endq qstep seed nt)/" complete g_sas "n/-xvg/( xmgrace xmgr none)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa,gro,g96,pdb,brk,ent}{,.gz,.Z}/" "n/-o/f:*.xvg{,.gz,.Z}/" "n/-or/f:*.xvg{,.gz,.Z}/" "n/-oa/f:*.xvg{,.gz,.Z}/" "n/-tv/f:*.xvg{,.gz,.Z}/" "n/-q/f:*.pdb{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-i/f:*.itp{,.gz,.Z}/" "c/-/( f s o or oa tv q n i h version nice b e dt w xvg probe ndots qmax f_index minarea nopbc noprot dgs)/" complete g_select "n/-xvg/( xmgrace xmgr none)/" "n/-selrpos/( atom res_com res_cog mol_com mol_cog whole_res_com whole_res_cog whole_mol_com whole_mol_cog part_res_com part_res_cog part_mol_com part_mol_cog dyn_res_com dyn_res_cog dyn_mol_com dyn_mol_cog)/" "n/-seltype/( atom res_com res_cog mol_com mol_cog whole_res_com whole_res_cog whole_mol_com whole_mol_cog part_res_com part_res_cog part_mol_com part_mol_cog dyn_res_com dyn_res_cog dyn_mol_com dyn_mol_cog)/" "n/-resnr/( number index)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa,gro,g96,pdb,brk,ent}{,.gz,.Z}/" "n/-sf/f:*.dat{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-os/f:*.xvg{,.gz,.Z}/" "n/-oc/f:*.xvg{,.gz,.Z}/" "n/-oi/f:*.dat{,.gz,.Z}/" "n/-om/f:*.dat{,.gz,.Z}/" "n/-on/f:*.ndx{,.gz,.Z}/" "c/-/( f s sf n os oc oi om on h version nice b e dt xvg normpbc nopbc select selrpos seltype dump norm cfnorm resnr)/" complete g_sgangle "n/-xvg/( xmgrace xmgr none)/" "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-oa/f:*.xvg{,.gz,.Z}/" "n/-od/f:*.xvg{,.gz,.Z}/" "n/-od1/f:*.xvg{,.gz,.Z}/" "n/-od2/f:*.xvg{,.gz,.Z}/" "c/-/( f n s oa od od1 od2 h version nice b e dt w xvg one z)/" @@ -85,8 +85,8 @@ complete g_x2top "n/-f/f:*.{gro,g96,pdb,brk,ent,esp,xyz,tpr,tpb,tpa}{,.gz,.Z}/" complete g_xrama "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "c/-/( f s h version nice b e dt)/" complete make_edi "n/-xvg/( xmgrace xmgr none)/" "n/-f/f:*.{trr,cpt,trj}{,.gz,.Z}/" "n/-eig/f:*.xvg{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa,gro,g96,pdb,brk,ent}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-tar/f:*.{gro,g96,pdb,brk,ent,esp,xyz,tpr,tpb,tpa}{,.gz,.Z}/" "n/-ori/f:*.{gro,g96,pdb,brk,ent,esp,xyz,tpr,tpb,tpa}{,.gz,.Z}/" "n/-o/f:*.edi{,.gz,.Z}/" "c/-/( f eig s n tar ori o h version nice xvg mon linfix linacc radfix radacc radcon flood outfrq slope linstep accdir radstep maxedsteps eqsteps deltaF0 deltaF tau Eflnull T alpha restrain hessian harmonic constF)/" complete make_ndx "n/-f/f:*.{gro,g96,pdb,brk,ent,esp,xyz,tpr,tpb,tpa}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-o/f:*.ndx{,.gz,.Z}/" "c/-/( f n o h version nice natoms)/" -complete mdrun "n/-xvg/( xmgrace xmgr none)/" "n/-ddorder/( interleave pp_pme cartesian)/" "n/-dlb/( auto no yes)/" "n/-nb/( auto cpu gpu gpu_cpu)/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-o/f:*.{trr,cpt,trj}{,.gz,.Z}/" "n/-x/f:*.xtc{,.gz,.Z}/" "n/-cpi/f:*.cpt{,.gz,.Z}/" "n/-cpo/f:*.cpt{,.gz,.Z}/" "n/-c/f:*.{gro,g96,pdb,brk,ent,esp,xyz}{,.gz,.Z}/" "n/-e/f:*.edr{,.gz,.Z}/" "n/-g/f:*.log{,.gz,.Z}/" "n/-dhdl/f:*.xvg{,.gz,.Z}/" "n/-field/f:*.xvg{,.gz,.Z}/" "n/-table/f:*.xvg{,.gz,.Z}/" "n/-tabletf/f:*.xvg{,.gz,.Z}/" "n/-tablep/f:*.xvg{,.gz,.Z}/" "n/-tableb/f:*.xvg{,.gz,.Z}/" "n/-rerun/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-tpi/f:*.xvg{,.gz,.Z}/" "n/-tpid/f:*.xvg{,.gz,.Z}/" "n/-ei/f:*.edi{,.gz,.Z}/" "n/-eo/f:*.xvg{,.gz,.Z}/" "n/-j/f:*.gct{,.gz,.Z}/" "n/-jo/f:*.gct{,.gz,.Z}/" "n/-ffout/f:*.xvg{,.gz,.Z}/" "n/-devout/f:*.xvg{,.gz,.Z}/" "n/-runav/f:*.xvg{,.gz,.Z}/" "n/-px/f:*.xvg{,.gz,.Z}/" "n/-pf/f:*.xvg{,.gz,.Z}/" "n/-ro/f:*.xvg{,.gz,.Z}/" "n/-ra/f:*.log{,.gz,.Z}/" "n/-rs/f:*.log{,.gz,.Z}/" "n/-rt/f:*.log{,.gz,.Z}/" "n/-mtx/f:*.mtx{,.gz,.Z}/" "n/-dn/f:*.ndx{,.gz,.Z}/" "n/-multidir/f:*.rundir{,.gz,.Z}/" "n/-membed/f:*.dat{,.gz,.Z}/" "n/-mp/f:*.top{,.gz,.Z}/" "n/-mn/f:*.ndx{,.gz,.Z}/" "c/-/( s o x cpi cpo c e g dhdl field table tabletf tablep tableb rerun tpi tpid ei eo j jo ffout devout runav px pf ro ra rs rt mtx dn multidir membed mp mn h version nice deffnm xvg pd dd ddorder npme nt ntmpi ntomp ntomp_pme nopin pinht pinoffset gpu_id noddcheck rdd rcon dlb dds gcom nb notunepme testverlet v nocompact seppot pforce reprod cpt cpnum noappend nsteps maxh multi replex nex reseed ionize)/" -complete mdrun_mpi "n/-xvg/( xmgrace xmgr none)/" "n/-ddorder/( interleave pp_pme cartesian)/" "n/-dlb/( auto no yes)/" "n/-nb/( auto cpu gpu gpu_cpu)/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-o/f:*.