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diff --git a/src/dssp.cpp b/src/dssp.cpp
index b369a793cf4cab3faf9a587ab94ee367791e9b58..67a928f1c2d98bc7764c3f01fb93f58508697483 100644 (file)
--- a/src/dssp.cpp
+++ b/src/dssp.cpp
@@ -87,7 +87,6 @@ Dssp::Dssp() {}
 
 void Dssp::initOptions(IOptionsContainer* options, TrajectoryAnalysisSettings* settings)
 {
-    std::cout << "options started" << std::endl;
    static const char* const desc[] = {
        "[THISMODULE] todo",
    };
@@ -107,14 +106,10 @@ void Dssp::initOptions(IOptionsContainer* options, TrajectoryAnalysisSettings* s
    options->addOption(
                BooleanOption("v").store(&initParams.verbose).defaultValue(false).description(">:("));
    settings->setHelpText(desc);
-
-   std::cout << "options ended" << std::endl;
 }
 
 
 void Dssp::optionsFinished(TrajectoryAnalysisSettings* /* settings */) {
-
-    std::cout << "optinsFinished ended" << std::endl;
 }
 
 

diff --git a/src/dssptools.cpp b/src/dssptools.cpp
index 9f8eb622361cd93b71efd2e47144ef77b558e8a0..cab5894de1f4b837b7f909075f792442ddd59332 100644 (file)
--- a/src/dssptools.cpp
+++ b/src/dssptools.cpp
@@ -639,9 +639,10 @@ float DsspTool::CalculateAtomicDistances(const int &A, const int &B, const t_trx
 void DsspTool::initAnalysis(/*const TrajectoryAnalysisSettings &settings,*/const TopologyInformation& top, const initParameters &initParamz)
 {
 
-    std::cout << "Init started" << std::endl;
+   std::cout << "Init started" << std::endl;
    initParams = initParamz;
 
+   std::cout << "1" << std::endl;
    ResInfo _backboneAtoms;
    std::size_t                 i{ 0 };
    int resicompare{ top.atoms()->atom[static_cast<std::size_t>(*(initParams.sel_.atomIndices().begin()))].resind };