From: M. Eric Irrgang <ericirrgang@gmail.com>
Date: Mon, 16 Aug 2021 10:08:01 +0000 (+0300)
Subject: Add `breathe` package to CI Python venvs.
X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=commitdiff_plain;h=3c08f7846877252501f74f06e7ba8ceb90133a95;p=alexxy%2Fgromacs.git

Add `breathe` package to CI Python venvs.

It seems likely that at least one of the projects documented in the
GROMACS manual will want to incorporate documentation from C++ headers
(Doxygen) into the Sphinx pages. We can update the container build
script in advance so that the package will be available for
experimentation and testing after the next container rebuild.

See also #2698
---

diff --git a/admin/containers/scripted_gmx_docker_builds.py b/admin/containers/scripted_gmx_docker_builds.py
index d50ab66cde..f0d2f3cc2b 100755
--- a/admin/containers/scripted_gmx_docker_builds.py
+++ b/admin/containers/scripted_gmx_docker_builds.py
@@ -495,6 +495,7 @@ def prepare_venv(version: StrictVersion) -> typing.Sequence[str]:
     # WARNING: Please keep this list synchronized with python_packaging/requirements-test.txt
     # TODO: Get requirements.txt from an input argument.
     commands.append(f"""{venv_path}/bin/python -m pip install --upgrade \
+            'breathe' \
             'cmake>=3.16.3' \
             'flake8>=3.7.7' \
             'gcovr>=4.2' \