{trr,cpt,trj}{,.gz,.Z}/" "n/-x/f:*.xtc{,.gz,.Z}/" "n/-cpi/f:*.cpt{,.gz,.Z}/" "n/-cpo/f:*.cpt{,.gz,.Z}/" "n/-c/f:*.{gro,g96,pdb,brk,ent,esp,xyz}{,.gz,.Z}/" "n/-e/f:*.edr{,.gz,.Z}/" "n/-g/f:*.log{,.gz,.Z}/" "n/-dhdl/f:*.xvg{,.gz,.Z}/" "n/-field/f:*.xvg{,.gz,.Z}/" "n/-table/f:*.xvg{,.gz,.Z}/" "n/-tabletf/f:*.xvg{,.gz,.Z}/" "n/-tablep/f:*.xvg{,.gz,.Z}/" "n/-tableb/f:*.xvg{,.gz,.Z}/" "n/-rerun/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-tpi/f:*.xvg{,.gz,.Z}/" "n/-tpid/f:*.xvg{,.gz,.Z}/" "n/-ei/f:*.edi{,.gz,.Z}/" "n/-eo/f:*.edo{,.gz,.Z}/" "n/-j/f:*.gct{,.gz,.Z}/" "n/-jo/f:*.gct{,.gz,.Z}/" "n/-ffout/f:*.xvg{,.gz,.Z}/" "n/-devout/f:*.xvg{,.gz,.Z}/" "n/-runav/f:*.xvg{,.gz,.Z}/" "n/-px/f:*.xvg{,.gz,.Z}/" "n/-pf/f:*.xvg{,.gz,.Z}/" "n/-ro/f:*.xvg{,.gz,.Z}/" "n/-ra/f:*.log{,.gz,.Z}/" "n/-rs/f:*.log{,.gz,.Z}/" "n/-rt/f:*.log{,.gz,.Z}/" "n/-mtx/f:*.mtx{,.gz,.Z}/" "n/-dn/f:*.ndx{,.gz,.Z}/" "n/-multidir/f:*.rundir{,.gz,.Z}/" "n/-membed/f:*.dat{,.gz,.Z}/" "n/-mp/f:*.top{,.gz,.Z}/" "n/-mn/f:*.ndx{,.gz,.Z}/" "c/-/( s o x cpi cpo c e g dhdl field table tabletf tablep tableb rerun tpi tpid ei eo j jo ffout devout runav px pf ro ra rs rt mtx dn multidir membed mp mn h version nice deffnm xvg pd dd ddorder npme nt ntmpi ntomp ntomp_pme nopin pinht pinoffset gpu_id noddcheck rdd rcon dlb dds gcom nb notunepme testverlet v nocompact seppot pforce reprod cpt cpnum noappend nsteps maxh multi replex nex reseed ionize)/" +complete mdrun "n/-xvg/( xmgrace xmgr none)/" "n/-ddorder/( interleave pp_pme cartesian)/" "n/-pin/( auto on off)/" "n/-dlb/( auto no yes)/" "n/-nb/( auto cpu gpu gpu_cpu)/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-o/f:*.{trr,cpt,trj}{,.gz,.Z}/" "n/-x/f:*.xtc{,.gz,.Z}/" "n/-cpi/f:*.cpt{,.gz,.Z}/" "n/-cpo/f:*.cpt{,.gz,.Z}/" "n/-c/f:*.{gro,g96,pdb,brk,ent,esp,xyz}{,.gz,.Z}/" "n/-e/f:*.edr{,.gz,.Z}/" "n/-g/f:*.log{,.gz,.Z}/" "n/-dhdl/f:*.xvg{,.gz,.Z}/" "n/-field/f:*.xvg{,.gz,.Z}/" "n/-table/f:*.xvg{,.gz,.Z}/" "n/-tabletf/f:*.xvg{,.gz,.Z}/" "n/-tablep/f:*.xvg{,.gz,.Z}/" "n/-tableb/f:*.xvg{,.gz,.Z}/" "n/-rerun/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-tpi/f:*.xvg{,.gz,.Z}/" "n/-tpid/f:*.xvg{,.gz,.Z}/" "n/-ei/f:*.edi{,.gz,.Z}/" "n/-eo/f:*.xvg{,.gz,.Z}/" "n/-j/f:*.gct{,.gz,.Z}/" "n/-jo/f:*.gct{,.gz,.Z}/" "n/-ffout/f:*.xvg{,.gz,.Z}/" "n/-devout/f:*.xvg{,.gz,.Z}/" "n/-runav/f:*.xvg{,.gz,.Z}/" "n/-px/f:*.xvg{,.gz,.Z}/" "n/-pf/f:*.xvg{,.gz,.Z}/" "n/-ro/f:*.xvg{,.gz,.Z}/" "n/-ra/f:*.log{,.gz,.Z}/" "n/-rs/f:*.log{,.gz,.Z}/" "n/-rt/f:*.log{,.gz,.Z}/" "n/-mtx/f:*.mtx{,.gz,.Z}/" "n/-dn/f:*.ndx{,.gz,.Z}/" "n/-multidir/f:*.{,.gz,.Z}/" "n/-membed/f:*.dat{,.gz,.Z}/" "n/-mp/f:*.top{,.gz,.Z}/" "n/-mn/f:*.ndx{,.gz,.Z}/" "c/-/( s o x cpi cpo c e g dhdl field table tabletf tablep tableb rerun tpi tpid ei eo j jo ffout devout runav px pf ro ra rs rt mtx dn multidir membed mp mn h version nice deffnm xvg pd dd ddorder npme nt ntmpi ntomp ntomp_pme pin pinoffset pinstride gpu_id noddcheck rdd rcon dlb dds gcom nb notunepme testverlet v nocompact seppot pforce reprod cpt cpnum noappend nsteps maxh multi replex nex reseed ionize)/" +complete mdrun_mpi "n/-xvg/( xmgrace xmgr none)/" "n/-ddorder/( interleave pp_pme cartesian)/" "n/-pin/( auto on off)/" "n/-dlb/( auto no yes)/" "n/-nb/( auto cpu gpu gpu_cpu)/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-o/f:*.{trr,cpt,trj}{,.gz,.Z}/" "n/-x/f:*.xtc{,.gz,.Z}/" "n/-cpi/f:*.cpt{,.gz,.Z}/" "n/-cpo/f:*.cpt{,.gz,.Z}/" "n/-c/f:*.