Updated the manual pages due to new flags from berk.

diff --git a/man/man1/do_dssp.1 b/man/man1/do_dssp.1
index c2383ba6a454ce107cd04f2e70ccd9feab66c212..961420a7270726c5f478b9632ce9609b9d884627 100644 (file)
--- a/man/man1/do_dssp.1
+++ b/man/man1/do_dssp.1
@@ -1,4 +1,4 @@
-.TH do_dssp 1 "Thu 5 Jul 2001"
+.TH do_dssp 1 "Mon 23 Jul 2001"
 .SH NAME
 do_dssp
 .B VERSION 3.0

diff --git a/man/man1/editconf.1 b/man/man1/editconf.1
index 2814fba0a4fa6fd817bb9a7b62302bb76bd73013..83262bcfe0ea1bc5457dad4b64563af57e508bc2 100644 (file)
--- a/man/man1/editconf.1
+++ b/man/man1/editconf.1
@@ -1,4 +1,4 @@
-.TH editconf 1 "Thu 5 Jul 2001"
+.TH editconf 1 "Mon 23 Jul 2001"
 .SH NAME
 editconf
 .B VERSION 3.0

diff --git a/man/man1/eneconv.1 b/man/man1/eneconv.1
index c3a83a4ddfb6adf08b4742860ac7f769fe325703..76558906ba866d6508ca3ca71414f3a102db3da5 100644 (file)
--- a/man/man1/eneconv.1
+++ b/man/man1/eneconv.1
@@ -1,4 +1,4 @@
-.TH eneconv 1 "Thu 5 Jul 2001"
+.TH eneconv 1 "Mon 23 Jul 2001"
 .SH NAME
 eneconv
 .B VERSION 3.0

diff --git a/man/man1/g_anaeig.1 b/man/man1/g_anaeig.1
index a6941b3c352e876a5c0383d412313d990213c241..f5bc7079c1f62aabd06265d7462bb9452cbc9d87 100644 (file)
--- a/man/man1/g_anaeig.1
+++ b/man/man1/g_anaeig.1
@@ -1,4 +1,4 @@
-.TH g_anaeig 1 "Thu 5 Jul 2001"
+.TH g_anaeig 1 "Mon 23 Jul 2001"
 .SH NAME
 g_anaeig
 .B VERSION 3.0

diff --git a/man/man1/g_analyze.1 b/man/man1/g_analyze.1
index 06221b8b6d82e4a1cb7f08f54009ab5ad6b3e495..b443733035f433a0d7474516913204774b5a0f48 100644 (file)
--- a/man/man1/g_analyze.1
+++ b/man/man1/g_analyze.1
@@ -1,4 +1,4 @@
-.TH g_analyze 1 "Thu 5 Jul 2001"
+.TH g_analyze 1 "Mon 23 Jul 2001"
 .SH NAME
 g_analyze
 .B VERSION 3.0

diff --git a/man/man1/g_angle.1 b/man/man1/g_angle.1
index 131cdc3f8d2f6120098f085d80cd367cd9f3dccc..4adc43de34cf1d9a04f75e8fe4cc4c21e8c45491 100644 (file)
--- a/man/man1/g_angle.1
+++ b/man/man1/g_angle.1
@@ -1,4 +1,4 @@
-.TH g_angle 1 "Thu 5 Jul 2001"
+.TH g_angle 1 "Mon 23 Jul 2001"
 .SH NAME
 g_angle
 .B VERSION 3.0

diff --git a/man/man1/g_bond.1 b/man/man1/g_bond.1
index a14fa56b67ee1eb035dba1ae360d6f1038093b51..442c2da3376950ee9de79a856b47478127366fcb 100644 (file)
--- a/man/man1/g_bond.1
+++ b/man/man1/g_bond.1
@@ -1,4 +1,4 @@
-.TH g_bond 1 "Thu 5 Jul 2001"
+.TH g_bond 1 "Mon 23 Jul 2001"
 .SH NAME
 g_bond
 .B VERSION 3.0

