From: Mark Abraham Date: Tue, 7 May 2013 18:06:59 +0000 (+0200) Subject: Fix extant references to former GPL licensing X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=commitdiff_plain;h=a174d7c5dbac4caf32f0d5296a259b111e7b3881;p=alexxy%2Fgromacs.git Fix extant references to former GPL licensing Some files did not have the copyright header I applied in 2012, so I have re-applied that header as I would have then. Some references remain in src/contrib and share/top/residues.dtd, because I do not know whether they should change. Change-Id: Ia80adc0c55ac1776297754a90cc0f8b5de7eae8f --- diff --git a/COPYING b/COPYING index 43c15989e4..58175ae4b9 100644 --- a/COPYING +++ b/COPYING @@ -1038,7 +1038,7 @@ BLAS does not come with a formal named "license", but a general statement that via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software packages (and has been). We only ask that proper credit be given to the authors." -While the rest of Gromacs is GPL, we think it's only fair to give you the same rights to +While the rest of Gromacs is LGPL, we think it's only fair to give you the same rights to our modified BLAS files as the original netlib versions, so do what you want with them. However, be warned that we have only tested that they to the right thing in the cases used in Gromacs (primarily full & sparse matrix diagonalization), so in most cases it is a much @@ -1062,7 +1062,7 @@ LAPACK does not come with a formal named "license", but a general statement sayi via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software packages (and has been). We only ask that proper credit be given to the authors." -While the rest of Gromacs is GPL, we think it's only fair to give you the same rights to +While the rest of Gromacs is LGPL, we think it's only fair to give you the same rights to our modified LAPACK files as the original netlib versions, so do what you want with them. However, be warned that we have only tested that they to the right thing in the cases used diff --git a/README b/README index 84e5347fa8..b09fdc4b58 100644 --- a/README +++ b/README @@ -17,13 +17,14 @@ out http://www.gromacs.org/Developer_Zone. * * * * * -GROMACS is free software, distributed under the GNU General Public License. -However, scientific software is a little special compared to most other -programs. Both you, we, and all other GROMACS users depend on the quality -of the code, and when we find bugs (every piece of software has them) it -is crucial that we can correct it and say that it was fixed in version X of -the file or package release. For the same reason, it is important that you -can reproduce other people's result from a certain GROMACS version. +GROMACS is free software, distributed under the GNU Lesser General +Public License, version 2.1 However, scientific software is a little +special compared to most other programs. Both you, we, and all other +GROMACS users depend on the quality of the code, and when we find bugs +(every piece of software has them) it is crucial that we can correct +it and say that it was fixed in version X of the file or package +release. For the same reason, it is important that you can reproduce +other people's result from a certain GROMACS version. The easiest way to avoid this kind of problems is to get your modifications included in the main distribution. We'll be happy to consider any decent diff --git a/admin/gromacs-mpi.spec b/admin/gromacs-mpi.spec index dafcb22ba0..2bcb73bd4e 100644 --- a/admin/gromacs-mpi.spec +++ b/admin/gromacs-mpi.spec @@ -9,7 +9,7 @@ Summary: Molecular dynamics package (parallel) Name: gromacs-mpi Version: 4.5 Release: 1 -Copyright: GPL +Copyright: LGPLv2.1 Group: Applications/Science Prefix: /usr/local Buildroot: %{_topdir}/buildroot diff --git a/admin/gromacs.spec b/admin/gromacs.spec index 24681975c3..f1521fb5fb 100644 --- a/admin/gromacs.spec +++ b/admin/gromacs.spec @@ -3,7 +3,7 @@ Version: 4.5 Release: 7%{?dist} Summary: GROMACS binaries Group: Applications/Engineering -License: GPLv2+ +License: LGPLv2.1 URL: http://www.gromacs.org Source0: ftp://ftp.gromacs.org/pub/gromacs/gromacs-%{version}.tar.gz Source1: ftp://ftp.gromacs.org/pub/manual/manual-4.0.pdf diff --git a/cmake/FindFFTW.cmake b/cmake/FindFFTW.cmake index 63957fb19e..78b726c58b 100644 --- a/cmake/FindFFTW.cmake +++ b/cmake/FindFFTW.cmake @@ -45,14 +45,6 @@ # # This file is part of Gromacs Copyright (c) 2012 -# This program is free software; you can redistribute it and/or -# modify it under the terms of the GNU General Public License -# as published by the Free Software Foundation; either version 2 -# of the License, or (at your option) any later version. - -# To help