{gro,g96,pdb,brk,ent,esp,xyz}{,.gz,.Z}/" "n/-e/f:*.edr{,.gz,.Z}/" "n/-g/f:*.log{,.gz,.Z}/" "n/-dhdl/f:*.xvg{,.gz,.Z}/" "n/-field/f:*.xvg{,.gz,.Z}/" "n/-table/f:*.xvg{,.gz,.Z}/" "n/-tabletf/f:*.xvg{,.gz,.Z}/" "n/-tablep/f:*.xvg{,.gz,.Z}/" "n/-tableb/f:*.xvg{,.gz,.Z}/" "n/-rerun/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-tpi/f:*.xvg{,.gz,.Z}/" "n/-tpid/f:*.xvg{,.gz,.Z}/" "n/-ei/f:*.edi{,.gz,.Z}/" "n/-eo/f:*.xvg{,.gz,.Z}/" "n/-j/f:*.gct{,.gz,.Z}/" "n/-jo/f:*.gct{,.gz,.Z}/" "n/-ffout/f:*.xvg{,.gz,.Z}/" "n/-devout/f:*.xvg{,.gz,.Z}/" "n/-runav/f:*.xvg{,.gz,.Z}/" "n/-px/f:*.xvg{,.gz,.Z}/" "n/-pf/f:*.xvg{,.gz,.Z}/" "n/-ro/f:*.xvg{,.gz,.Z}/" "n/-ra/f:*.log{,.gz,.Z}/" "n/-rs/f:*.log{,.gz,.Z}/" "n/-rt/f:*.log{,.gz,.Z}/" "n/-mtx/f:*.mtx{,.gz,.Z}/" "n/-dn/f:*.ndx{,.gz,.Z}/" "n/-multidir/f:*.line_buf{,.gz,.Z}/" "n/-membed/f:*.dat{,.gz,.Z}/" "n/-mp/f:*.top{,.gz,.Z}/" "n/-mn/f:*.ndx{,.gz,.Z}/" "c/-/( s o x cpi cpo c e g dhdl field table tabletf tablep tableb rerun tpi tpid ei eo j jo ffout devout runav px pf ro ra rs rt mtx dn multidir membed mp mn h version nice deffnm xvg pd dd ddorder npme nt ntmpi ntomp ntomp_pme pin pinoffset pinstride gpu_id noddcheck rdd rcon dlb dds gcom nb notunepme testverlet v nocompact seppot pforce reprod cpt cpnum noappend nsteps maxh multi replex nex reseed ionize)/" complete mk_angndx "n/-type/( angle dihedral improper ryckaert-bellemans)/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "c/-/( s n h version nice type nohyd hq)/" complete ngmx "n/-f/f:*.{xtc,trr,cpt,trj,gro,g96,pdb,g87}{,.gz,.Z}/" "n/-s/f:*.{tpr,tpb,tpa}{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "c/-/( f s n h version nice b e dt)/" complete pdb2gmx "n/-chainsep/( id_or_ter id_and_ter ter id interactive)/" "n/-merge/( no all interactive)/" "n/-water/( select none spc spce tip3p tip4p tip5p)/" "n/-vsite/( none hydrogens aromatics)/" "n/-f/f:*.{gro,g96,pdb,brk,ent,esp,xyz,tpr,tpb,tpa}{,.gz,.Z}/" "n/-o/f:*.{gro,g96,pdb,brk,ent,esp,xyz}{,.gz,.Z}/" "n/-p/f:*.top{,.gz,.Z}/" "n/-i/f:*.itp{,.gz,.Z}/" "n/-n/f:*.ndx{,.gz,.Z}/" "n/-q/f:*.{gro,g96,pdb,brk,ent,esp,xyz}{,.gz,.Z}/" "c/-/( f o p i n q h version nice chainsep merge ff water inter ss ter lys arg asp glu gln his angle dist una ignh missing v posrefc vsite heavyh deuterate nochargegrp nocmap renum rtpres)/" diff --git a/scripts/completion.zsh b/scripts/completion.zsh index 0f876f05ae..3180574881 100644 --- a/scripts/completion.zsh +++ b/scripts/completion.zsh @@ -33,7 +33,7 @@ compctl -x 's[-]' -s " f n o of h version nice fc freeze disre disre_dist disre compctl -x 's[-]' -s " f s n ol oh h version nice b e dt w nf all nonojump fit" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa|gro|g96|pdb|brk|ent)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-ol]' -g '*.(xtc|trr|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-oh]' -g '*.(xtc|trr|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' -- g_filter compctl -x 's[-]' -s " f s n o acf h version nice b e dt w xvg nmol q p moi nz acflen nonormalize P fitfn ncskip beginfit endfit" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-P]' -s " 0 1 2 3" - 'c[-1,-fitfn]' -s " none exp aexp exp_exp vac exp5 exp7 exp9 erffit" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa|gro|g96|pdb|brk|ent)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-acf]' -g '*.xvg(|.gz|.Z) *(/)' -- g_gyrate compctl -x 's[-]' -s " f n nm s o h version nice b e dt w xvg d sl" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-nm]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.xvg(|.gz|.Z) *(/)' -- g_h2order -compctl -x 's[-]' -s " f s n num g ac dist ang hx hbn hbm don dan life nhbdist h version nice b e dt tu xvg a r noda r2 abin rbin nonitacc contact shell fitstart fitstart temp smooth dump max_hb nomerge geminate diff acflen nonormalize P fitfn ncskip beginfit endfit" - 'c[-1,-tu]' -s " fs ps ns us ms s" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-geminate]' -s " none