diff --git a/man/man1/g_bundle.1 b/man/man1/g_bundle.1
index af14e68e4c8b7153eb2d993177682e4b49ad157c..aaff86aa33576f97d568c0f27fbb53decbee1bd3 100644 (file)
--- a/man/man1/g_bundle.1
+++ b/man/man1/g_bundle.1
@@ -1,4 +1,4 @@
-.TH g_bundle 1 "Thu 5 Jul 2001"
+.TH g_bundle 1 "Mon 23 Jul 2001"
 .SH NAME
 g_bundle
 .B VERSION 3.0
@@ -9,9 +9,13 @@ g_bundle
 .BI "-n" " index.ndx "
 .BI "-ol" " bun_len.xvg "
 .BI "-od" " bun_dist.xvg "
+.BI "-oz" " bun_z.xvg "
 .BI "-ot" " bun_tilt.xvg "
 .BI "-otr" " bun_tiltr.xvg "
 .BI "-otl" " bun_tiltl.xvg "
+.BI "-ok" " bun_kink.xvg "
+.BI "-okr" " bun_kinkr.xvg "
+.BI "-okl" " bun_kinkl.xvg "
 .BI "-oa" " axes.pdb "
 .BI "-[no]h" ""
 .BI "-[no]X" ""
@@ -19,6 +23,7 @@ g_bundle
 .BI "-b" " time "
 .BI "-e" " time "
 .BI "-dt" " time "
+.BI "-tu" " enum "
 .BI "-na" " int "
 .BI "-[no]z" ""
 .SH DESCRIPTION
@@ -26,21 +31,41 @@ g_bundle analyzes bundles of axes. The axes can be for instance
 helix axes. The program reads two index groups and divides both
 of them in 
 .B -na
-parts. The groups define the tops and
-bottoms of the axes. Several quantities are written to file:
-the axis length, the distance from the axis centers to the average
-center of all axes, the total tilt, the radial tilt and the lateral
-tilt with respect to the average axis.
+parts. The centers of mass of these parts
+define the tops and bottoms of the axes.
+Several quantities are written to file:
+the axis length, the distance and the z-shift of the axis mid-points
+with respect to the average center of all axes, the total tilt,
+the radial tilt and the lateral tilt with respect to the average axis.
+
+
+
+With options 
+.B -ok
+, 
+.B -okr
+and 
+.B -okl
+the total,
+radial and lateral kinks of the axes are plotted. An extra index
+group of kink atoms is required, which is also divided into 
+.B -na
+
+parts. The kink angle is defined as the angle between the kink-top and
+the bottom-kink vectors.
 
 
 
 With option 
 .B -oa
-the top, mid and bottom points of each axis
+the top, mid (or kink when 
+.B -ok
+is set)
+and bottom points of each axis
 are written to a pdb file each frame. The residue numbers correspond
 to the axis numbers. When viewing this file with 
 .B rasmol
-use the
+, use the
 command line option 
 .B -nmrpdb
 , and type 
@@ -68,6 +93,10 @@ display the reference axis.
 .B Output
  xvgr/xmgr file 
 
+.BI "-oz" " bun_z.xvg" 
+.B Output
+ xvgr/xmgr file 
+
 .BI "-ot" " bun_tilt.xvg" 
 .B Output
  xvgr/xmgr file 
@@ -80,6 +109,18 @@ display the reference axis.
 .B Output
  xvgr/xmgr file 
 
+.BI "-ok" " bun_kink.xvg" 
+.B Output, Opt.
+ xvgr/xmgr file 
+
+.BI "-okr" " bun_kinkr.xvg" 
+.B Output, Opt.
+ xvgr/xmgr file 
+
+.BI "-okl" " bun_kinkl.xvg" 
+.B Output, Opt.
+ xvgr/xmgr file 
+
 .BI "-oa" " axes.pdb" 
 .B Output, Opt.
  Protein data bank file 
@@ -103,6 +144,25 @@ display the reference axis.
 .BI "-dt"  " time" "     -1" 
  Only use frame when t MOD dt = first time (ps)
 