us fund GROMACS development, we humbly ask that you cite -# the research papers on the package. Check out http://www.gromacs.org - list(LENGTH FFTW_FIND_COMPONENTS FFTW_NUM_COMPONENTS_WANTED) if(${FFTW_NUM_COMPONENTS_WANTED} LESS 1) message(FATAL_ERROR "No FFTW component to search given") diff --git a/cmake/FindVMD.cmake b/cmake/FindVMD.cmake index ecf5f23b46..5c0e186d27 100644 --- a/cmake/FindVMD.cmake +++ b/cmake/FindVMD.cmake @@ -35,15 +35,6 @@ # This file is part of Gromacs Copyright (c) 1991-2008 # David van der Spoel, Erik Lindahl, Berk Hess, University of Groningen. -# This program is free software; you can redistribute it and/or -# modify it under the terms of the GNU General Public License -# as published by the Free Software Foundation; either version 2 -# of the License, or (at your option) any later version. - -# To help us fund GROMACS development, we humbly ask that you cite -# the research papers on the package. Check out http://www.gromacs.org - - # The module defines the following variables: # VMD_EXECUTABLE - path to vmd command # GMX_VMD_PLUGIN_PATH - path to vmd plugins diff --git a/include/gmx_system_xdr.h b/include/gmx_system_xdr.h index e08c8db5b3..9ca8823a61 100644 --- a/include/gmx_system_xdr.h +++ b/include/gmx_system_xdr.h @@ -58,7 +58,7 @@ * platforms like Microsoft Windows we have created a private version * of the necessary routines and distribute them with the Gromacs source. * - * Although the rest of Gromacs is GPL, you can copy and use the XDR + * Although the rest of Gromacs is LGPL, you can copy and use the XDR * routines in any way you want as long as you obey Sun's license: * * Sun RPC is a product of Sun Microsystems, Inc. and is provided for diff --git a/share/template/template.c b/share/template/template.c index decd7dad65..69e993ba77 100644 --- a/share/template/template.c +++ b/share/template/template.c @@ -1,32 +1,39 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2009, The GROMACS development team, + * Copyright (c) 2001-2009,2010,2012, The GROMACS development team, * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012,2013, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #include #include diff --git a/share/template/template_doc.c b/share/template/template_doc.c index c7dd970317..3be1cfdd18 100644 --- a/share/template/template_doc.c +++ b/share/template/template_doc.c @@ -1,32 +1,39 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2009, The GROMACS development team, * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012,2013, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * For more info, check our website at http://www.gromacs.org + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ /*! \dir share/template * \brief Template code for writing analysis programs. diff --git a/src/contrib/openmm_wrapper.cpp b/src/contrib/openmm_wrapper.cpp index 07f0ecacce..a0650ed2b1 100644 --- a/src/contrib/openmm_wrapper.cpp +++ b/src/contrib/openmm_wrapper.cpp @@ -9,11 +9,11 @@ * * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. - * Copyright (c) 2001-2010, The GROMACS development team, + * Copyright (c) 2001-2010, 2013, The GROMACS development team, * check out http://www.gromacs.org for more information. * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License + * modify it under the terms of the GNU Lesser General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * diff --git a/src/gmxlib/copyrite.c b/src/gmxlib/copyrite.c index 812ff314e4..3e4eca01b3 100644 --- a/src/gmxlib/copyrite.c +++ b/src/gmxlib/copyrite.c @@ -258,7 +258,7 @@ void CopyRight(FILE *out, const char *szProgram) #define NCR (int)asize(CopyrightText) /* TODO: Is this exception still needed? */ #ifdef GMX_FAHCORE -#define NLICENSE 0 /*FAH has an exception permission from GPL to allow digital signatures in Gromacs*/ +#define NLICENSE 0 /*FAH has an exception permission from LGPL to allow digital signatures in Gromacs*/ #else #define NLICENSE (int)asize(LicenseText) #endif diff --git a/src/gmxlib/gmx_blas/blas_copyright b/src/gmxlib/gmx_blas/blas_copyright index 834bdb4b37..eaa00e1638 100644 --- a/src/gmxlib/gmx_blas/blas_copyright +++ b/src/gmxlib/gmx_blas/blas_copyright @@ -11,7 +11,7 @@ BLAS does not come with a formal named "license", but a general statement that via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software packages (and has been). We only ask that proper credit be given to the authors." -While the rest of Gromacs is GPL, we think it's only fair to give you the same rights to +While the rest of Gromacs is LGPL, we think it's only fair to give you the same rights to our modified BLAS files as the original netlib versions, so do