From: Justin Lemkul <jalemkul@vt.edu>
Date: Sat, 5 Jan 2013 23:09:27 +0000 (-0500)
Subject: Removed reference to nonexistent file in g_helix.
X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=commitdiff_plain;h=8c1a4e3adcfddafc10b89abd5ace09438989c461;p=alexxy%2Fgromacs.git

Removed reference to nonexistent file in g_helix.

For many years, g_helix has referred to a file called n-ahx.xvg, but
no released version of Gromacs has ever produced it. Being that its contents
are largely reproduced by do_dssp, there is no need to introduce this
functionality and thus the easiest solution is to remove the reference
to this file.

Fixes #1103.

Change-Id: I2b87eed44d9d4c174d3772a39abf24827f63202d
---

diff --git a/src/tools/gmx_helix.c b/src/tools/gmx_helix.c
index e1165e29b3..f813d8fc8d 100644
--- a/src/tools/gmx_helix.c
+++ b/src/tools/gmx_helix.c
@@ -118,14 +118,12 @@ int gmx_helix(int argc,char *argv[])
     "of the", 
     "helix in nm. This is simply the average rise (see above) times the",  
     "number of helical residues (see below).[BR]",
-    "[BB]5.[bb] Number of helical residues (file [TT]n-ahx.xvg[tt]). The title says",
-    "it all.[BR]",
-    "[BB]6.[bb] Helix dipole, backbone only (file [TT]dip-ahx.xvg[tt]).[BR]",
-    "[BB]7.[bb] RMS deviation from ideal helix, calculated for the C[GRK]alpha[grk]",
+    "[BB]5.[bb] Helix dipole, backbone only (file [TT]dip-ahx.xvg[tt]).[BR]",
+    "[BB]6.[bb] RMS deviation from ideal helix, calculated for the C[GRK]alpha[grk]",
     "atoms only (file [TT]rms-ahx.xvg[tt]).[BR]",
-    "[BB]8.[bb] Average C[GRK]alpha[grk] - C[GRK]alpha[grk] dihedral angle (file [TT]phi-ahx.xvg[tt]).[BR]",
-    "[BB]9.[bb] Average [GRK]phi[grk] and [GRK]psi[grk] angles (file [TT]phipsi.xvg[tt]).[BR]",
-    "[BB]10.[bb] Ellipticity at 222 nm according to Hirst and Brooks.",
+    "[BB]7.[bb] Average C[GRK]alpha[grk] - C[GRK]alpha[grk] dihedral angle (file [TT]phi-ahx.xvg[tt]).[BR]",
+    "[BB]8.[bb] Average [GRK]phi[grk] and [GRK]psi[grk] angles (file [TT]phipsi.xvg[tt]).[BR]",
+    "[BB]9.[bb] Ellipticity at 222 nm according to Hirst and Brooks.",
     "[PAR]"
   };
   static const char *ppp[efhNR+2] = {