+.BI "-tu"  " enum" " ps" 
+ Time unit: 
+.B ps
+, 
+.B fs
+, 
+.B ns
+, 
+.B us
+, 
+.B ms
+, 
+.B s
+, 
+.B m
+or 
+.B h
+
+
 .BI "-na"  " int" " 0" 
  Number of axes
 

diff --git a/man/man1/g_chi.1 b/man/man1/g_chi.1
index 6d26a32c449f091e74eddb13b65c12a421547ad7..e6dd7ee516ad15ec77a8efd01cc44a985a33e6cb 100644 (file)
--- a/man/man1/g_chi.1
+++ b/man/man1/g_chi.1
@@ -1,4 +1,4 @@
-.TH g_chi 1 "Thu 5 Jul 2001"
+.TH g_chi 1 "Mon 23 Jul 2001"
 .SH NAME
 g_chi
 .B VERSION 3.0

diff --git a/man/man1/g_cluster.1 b/man/man1/g_cluster.1
index 76e792448bdb154708b05576fa760f0e71c9c037..d4dc0d7e48b455503d91ff7c8131c18815d6bd9c 100644 (file)
--- a/man/man1/g_cluster.1
+++ b/man/man1/g_cluster.1
@@ -1,4 +1,4 @@
-.TH g_cluster 1 "Thu 5 Jul 2001"
+.TH g_cluster 1 "Mon 23 Jul 2001"
 .SH NAME
 g_cluster
 .B VERSION 3.0

diff --git a/man/man1/g_confrms.1 b/man/man1/g_confrms.1
index 42c30a78f4e13b34c07c6227742b646ff9c5f075..44c71fd103d61b7092f99e76facca432d6fcdea4 100644 (file)
--- a/man/man1/g_confrms.1
+++ b/man/man1/g_confrms.1
@@ -1,4 +1,4 @@
-.TH g_confrms 1 "Thu 5 Jul 2001"
+.TH g_confrms 1 "Mon 23 Jul 2001"
 .SH NAME
 g_confrms
 .B VERSION 3.0

diff --git a/man/man1/g_covar.1 b/man/man1/g_covar.1
index bb2aa72cb1081093d25abe1c1fe0b97cac1c854b..01a84306fcf6525574a6f0df2f8d39747049390a 100644 (file)
--- a/man/man1/g_covar.1
+++ b/man/man1/g_covar.1
@@ -1,4 +1,4 @@
-.TH g_covar 1 "Thu 5 Jul 2001"
+.TH g_covar 1 "Mon 23 Jul 2001"
 .SH NAME
 g_covar
 .B VERSION 3.0
@@ -19,6 +19,7 @@ g_covar
 .BI "-b" " time "
 .BI "-e" " time "
 .BI "-dt" " time "
+.BI "-tu" " enum "
 .BI "-[no]fit" ""
 .BI "-[no]ref" ""
 .BI "-[no]mwa" ""
@@ -120,6 +121,25 @@ written.
 .BI "-dt"  " time" "     -1" 
  Only use frame when t MOD dt = first time (ps)
 
+.BI "-tu"  " enum" " ps" 
+ Time unit: 
+.B ps
+, 
+.B fs
+, 
+.B ns
+, 
+.B us
+, 
+.B ms
+, 
+.B s
+, 
+.B m
+or 
+.B h
+
+
 .BI "-[no]fit"  "   yes"
  Fit to a reference structure
 

diff --git a/man/man1/g_density.1 b/man/man1/g_density.1
index 01dd016046925477a848d402da538bfd5aa1f641..305f38a7fdc2507f585103cb6017ee056eecaf2e 100644 (file)
--- a/man/man1/g_density.1
+++ b/man/man1/g_density.1
@@ -1,4 +1,4 @@
-.TH g_density 1 "Thu 5 Jul 2001"
+.TH g_density 1 "Mon 23 Jul 2001"
 .SH NAME
 g_density
 .B VERSION 3.0