dd ad aa a4" - 'c[-1,-P]' -s " 0 1 2 3" - 'c[-1,-fitfn]' -s " none exp aexp exp_exp vac exp5 exp7 exp9 erffit" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-num]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-g]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-ac]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-dist]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ang]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-hx]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-hbn]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-hbm]' -g '*.xpm(|.gz|.Z) *(/)' - 'c[-1,-don]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-dan]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-life]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-nhbdist]' -g '*.xvg(|.gz|.Z) *(/)' -- g_hbond +compctl -x 's[-]' -s " f s n num g ac dist ang hx hbn hbm don dan life nhbdist h version nice b e dt tu xvg a r noda r2 abin rbin nonitacc contact shell fitstart fitstart temp smooth dump max_hb nomerge geminate diff nthreads acflen nonormalize P fitfn ncskip beginfit endfit" - 'c[-1,-tu]' -s " fs ps ns us ms s" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-geminate]' -s " none dd ad aa a4" - 'c[-1,-P]' -s " 0 1 2 3" - 'c[-1,-fitfn]' -s " none exp aexp exp_exp vac exp5 exp7 exp9 erffit" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-num]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-g]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-ac]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-dist]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ang]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-hx]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-hbn]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-hbm]' -g '*.xpm(|.gz|.Z) *(/)' - 'c[-1,-don]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-dan]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-life]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-nhbdist]' -g '*.xvg(|.gz|.Z) *(/)' -- g_hbond compctl -x 's[-]' -s " s n f to cz co h version nice b e dt w r0 q noF db prop ev ahxstart ahxend" - 'c[-1,-prop]' -s " RAD TWIST RISE LEN NHX DIP RMS CPHI RMSA PHI PSI HB3 HB4 HB5 CD222" - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-to]' -g '*.g87(|.gz|.Z) *(/)' - 'c[-1,-cz]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz)(|.gz|.Z) *(/)' - 'c[-1,-co]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz)(|.gz|.Z) *(/)' -- g_helix compctl -x 's[-]' -s " s f n oaxis ocenter orise oradius otwist obending otilt orot h version nice b e dt xvg sidechain incremental" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-oaxis]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-ocenter]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-orise]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-oradius]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-otwist]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-obending]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-otilt]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-orot]' -g '*.xvg(|.gz|.Z) *(/)' -- g_helixorient compctl -x 's[-]' -s " f n s o or Spect h version nice b e dt w d bw sgang1 sgang2 tblock nlevel" - 'c[-1,-d]' -s " z x y" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.xpm(|.gz|.Z) *(/)' - 'c[-1,-or]' -g '*.out(|.gz|.Z) *(/)' - 'c[-1,-Spect]' -g '*.out(|.gz|.Z) *(/)' -- g_hydorder @@ -65,7 +65,7 @@ compctl -x 's[-]' -s " f po c r rb n p pp o t e ref h version nice v time normv compctl -x 's[-]' -s " f s n o h version nice b e dt w xvg d noaver acflen nonormalize P fitfn ncskip beginfit endfit" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-P]' -s " 0 1 2 3" - 'c[-1,-fitfn]' -s " none exp aexp exp_exp vac exp5 exp7 exp9 erffit" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.xvg(|.gz|.Z) *(/)' -- g_rotacf compctl -x 's[-]' -s " f s n o h version nice b e dt w xvg