what you want with them. However, be warned that we have only tested that they to the right thing in the cases used in Gromacs (primarily full & sparse matrix diagonalization), so in most cases it is a much diff --git a/src/gmxlib/gmx_lapack/lapack_copyright b/src/gmxlib/gmx_lapack/lapack_copyright index 8e9b0f7500..c4cc48cecf 100644 --- a/src/gmxlib/gmx_lapack/lapack_copyright +++ b/src/gmxlib/gmx_lapack/lapack_copyright @@ -11,7 +11,7 @@ LAPACK does not come with a formal named "license", but a general statement sayi via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software packages (and has been). We only ask that proper credit be given to the authors." -While the rest of Gromacs is GPL, we think it's only fair to give you the same rights to +While the rest of Gromacs is LGPL, we think it's only fair to give you the same rights to our modified LAPACK files as the original netlib versions, so do what you want with them. However, be warned that we have only tested that they to the right thing in the cases used diff --git a/src/gmxlib/gmx_system_xdr.c b/src/gmxlib/gmx_system_xdr.c index a00f248724..132430d309 100644 --- a/src/gmxlib/gmx_system_xdr.c +++ b/src/gmxlib/gmx_system_xdr.c @@ -62,7 +62,7 @@ * platforms like Microsoft Windows we have created a private version * of the necessary routines and distribute them with the Gromacs source. * - * Although the rest of Gromacs is GPL, you can copy and use the XDR + * Although the rest of Gromacs is LGPL, you can copy and use the XDR * routines in any way you want as long as you obey Sun's license: * * Sun RPC is a product of Sun Microsystems, Inc. and is provided for diff --git a/src/ngmx/alert.bm b/src/ngmx/alert.bm index c8fc514a29..1999e231a7 100644 --- a/src/ngmx/alert.bm +++ b/src/ngmx/alert.bm @@ -1,36 +1,39 @@ /* - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.0 - * + * This file is part of the GROMACS molecular simulation package. + * * Copyright (c) 1991-2001 * BIOSON Research Institute, Dept. of Biophysical Chemistry * University of Groningen, The Netherlands - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. - * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. - * + * + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. - * - * Do check out http://www.gromacs.org , or mail us at gromacs@gromacs.org . - * - * And Hey: - * GROup of MAchos and Cynical Suckers + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _alert_bm diff --git a/src/ngmx/ff.bm b/src/ngmx/ff.bm index 890a47fc89..44b8660038 100644 --- a/src/ngmx/ff.bm +++ b/src/ngmx/ff.bm @@ -1,36 +1,39 @@ /* - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.0 - * + * This file is part of the GROMACS molecular simulation package. + * * Copyright (c) 1991-2001 * BIOSON Research Institute, Dept. of Biophysical Chemistry * University of Groningen, The Netherlands - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. - * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. - * + * + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. - * - * Do check out http://www.gromacs.org , or mail us at gromacs@gromacs.org . - * - * And Hey: - * GROup of MAchos and Cynical Suckers + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _ff_bm diff --git a/src/ngmx/gromacs.bm b/src/ngmx/gromacs.bm index 75c9452056..080981ca3b 100644 --- a/src/ngmx/gromacs.bm +++ b/src/ngmx/gromacs.bm @@ -1,36 +1,39 @@ /* - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.0 - * + * This file is part of the GROMACS molecular simulation package. + * * Copyright (c) 1991-2001 * BIOSON Research Institute, Dept. of Biophysical Chemistry * University of Groningen, The Netherlands - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. - * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. - * + * + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. - * - * Do check out http://www.gromacs.org , or mail us at gromacs@gromacs.org . - * - * And Hey: - * GROup of MAchos and Cynical Suckers + * the research papers on the package. Check out http://www.gromacs.org. */ diff --git a/src/ngmx/info.bm b/src/ngmx/info.bm index 29f9d3dd57..9fbc7d74ec 100644 --- a/src/ngmx/info.bm +++ b/src/ngmx/info.bm @@ -1,36 +1,39 @@ /* - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.0 - * + * This file is part of the GROMACS molecular simulation package. + * * Copyright (c) 1991-2001 * BIOSON Research Institute, Dept. of Biophysical Chemistry * University of Groningen, The Netherlands - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. - * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. - * + * + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. - * - * Do check out