diff --git a/man/man1/g_dielectric.1 b/man/man1/g_dielectric.1
index c003b1c2b46db09818edc7edfec9e54c0fd06d5d..61732e338d10bff3646371f29328075642cbf057 100644 (file)
--- a/man/man1/g_dielectric.1
+++ b/man/man1/g_dielectric.1
@@ -1,4 +1,4 @@
-.TH g_dielectric 1 "Thu 5 Jul 2001"
+.TH g_dielectric 1 "Mon 23 Jul 2001"
 .SH NAME
 g_dielectric
 .B VERSION 3.0

diff --git a/man/man1/g_dih.1 b/man/man1/g_dih.1
index bcf426d9df3f867ca0ef6bda767acbc69bfd5475..d01ccc5befc6bfaf20a0790aadc6ab8387754528 100644 (file)
--- a/man/man1/g_dih.1
+++ b/man/man1/g_dih.1
@@ -1,4 +1,4 @@
-.TH g_dih 1 "Thu 5 Jul 2001"
+.TH g_dih 1 "Mon 23 Jul 2001"
 .SH NAME
 g_dih
 .B VERSION 3.0

diff --git a/man/man1/g_dipoles.1 b/man/man1/g_dipoles.1
index 02a5cd661c9370779d5c098ec0cdb4d3b9222dde..9b8b831b3b5f27c2870dbc6fd6aa7f82a6baac8e 100644 (file)
--- a/man/man1/g_dipoles.1
+++ b/man/man1/g_dipoles.1
@@ -1,4 +1,4 @@
-.TH g_dipoles 1 "Thu 5 Jul 2001"
+.TH g_dipoles 1 "Mon 23 Jul 2001"
 .SH NAME
 g_dipoles
 .B VERSION 3.0

diff --git a/man/man1/g_disre.1 b/man/man1/g_disre.1
index a2115566f4ad6ad37dd8d67c6040c87d341e7862..52e643ebfcd081aca575c737f27912c10223ebf7 100644 (file)
--- a/man/man1/g_disre.1
+++ b/man/man1/g_disre.1
@@ -1,4 +1,4 @@
-.TH g_disre 1 "Thu 5 Jul 2001"
+.TH g_disre 1 "Mon 23 Jul 2001"
 .SH NAME
 g_disre
 .B VERSION 3.0

diff --git a/man/man1/g_dist.1 b/man/man1/g_dist.1
index 47b8be95cfdc24cedf80f075166668d155ea6de0..d3b24e1335d4a436dd0bc900883aafbcae75dc0c 100644 (file)
--- a/man/man1/g_dist.1
+++ b/man/man1/g_dist.1
@@ -1,4 +1,4 @@
-.TH g_dist 1 "Thu 5 Jul 2001"
+.TH g_dist 1 "Mon 23 Jul 2001"
 .SH NAME
 g_dist
 .B VERSION 3.0

diff --git a/man/man1/g_dyndom.1 b/man/man1/g_dyndom.1
index 7d1b90691672281a16d0f0cddc6c6624626675e7..9b04d985435b141a5d806e3c8950cd05fd8279b1 100644 (file)
--- a/man/man1/g_dyndom.1
+++ b/man/man1/g_dyndom.1
@@ -1,4 +1,4 @@
-.TH g_dyndom 1 "Thu 5 Jul 2001"
+.TH g_dyndom 1 "Mon 23 Jul 2001"
 .SH NAME
 g_dyndom
 .B VERSION 3.0

diff --git a/man/man1/g_enemat.1 b/man/man1/g_enemat.1
index 7c97cd0933c519e1ce1efdb2e2a27e48277ae517..c519741ada54601508db9d2135548a7aeabf6b68 100644 (file)
--- a/man/man1/g_enemat.1
+++ b/man/man1/g_enemat.1
@@ -1,4 +1,4 @@
-.TH g_enemat 1 "Thu 5 Jul 2001"
+.TH g_enemat 1 "Mon 23 Jul 2001"
 .SH NAME
 g_enemat
 .B VERSION 3.0

