From: Justin Lemkul <jalemkul@vt.edu>
Date: Sat, 26 Feb 2011 13:29:23 +0000 (-0500)
Subject: Fixed some typos in mdp_opt.html
X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=commitdiff_plain;h=8983517cd4e7df411b7062b72bc1d65f1cd805de;p=alexxy%2Fgromacs.git

Fixed some typos in mdp_opt.html
---

diff --git a/share/html/online/mdp_opt.html b/share/html/online/mdp_opt.html
index 4d261bc1ae..dc451e7a0b 100644
--- a/share/html/online/mdp_opt.html
+++ b/share/html/online/mdp_opt.html
@@ -1370,7 +1370,7 @@ for all restraints and the molecular order tensor to the energy file
 <dd>Only use topology A.</dd>
 <dt><b>yes</b></dt>
 <dd>Interpolate between topology A (lambda=0) to topology B (lambda=1)
-and write the derivative of the Hamiltonian with respect to lambda (as specified with <b>dhdl_derivatives</b>), or the Hamiltonian differences w.r.t. other lambda valies (as specified with <b>foreign_lambda</b>) to
+and write the derivative of the Hamiltonian with respect to lambda (as specified with <b>dhdl_derivatives</b>), or the Hamiltonian differences with respec to other lambda values (as specified with <b>foreign_lambda</b>) to
 the energy file and/or to <tt>dhdl.xvg</tt>, where they can be processed by, for example <tt>g_bar</tt>.
 The potentials, bond-lengths and angles are interpolated linearly as
 described in the manual. When <b>sc_alpha</b> is larger than zero, soft-core
@@ -1386,7 +1386,7 @@ be determined and written to dhdl.xvg every <b>nstdhdl</b> steps.
 Free energy differences between different lambda values can then
 be determined with <tt>g_bar</tt>.</dd>
 <dt><b>dhdl_derivatives: (yes)</b></dt>
-<dd>If yes (the default), the derivatives of the Hamiltonian w.r.t. lambda at each <b>nstdhdl</b> step are written out. These values are needed for interpolation of linear energy differences with <tt>g_bar</tt> (although the same can also be achieved with the right <b>foreign lambda</b> setting, that may not be as flexible), or with thermodynamic integration</dd>
+<dd>If yes (the default), the derivatives of the Hamiltonian with respect to lambda at each <b>nstdhdl</b> step are written out. These values are needed for interpolation of linear energy differences with <tt>g_bar</tt> (although the same can also be achieved with the right <b>foreign lambda</b> setting, that may not be as flexible), or with thermodynamic integration</dd>
 <dt><b>sc_alpha: (0)</b></dt>
 <dd>the soft-core parameter, a value of 0 results in linear interpolation of
 the LJ and Coulomb interactions</dd>