http://www.gromacs.org , or mail us at gromacs@gromacs.org . - * - * And Hey: - * GROup of MAchos and Cynical Suckers + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _info_bm diff --git a/src/ngmx/play.bm b/src/ngmx/play.bm index 2ec81bdf19..a34bc3ced9 100644 --- a/src/ngmx/play.bm +++ b/src/ngmx/play.bm @@ -1,36 +1,39 @@ /* - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.0 - * + * This file is part of the GROMACS molecular simulation package. + * * Copyright (c) 1991-2001 * BIOSON Research Institute, Dept. of Biophysical Chemistry * University of Groningen, The Netherlands - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. - * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. - * + * + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. - * - * Do check out http://www.gromacs.org , or mail us at gromacs@gromacs.org . - * - * And Hey: - * GROup of MAchos and Cynical Suckers + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _play_bm diff --git a/src/ngmx/rama.bm b/src/ngmx/rama.bm index d17fc4ca8a..eca879327d 100644 --- a/src/ngmx/rama.bm +++ b/src/ngmx/rama.bm @@ -1,36 +1,39 @@ /* - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.0 - * + * This file is part of the GROMACS molecular simulation package. + * * Copyright (c) 1991-2001 * BIOSON Research Institute, Dept. of Biophysical Chemistry * University of Groningen, The Netherlands - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. - * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. - * + * + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. - * - * Do check out http://www.gromacs.org , or mail us at gromacs@gromacs.org . - * - * And Hey: - * GROup of MAchos and Cynical Suckers + * the research papers on the package. Check out http://www.gromacs.org. */ #define rama_width 48 diff --git a/src/ngmx/rewind.bm b/src/ngmx/rewind.bm index 6dae470646..e25a183437 100644 --- a/src/ngmx/rewind.bm +++ b/src/ngmx/rewind.bm @@ -1,36 +1,39 @@ /* - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.0 - * + * This file is part of the GROMACS molecular simulation package. + * * Copyright (c) 1991-2001 * BIOSON Research Institute, Dept. of Biophysical Chemistry * University of Groningen, The Netherlands - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. - * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. - * + * + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. - * - * Do check out http://www.gromacs.org , or mail us at gromacs@gromacs.org . - * - * And Hey: - * GROup of MAchos and Cynical Suckers + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _rewind_bm #define _rewind_bm diff --git a/src/ngmx/stop.bm b/src/ngmx/stop.bm index a89ee0d15c..a51d36cd1e 100644 --- a/src/ngmx/stop.bm +++ b/src/ngmx/stop.bm @@ -1,36 +1,39 @@ /* - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.0 - * + * This file is part of the GROMACS molecular simulation package. + * * Copyright (c) 1991-2001 * BIOSON Research Institute, Dept. of Biophysical Chemistry * University of Groningen, The Netherlands - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. - * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. - * + * + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. - * - * Do check out http://www.gromacs.org , or mail us at gromacs@gromacs.org . - * - * And Hey: - * GROup of MAchos and Cynical Suckers + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _stop_bm diff --git a/src/ngmx/stop_ani.bm b/src/ngmx/stop_ani.bm index 03a0ee3d0b..21adc15518 100644 --- a/src/ngmx/stop_ani.bm +++ b/src/ngmx/stop_ani.bm @@ -1,36 +1,39 @@ /* - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.0 - * + * This file is part of the GROMACS molecular simulation package. + * * Copyright (c) 1991-2001 * BIOSON Research Institute, Dept. of Biophysical Chemistry * University of Groningen, The Netherlands - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. - * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. - * + * + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. + * + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + * + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. + * * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. - * - * Do check out http://www.gromacs.org , or mail us at gromacs@gromacs.org . - * - * And Hey: - * GROup of MAchos and Cynical Suckers + * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef _stop_ani_bm diff --git a/src/tools/gmx_anadock.c b/src/tools/gmx_anadock.c index 955412bc3d..c21c10748f 100644 --- a/src/tools/gmx_anadock.c +++ b/src/tools/gmx_anadock.c @@ -1,36 +1,39 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team, * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/tools/gmx_do_dssp.c