diff --git a/man/man1/g_energy.1 b/man/man1/g_energy.1
index 9bef4b4806e5a733fe9b7617d14ca7114ca33e0c..3f719171acd7d4376e545d97108ae57cf4ea6ebb 100644 (file)
--- a/man/man1/g_energy.1
+++ b/man/man1/g_energy.1
@@ -1,4 +1,4 @@
-.TH g_energy 1 "Thu 5 Jul 2001"
+.TH g_energy 1 "Mon 23 Jul 2001"
 .SH NAME
 g_energy
 .B VERSION 3.0

diff --git a/man/man1/g_gyrate.1 b/man/man1/g_gyrate.1
index 7bdd924fe6acb49212d531c0eceea8a02a9a7d80..ede96bacd13b2600ac0155138919091fd25934ab 100644 (file)
--- a/man/man1/g_gyrate.1
+++ b/man/man1/g_gyrate.1
@@ -1,4 +1,4 @@
-.TH g_gyrate 1 "Thu 5 Jul 2001"
+.TH g_gyrate 1 "Mon 23 Jul 2001"
 .SH NAME
 g_gyrate
 .B VERSION 3.0

diff --git a/man/man1/g_h2order.1 b/man/man1/g_h2order.1
index f3679291460f3059e8de3e57f2064511392adce4..4e6aba4801779ecc6276e59aa6e5f8c801adc1d3 100644 (file)
--- a/man/man1/g_h2order.1
+++ b/man/man1/g_h2order.1
@@ -1,4 +1,4 @@
-.TH g_h2order 1 "Thu 5 Jul 2001"
+.TH g_h2order 1 "Mon 23 Jul 2001"
 .SH NAME
 g_h2order
 .B VERSION 3.0

diff --git a/man/man1/g_hbond.1 b/man/man1/g_hbond.1
index 16bbbb31677508a264d68dea78dfadb40e95cc90..09ae48ed239a25840e9b05a9a03be26ca958ac58 100644 (file)
--- a/man/man1/g_hbond.1
+++ b/man/man1/g_hbond.1
@@ -1,4 +1,4 @@
-.TH g_hbond 1 "Thu 5 Jul 2001"
+.TH g_hbond 1 "Mon 23 Jul 2001"
 .SH NAME
 g_hbond
 .B VERSION 3.0

diff --git a/man/man1/g_helix.1 b/man/man1/g_helix.1
index 9147ef8d8a01f199455f26aef2b649abc21108d3..5a57df0d0ba0858faa1d4b7255ae97acc096982e 100644 (file)
--- a/man/man1/g_helix.1
+++ b/man/man1/g_helix.1
@@ -1,4 +1,4 @@
-.TH g_helix 1 "Thu 5 Jul 2001"
+.TH g_helix 1 "Mon 23 Jul 2001"
 .SH NAME
 g_helix
 .B VERSION 3.0

diff --git a/man/man1/g_lie.1 b/man/man1/g_lie.1
index 68f05618d8e732c90f78f7a6052294cf537d4948..f42cb258cccba287167ae91da4eafb328b732374 100644 (file)
--- a/man/man1/g_lie.1
+++ b/man/man1/g_lie.1
@@ -1,4 +1,4 @@
-.TH g_lie 1 "Thu 5 Jul 2001"
+.TH g_lie 1 "Mon 23 Jul 2001"
 .SH NAME
 g_lie
 .B VERSION 3.0

diff --git a/man/man1/g_mdmat.1 b/man/man1/g_mdmat.1
index 42cd6d1449fdd223970d3548e8e2776f1e050d57..11a4b0bbdc47750e8e761456de927133d3777a49 100644 (file)
--- a/man/man1/g_mdmat.1
+++ b/man/man1/g_mdmat.1
@@ -1,4 +1,4 @@
-.TH g_mdmat 1 "Thu 5 Jul 2001"
+.TH g_mdmat 1 "Mon 23 Jul 2001"
 .SH NAME
 g_mdmat
 .B VERSION 3.0