ref skip fitxy nomw" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-ref]' -s " none xyz xy" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa|gro|g96|pdb|brk|ent)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.xvg(|.gz|.Z) *(/)' -- g_rotmat compctl -x 's[-]' -s " f s h version nice b e dt t sep" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' -- g_saltbr -compctl -x 's[-]' -s " s f n d pr sq prframe sqframe h version nice b e dt tu xvg mode mcover nopbc startq endq qstep seed" - 'c[-1,-tu]' -s " fs ps ns us ms s" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-mode]' -s " direct mc" - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-d]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-pr]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-sq]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-prframe]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-sqframe]' -g '*.xvg(|.gz|.Z) *(/)' -- g_sans +compctl -x 's[-]' -s " s f n d pr sq prframe sqframe h version nice b e dt tu xvg mode mcover nopbc startq endq qstep seed nt" - 'c[-1,-tu]' -s " fs ps ns us ms s" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-mode]' -s " direct mc" - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-d]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-pr]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-sq]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-prframe]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-sqframe]' -g '*.xvg(|.gz|.Z) *(/)' -- g_sans compctl -x 's[-]' -s " f s o or oa tv q n i h version nice b e dt w xvg probe ndots qmax f_index minarea nopbc noprot dgs" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa|gro|g96|pdb|brk|ent)(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-or]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-oa]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tv]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-q]' -g '*.pdb(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-i]' -g '*.itp(|.gz|.Z) *(/)' -- g_sas compctl -x 's[-]' -s " f s sf n os oc oi om on h version nice b e dt xvg normpbc nopbc select selrpos seltype dump norm cfnorm resnr" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-selrpos]' -s " atom res_com res_cog mol_com mol_cog whole_res_com whole_res_cog whole_mol_com whole_mol_cog part_res_com part_res_cog part_mol_com part_mol_cog dyn_res_com dyn_res_cog dyn_mol_com dyn_mol_cog" - 'c[-1,-seltype]' -s " atom res_com res_cog mol_com mol_cog whole_res_com whole_res_cog whole_mol_com whole_mol_cog part_res_com part_res_cog part_mol_com part_mol_cog dyn_res_com dyn_res_cog dyn_mol_com dyn_mol_cog" - 'c[-1,-resnr]' -s " number index" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa|gro|g96|pdb|brk|ent)(|.gz|.Z) *(/)' - 'c[-1,-sf]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-os]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-oc]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-oi]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-om]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-on]' -g '*.ndx(|.gz|.Z) *(/)' -- g_select compctl -x 's[-]' -s " f n s oa od od1 od2 h version nice b e dt w xvg one z" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-oa]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-od]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-od1]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-od2]' -g '*.xvg(|.gz|.Z) *(/)' -- g_sgangle @@ -85,8 +85,8 @@ compctl -x 's[-]' -s " f o r h version nice ff v nexcl noH14 alldih remdih nopa compctl -x 's[-]' -s " f s h version nice b e dt" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' -- g_xrama compctl -x 's[-]' -s " f eig s n tar ori o h version nice xvg mon linfix linacc radfix radacc radcon flood outfrq slope linstep accdir radstep maxedsteps eqsteps deltaF0 deltaF tau Eflnull T alpha restrain hessian harmonic constF" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-f]' -g '*.