b/src/tools/gmx_do_dssp.c index b7f761d34a..8fde2e00cb 100644 --- a/src/tools/gmx_do_dssp.c +++ b/src/tools/gmx_do_dssp.c @@ -1,37 +1,39 @@ -/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*- +/* + * This file is part of the GROMACS molecular simulation package. * - * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team, * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/tools/gmx_make_edi.c b/src/tools/gmx_make_edi.c index 0a997a8336..dc45d44530 100644 --- a/src/tools/gmx_make_edi.c +++ b/src/tools/gmx_make_edi.c @@ -1,35 +1,40 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * - * The make_edi program was generously contributed by Oliver Lange, based - * on the code from g_anaeig. You can reach him as olange@gwdg.de. - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Gromacs Runs One Microsecond At Cannonball Speeds + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. + */ +/* The make_edi program was generously contributed by Oliver Lange, based + * on the code from g_anaeig. You can reach him as olange@gwdg.de. He + * probably also holds copyright to the following code. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/tools/gmx_make_ndx.c b/src/tools/gmx_make_ndx.c index e67344a792..6a61a73b36 100644 --- a/src/tools/gmx_make_ndx.c +++ b/src/tools/gmx_make_ndx.c @@ -1,36 +1,39 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team, * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/tools/gmx_mk_angndx.c b/src/tools/gmx_mk_angndx.c index 886b375724..2957848618 100644 --- a/src/tools/gmx_mk_angndx.c +++ b/src/tools/gmx_mk_angndx.c @@ -1,36 +1,39 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team, * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/tools/gmx_sigeps.c b/src/tools/gmx_sigeps.c index 9a871fb6c1..2a8db0871c 100644 --- a/src/tools/gmx_sigeps.c +++ b/src/tools/gmx_sigeps.c @@ -1,36 +1,39 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team, * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Good gRace! Old Maple Actually Chews Slate + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include diff --git a/src/tools/make_edi.c b/src/tools/make_edi.c index 26ce46528a..9764a02cb4 100644 --- a/src/tools/make_edi.c +++ b/src/tools/make_edi.c @@ -1,36 +1,39 @@ /* + * This file is part of the GROMACS molecular simulation package. * - * This source code is part of - * - * G R O M A C S - * - * GROningen MAchine for Chemical Simulations - * - * VERSION 3.2.0 - * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team, * check out http://www.gromacs.org for more information. - - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 + * Copyright (c) 2012, by the GROMACS development team, led by + * David van der Spoel, Berk Hess, Erik Lindahl, and including many + * others, as listed in the AUTHORS file in the top-level source + * directory and at http://www.gromacs.org. + * + * GROMACS is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * - * If you want to redistribute modifications, please consider that - * scientific software is very special. Version control is crucial - - * bugs must be traceable. We will be happy to consider code for - * inclusion in the official distribution, but derived work must not - * be called official GROMACS. Details are found in the README & COPYING - * files - if they are missing, get the official version at www.gromacs.org. + * GROMACS is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Lesser General Public License for more details. * - * To help us fund GROMACS development, we humbly ask that you cite - * the papers on the package - you can find them in the top README file. + * You should have received a copy of the GNU Lesser General Public + * License along with GROMACS; if not, see + * http://www.gnu.org/licenses, or write to the Free Software Foundation, + * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * - * For more info, check our website at http://www.gromacs.org + * If you want to redistribute modifications to GROMACS, please + * consider that scientific software is very special. Version + * control is crucial - bugs must be traceable. We will be happy to + * consider code for inclusion in the official distribution, but + * derived work must not be called official GROMACS. Details are found + * in the README & COPYING files - if they are missing, get the + * official version at http://www.gromacs.org. * - * And Hey: - * Green Red Orange Magenta Azure Cyan Skyblue + * To help us fund GROMACS development, we humbly ask that you cite + * the research papers on the package. Check out http://www.gromacs.org. */ #ifdef HAVE_CONFIG_H #include