diff --git a/man/man1/g_mindist.1 b/man/man1/g_mindist.1
index 43c647e076d721bd13b55e7c14b6993e9502e42c..9338a2735e55b12d8d4ae0d88372d5614bfe0dc0 100644 (file)
--- a/man/man1/g_mindist.1
+++ b/man/man1/g_mindist.1
@@ -1,4 +1,4 @@
-.TH g_mindist 1 "Thu 5 Jul 2001"
+.TH g_mindist 1 "Mon 23 Jul 2001"
 .SH NAME
 g_mindist
 .B VERSION 3.0

diff --git a/man/man1/g_morph.1 b/man/man1/g_morph.1
index 194877fa44c0a513a70b3d72d1fb48077234d7aa..c223e92835fd9dd44bb29da16a55b2b27cbe4a16 100644 (file)
--- a/man/man1/g_morph.1
+++ b/man/man1/g_morph.1
@@ -1,4 +1,4 @@
-.TH g_morph 1 "Thu 5 Jul 2001"
+.TH g_morph 1 "Mon 23 Jul 2001"
 .SH NAME
 g_morph
 .B VERSION 3.0

diff --git a/man/man1/g_msd.1 b/man/man1/g_msd.1
index 75d220f0d0bd7c4f10ebc1fb1b107105d51588e6..890192f8775b7c6323c91ca0ca9050f5ff44655f 100644 (file)
--- a/man/man1/g_msd.1
+++ b/man/man1/g_msd.1
@@ -1,4 +1,4 @@
-.TH g_msd 1 "Thu 5 Jul 2001"
+.TH g_msd 1 "Mon 23 Jul 2001"
 .SH NAME
 g_msd
 .B VERSION 3.0

diff --git a/man/man1/g_nmeig.1 b/man/man1/g_nmeig.1
index c72c3d219ddabcb409469a6d2cd6c9837f94fec7..82d9c1413d33409dcff94bdd1c327335416bf3b5 100644 (file)
--- a/man/man1/g_nmeig.1
+++ b/man/man1/g_nmeig.1
@@ -1,4 +1,4 @@
-.TH g_nmeig 1 "Thu 5 Jul 2001"
+.TH g_nmeig 1 "Mon 23 Jul 2001"
 .SH NAME
 g_nmeig
 .B VERSION 3.0

diff --git a/man/man1/g_nmens.1 b/man/man1/g_nmens.1
index 4b2ed679208e02f6b458964bd1382ccfabe6c5d0..c65b82ce5d6b2490cac6297f56714f1d0e24db05 100644 (file)
--- a/man/man1/g_nmens.1
+++ b/man/man1/g_nmens.1
@@ -1,4 +1,4 @@
-.TH g_nmens 1 "Thu 5 Jul 2001"
+.TH g_nmens 1 "Mon 23 Jul 2001"
 .SH NAME
 g_nmens
 .B VERSION 3.0

diff --git a/man/man1/g_order.1 b/man/man1/g_order.1
index 13716ca7519ea0c8c0d6abbf1aa7505fb4996f5b..33b1a90cc33df270ea50985c60c4c0a0f5dd9183 100644 (file)
--- a/man/man1/g_order.1
+++ b/man/man1/g_order.1
@@ -1,4 +1,4 @@
-.TH g_order 1 "Thu 5 Jul 2001"
+.TH g_order 1 "Mon 23 Jul 2001"
 .SH NAME
 g_order
 .B VERSION 3.0

diff --git a/man/man1/g_potential.1 b/man/man1/g_potential.1
index 92baca0b1b48354b4a47fe183078556c370dbb1c..7ef24cdfb8606fe213a2fdda518208f401278422 100644 (file)
--- a/man/man1/g_potential.1
+++ b/man/man1/g_potential.1
@@ -1,4 +1,4 @@
-.TH g_potential 1 "Thu 5 Jul 2001"
+.TH g_potential 1 "Mon 23 Jul 2001"
 .SH NAME
 g_potential
 .B VERSION 3.0