(trr|cpt|trj)(|.gz|.Z) *(/)' - 'c[-1,-eig]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa|gro|g96|pdb|brk|ent)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-tar]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz|tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-ori]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz|tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.edi(|.gz|.Z) *(/)' -- make_edi compctl -x 's[-]' -s " f n o h version nice natoms" - 'c[-1,-f]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz|tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.ndx(|.gz|.Z) *(/)' -- make_ndx -compctl -x 's[-]' -s " s o x cpi cpo c e g dhdl field table tabletf tablep tableb rerun tpi tpid ei eo j jo ffout devout runav px pf ro ra rs rt mtx dn multidir membed mp mn h version nice deffnm xvg pd dd ddorder npme nt ntmpi ntomp ntomp_pme nopin pinht pinoffset gpu_id noddcheck rdd rcon dlb dds gcom nb notunepme testverlet v nocompact seppot pforce reprod cpt cpnum noappend nsteps maxh multi replex nex reseed ionize" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-ddorder]' -s " interleave pp_pme cartesian" - 'c[-1,-dlb]' -s " auto no yes" - 'c[-1,-nb]' -s " auto cpu gpu gpu_cpu" - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.(trr|cpt|trj)(|.gz|.Z) *(/)' - 'c[-1,-x]' -g '*.xtc(|.gz|.Z) *(/)' - 'c[-1,-cpi]' -g '*.cpt(|.gz|.Z) *(/)' - 'c[-1,-cpo]' -g '*.cpt(|.gz|.Z) *(/)' - 'c[-1,-c]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz)(|.gz|.Z) *(/)' - 'c[-1,-e]' -g '*.edr(|.gz|.Z) *(/)' - 'c[-1,-g]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-dhdl]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-field]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-table]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tabletf]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tablep]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tableb]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-rerun]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-tpi]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tpid]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ei]' -g '*.edi(|.gz|.Z) *(/)' - 'c[-1,-eo]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-j]' -g '*.gct(|.gz|.Z) *(/)' - 'c[-1,-jo]' -g '*.gct(|.gz|.Z) *(/)' - 'c[-1,-ffout]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-devout]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-runav]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-px]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-pf]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ro]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ra]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-rs]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-rt]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-mtx]' -g '*.mtx(|.gz|.Z) *(/)' - 'c[-1,-dn]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-multidir]' -g '*.rundir(|.gz|.Z) *(/)' - 'c[-1,-membed]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-mp]' -g '*.top(|.gz|.Z) *(/)' - 'c[-1,-mn]' -g '*.ndx(|.gz|.Z) *(/)' -- mdrun -compctl -x 's[-]' -s " s o x cpi cpo c e g dhdl field table tabletf tablep tableb rerun tpi tpid ei eo j jo ffout devout runav px pf ro ra rs rt mtx dn multidir membed mp mn h version nice deffnm xvg pd dd ddorder npme nt ntmpi ntomp ntomp_pme nopin pinht pinoffset gpu_id noddcheck rdd rcon dlb dds gcom nb notunepme testverlet v nocompact seppot pforce reprod cpt cpnum noappend nsteps maxh multi replex nex reseed ionize" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-ddorder]' -s " interleave pp_pme cartesian" - 'c[-1,-dlb]' -s " auto no yes" - 'c[-1,-nb]' -s " auto cpu gpu gpu_cpu" - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.