From: Carsten Kutzner <ckutzne@gwdg.de>
Date: Thu, 17 Jan 2013 12:39:35 +0000 (+0100)
Subject: Added note about make_edi and flooding in ED paragraph
X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=commitdiff_plain;h=b933bdb841e750fc61e88fc52b674eb29fdc031c;p=alexxy%2Fgromacs.git

Added note about make_edi and flooding in ED paragraph

Change-Id: I735c75194aeaa76570d211e51665ec89cfc3ef82
---

diff --git a/src/kernel/mdrun.c b/src/kernel/mdrun.c
index 5c6a23b9c3..52f65300ed 100644
--- a/src/kernel/mdrun.c
+++ b/src/kernel/mdrun.c
@@ -243,10 +243,11 @@ int cmain(int argc,char *argv[])
     "forces and energies will be (re)calculated. Neighbor searching will be",
     "performed for every frame, unless [TT]nstlist[tt] is zero",
     "(see the [TT].mdp[tt] file).[PAR]",
-    "ED (essential dynamics) sampling is switched on by using the [TT]-ei[tt]",
-    "flag followed by an [TT].edi[tt] file.",
-    "The [TT].edi[tt] file can be produced using options in the essdyn",
-    "menu of the WHAT IF program. [TT]mdrun[tt] produces a [TT].xvg[tt] output file that",
+    "ED (essential dynamics) sampling and/or additional flooding potentials",
+    "are switched on by using the [TT]-ei[tt] flag followed by an [TT].edi[tt]",
+    "file. The [TT].edi[tt] file can be produced with the [TT]make_edi[tt] tool",
+    "or by using options in the essdyn menu of the WHAT IF program.",
+    "[TT]mdrun[tt] produces a [TT].xvg[tt] output file that",
     "contains projections of positions, velocities and forces onto selected",
     "eigenvectors.[PAR]",
     "When user-defined potential functions have been selected in the",