diff --git a/man/man1/g_rama.1 b/man/man1/g_rama.1
index 998ba5046fd8126348f7891090d417e505432f64..bfc7e580078ab56e0739861394f2754d9c72ace8 100644 (file)
--- a/man/man1/g_rama.1
+++ b/man/man1/g_rama.1
@@ -1,4 +1,4 @@
-.TH g_rama 1 "Thu 5 Jul 2001"
+.TH g_rama 1 "Mon 23 Jul 2001"
 .SH NAME
 g_rama
 .B VERSION 3.0

diff --git a/man/man1/g_rdf.1 b/man/man1/g_rdf.1
index 211d41661998edf9f4bf67a2d43470aa3da3554a..ea71d3058e2a35380962dfa18fc24bc029a14bc8 100644 (file)
--- a/man/man1/g_rdf.1
+++ b/man/man1/g_rdf.1
@@ -1,4 +1,4 @@
-.TH g_rdf 1 "Thu 5 Jul 2001"
+.TH g_rdf 1 "Mon 23 Jul 2001"
 .SH NAME
 g_rdf
 .B VERSION 3.0

diff --git a/man/man1/g_rms.1 b/man/man1/g_rms.1
index 2100eec2e6f6600eaad01be8d8a97626c1287721..aede270a382469ca09468fa61f2410df130fc5a5 100644 (file)
--- a/man/man1/g_rms.1
+++ b/man/man1/g_rms.1
@@ -1,4 +1,4 @@
-.TH g_rms 1 "Thu 5 Jul 2001"
+.TH g_rms 1 "Mon 23 Jul 2001"
 .SH NAME
 g_rms
 .B VERSION 3.0

diff --git a/man/man1/g_rmsdist.1 b/man/man1/g_rmsdist.1
index aab2f012f40a36d4729ce349180a7c84beb7b299..eab6167824a6d5ba1a10d93574cbfe8c4fe8158d 100644 (file)
--- a/man/man1/g_rmsdist.1
+++ b/man/man1/g_rmsdist.1
@@ -1,4 +1,4 @@
-.TH g_rmsdist 1 "Thu 5 Jul 2001"
+.TH g_rmsdist 1 "Mon 23 Jul 2001"
 .SH NAME
 g_rmsdist
 .B VERSION 3.0

diff --git a/man/man1/g_rmsf.1 b/man/man1/g_rmsf.1
index 6d680e3d6ae6bb2e84e09b5afa70a91d140fbc43..3001155e390de2a67e5a1e5b7256746ae371619e 100644 (file)
--- a/man/man1/g_rmsf.1
+++ b/man/man1/g_rmsf.1
@@ -1,4 +1,4 @@
-.TH g_rmsf 1 "Thu 5 Jul 2001"
+.TH g_rmsf 1 "Mon 23 Jul 2001"
 .SH NAME
 g_rmsf
 .B VERSION 3.0

diff --git a/man/man1/g_rotacf.1 b/man/man1/g_rotacf.1
index a281a6bb1516158512388145386583749263fe02..ef95625e65eee4bbce8e41861a2a06271beeadd2 100644 (file)
--- a/man/man1/g_rotacf.1
+++ b/man/man1/g_rotacf.1
@@ -1,4 +1,4 @@
-.TH g_rotacf 1 "Thu 5 Jul 2001"
+.TH g_rotacf 1 "Mon 23 Jul 2001"
 .SH NAME
 g_rotacf
 .B VERSION 3.0

diff --git a/man/man1/g_saltbr.1 b/man/man1/g_saltbr.1
index 7e88e2f6ade51a43f50e6a421728c92005dec5fb..1fe07faa9d18916097a7bfa361677d71f5f6d755 100644 (file)
--- a/man/man1/g_saltbr.1
+++ b/man/man1/g_saltbr.1
@@ -1,4 +1,4 @@
-.TH g_saltbr 1 "Thu 5 Jul 2001"
+.TH g_saltbr 1 "Mon 23 Jul 2001"
 .SH NAME
 g_saltbr
 .B VERSION 3.0