(trr|cpt|trj)(|.gz|.Z) *(/)' - 'c[-1,-x]' -g '*.xtc(|.gz|.Z) *(/)' - 'c[-1,-cpi]' -g '*.cpt(|.gz|.Z) *(/)' - 'c[-1,-cpo]' -g '*.cpt(|.gz|.Z) *(/)' - 'c[-1,-c]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz)(|.gz|.Z) *(/)' - 'c[-1,-e]' -g '*.edr(|.gz|.Z) *(/)' - 'c[-1,-g]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-dhdl]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-field]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-table]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tabletf]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tablep]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tableb]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-rerun]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-tpi]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tpid]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ei]' -g '*.edi(|.gz|.Z) *(/)' - 'c[-1,-eo]' -g '*.edo(|.gz|.Z) *(/)' - 'c[-1,-j]' -g '*.gct(|.gz|.Z) *(/)' - 'c[-1,-jo]' -g '*.gct(|.gz|.Z) *(/)' - 'c[-1,-ffout]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-devout]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-runav]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-px]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-pf]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ro]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ra]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-rs]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-rt]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-mtx]' -g '*.mtx(|.gz|.Z) *(/)' - 'c[-1,-dn]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-multidir]' -g '*.rundir(|.gz|.Z) *(/)' - 'c[-1,-membed]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-mp]' -g '*.top(|.gz|.Z) *(/)' - 'c[-1,-mn]' -g '*.ndx(|.gz|.Z) *(/)' -- mdrun_mpi +compctl -x 's[-]' -s " s o x cpi cpo c e g dhdl field table tabletf tablep tableb rerun tpi tpid ei eo j jo ffout devout runav px pf ro ra rs rt mtx dn multidir membed mp mn h version nice deffnm xvg pd dd ddorder npme nt ntmpi ntomp ntomp_pme pin pinoffset pinstride gpu_id noddcheck rdd rcon dlb dds gcom nb notunepme testverlet v nocompact seppot pforce reprod cpt cpnum noappend nsteps maxh multi replex nex reseed ionize" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-ddorder]' -s " interleave pp_pme cartesian" - 'c[-1,-pin]' -s " auto on off" - 'c[-1,-dlb]' -s " auto no yes" - 'c[-1,-nb]' -s " auto cpu gpu gpu_cpu" - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.(trr|cpt|trj)(|.gz|.Z) *(/)' - 'c[-1,-x]' -g '*.xtc(|.gz|.Z) *(/)' - 'c[-1,-cpi]' -g '*.cpt(|.gz|.Z) *(/)' - 'c[-1,-cpo]' -g '*.cpt(|.gz|.Z) *(/)' - 'c[-1,-c]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz)(|.gz|.Z) *(/)' - 'c[-1,-e]' -g '*.edr(|.gz|.Z) *(/)' - 'c[-1,-g]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-dhdl]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-field]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-table]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tabletf]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tablep]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tableb]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-rerun]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-tpi]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tpid]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ei]' -g '*.edi(|.gz|.Z) *(/)' - 'c[-1,-eo]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-j]' -g '*.gct(|.gz|.Z) *(/)' - 'c[-1,-jo]' -g '*.gct(|.gz|.Z) *(/)' - 'c[-1,-ffout]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-devout]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-runav]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-px]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-pf]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ro]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ra]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-rs]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-rt]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-mtx]' -g '*.mtx(|.gz|.Z) *(/)' - 'c[-1,-dn]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-multidir]' -g '*.