if( SecondaryStructuresStatusMap[i].getStatus(secondaryStructureTypes::Break) && SecondaryStructuresStatusMap[i + 1].getStatus(secondaryStructureTypes::Break) ){
if(SecondaryStructuresStatusMap[i].isBreakPartnerWith(&SecondaryStructuresStatusMap[i + 1]) && SecondaryStructuresStatusMap[i + 1].isBreakPartnerWith(&SecondaryStructuresStatusMap[i]) ){
std::cout << "Break between " << i + 1 << " and " << i + 2 << std::endl;
+ std::cout << SecondaryStructuresStringLine << std::endl;
+ std::cout << secondaryStructureTypeNames[secondaryStructureTypes::Break] << " inserts in " << i + linefactor << std::endl;
+
SecondaryStructuresStringLine.insert(SecondaryStructuresStringLine.begin() + i + linefactor, secondaryStructureTypeNames[secondaryStructureTypes::Break]);
}
}