(|.gz|.Z) *(/)' - 'c[-1,-membed]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-mp]' -g '*.top(|.gz|.Z) *(/)' - 'c[-1,-mn]' -g '*.ndx(|.gz|.Z) *(/)' -- mdrun +compctl -x 's[-]' -s " s o x cpi cpo c e g dhdl field table tabletf tablep tableb rerun tpi tpid ei eo j jo ffout devout runav px pf ro ra rs rt mtx dn multidir membed mp mn h version nice deffnm xvg pd dd ddorder npme nt ntmpi ntomp ntomp_pme pin pinoffset pinstride gpu_id noddcheck rdd rcon dlb dds gcom nb notunepme testverlet v nocompact seppot pforce reprod cpt cpnum noappend nsteps maxh multi replex nex reseed ionize" - 'c[-1,-xvg]' -s " xmgrace xmgr none" - 'c[-1,-ddorder]' -s " interleave pp_pme cartesian" - 'c[-1,-pin]' -s " auto on off" - 'c[-1,-dlb]' -s " auto no yes" - 'c[-1,-nb]' -s " auto cpu gpu gpu_cpu" - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.(trr|cpt|trj)(|.gz|.Z) *(/)' - 'c[-1,-x]' -g '*.xtc(|.gz|.Z) *(/)' - 'c[-1,-cpi]' -g '*.cpt(|.gz|.Z) *(/)' - 'c[-1,-cpo]' -g '*.cpt(|.gz|.Z) *(/)' - 'c[-1,-c]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz)(|.gz|.Z) *(/)' - 'c[-1,-e]' -g '*.edr(|.gz|.Z) *(/)' - 'c[-1,-g]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-dhdl]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-field]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-table]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tabletf]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tablep]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tableb]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-rerun]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-tpi]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-tpid]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ei]' -g '*.edi(|.gz|.Z) *(/)' - 'c[-1,-eo]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-j]' -g '*.gct(|.gz|.Z) *(/)' - 'c[-1,-jo]' -g '*.gct(|.gz|.Z) *(/)' - 'c[-1,-ffout]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-devout]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-runav]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-px]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-pf]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ro]' -g '*.xvg(|.gz|.Z) *(/)' - 'c[-1,-ra]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-rs]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-rt]' -g '*.log(|.gz|.Z) *(/)' - 'c[-1,-mtx]' -g '*.mtx(|.gz|.Z) *(/)' - 'c[-1,-dn]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-multidir]' -g '*.line_buf(|.gz|.Z) *(/)' - 'c[-1,-membed]' -g '*.dat(|.gz|.Z) *(/)' - 'c[-1,-mp]' -g '*.top(|.gz|.Z) *(/)' - 'c[-1,-mn]' -g '*.ndx(|.gz|.Z) *(/)' -- mdrun_mpi compctl -x 's[-]' -s " s n h version nice type nohyd hq" - 'c[-1,-type]' -s " angle dihedral improper ryckaert-bellemans" - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' -- mk_angndx compctl -x 's[-]' -s " f s n h version nice b e dt" - 'c[-1,-f]' -g '*.(xtc|trr|cpt|trj|gro|g96|pdb|g87)(|.gz|.Z) *(/)' - 'c[-1,-s]' -g '*.(tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' -- ngmx compctl -x 's[-]' -s " f o p i n q h version nice chainsep merge ff water inter ss ter lys arg asp glu gln his angle dist una ignh missing v posrefc vsite heavyh deuterate nochargegrp nocmap renum rtpres" - 'c[-1,-chainsep]' -s " id_or_ter id_and_ter ter id interactive" - 'c[-1,-merge]' -s " no all interactive" - 'c[-1,-water]' -s " select none spc spce tip3p tip4p tip5p" - 'c[-1,-vsite]' -s " none hydrogens aromatics" - 'c[-1,-f]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz|tpr|tpb|tpa)(|.gz|.Z) *(/)' - 'c[-1,-o]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz)(|.gz|.Z) *(/)' - 'c[-1,-p]' -g '*.top(|.gz|.Z) *(/)' - 'c[-1,-i]' -g '*.itp(|.gz|.Z) *(/)' - 'c[-1,-n]' -g '*.ndx(|.gz|.Z) *(/)' - 'c[-1,-q]' -g '*.(gro|g96|pdb|brk|ent|esp|xyz)(|.gz|.Z) *(/)' -- pdb2gmx