diff --git a/man/man1/g_sas.1 b/man/man1/g_sas.1
index 88dfa5a433bada64fd32ff516ce48725537d3a05..ee0de968c8225d3cf02bb871ddd2af3159b270fb 100644 (file)
--- a/man/man1/g_sas.1
+++ b/man/man1/g_sas.1
@@ -1,4 +1,4 @@
-.TH g_sas 1 "Thu 5 Jul 2001"
+.TH g_sas 1 "Mon 23 Jul 2001"
 .SH NAME
 g_sas
 .B VERSION 3.0

diff --git a/man/man1/g_sgangle.1 b/man/man1/g_sgangle.1
index a4b0004a42183a99734c7c4d3e81b965172f3d64..a410f16f7e459fb9c52fc5c010fd90b9a0c877cf 100644 (file)
--- a/man/man1/g_sgangle.1
+++ b/man/man1/g_sgangle.1
@@ -1,4 +1,4 @@
-.TH g_sgangle 1 "Thu 5 Jul 2001"
+.TH g_sgangle 1 "Mon 23 Jul 2001"
 .SH NAME
 g_sgangle
 .B VERSION 3.0

diff --git a/man/man1/g_sorient.1 b/man/man1/g_sorient.1
index 65c0109ef442626308f9d8be6b69d02150b4bb54..b000332fa38d1bbb01868f9633afb46563ea5a1d 100644 (file)
--- a/man/man1/g_sorient.1
+++ b/man/man1/g_sorient.1
@@ -1,4 +1,4 @@
-.TH g_sorient 1 "Thu 5 Jul 2001"
+.TH g_sorient 1 "Mon 23 Jul 2001"
 .SH NAME
 g_sorient
 .B VERSION 3.0

diff --git a/man/man1/g_tcaf.1 b/man/man1/g_tcaf.1
index fdcda564aee01436987ca0bb7e8cd07daf17c05a..600d627cbd8b893bd8f61aaacd40522f00e919d6 100644 (file)
--- a/man/man1/g_tcaf.1
+++ b/man/man1/g_tcaf.1
@@ -1,4 +1,4 @@
-.TH g_tcaf 1 "Thu 5 Jul 2001"
+.TH g_tcaf 1 "Mon 23 Jul 2001"
 .SH NAME
 g_tcaf
 .B VERSION 3.0

diff --git a/man/man1/g_traj.1 b/man/man1/g_traj.1
index af1a203024af0fe3426fc29f6cc1e7bc2d893e5d..2edf88c16600465a7ae6c4921f4d51b97889c4d7 100644 (file)
--- a/man/man1/g_traj.1
+++ b/man/man1/g_traj.1
@@ -1,4 +1,4 @@
-.TH g_traj 1 "Thu 5 Jul 2001"
+.TH g_traj 1 "Mon 23 Jul 2001"
 .SH NAME
 g_traj
 .B VERSION 3.0
@@ -19,6 +19,7 @@ g_traj
 .BI "-b" " time "
 .BI "-e" " time "
 .BI "-dt" " time "
+.BI "-tu" " enum "
 .BI "-[no]w" ""
 .BI "-[no]com" ""
 .BI "-[no]mol" ""
@@ -113,6 +114,25 @@ This implies
 .BI "-dt"  " time" "     -1" 
  Only use frame when t MOD dt = first time (ps)
 
+.BI "-tu"  " enum" " ps" 
+ Time unit: 
+.B ps
+, 
+.B fs
+, 
+.B ns
+, 
+.B us
+, 
+.B ms
+, 
+.B s
+, 
+.B m
+or 
+.B h
+
+
 .BI "-[no]w"  "    no"
  View output xvg, xpm, eps and pdb files
 

diff --git a/man/man1/g_velacc.1 b/man/man1/g_velacc.1
index 855ac352012a7f5fcda8ae08b079a024c637a140..557a96c7692d42676a5e84372c37714a3bc420a6 100644 (file)
--- a/man/man1/g_velacc.1
+++ b/man/man1/g_velacc.1
@@ -1,4 +1,4 @@
-.TH g_velacc 1 "Thu 5 Jul 2001"
+.TH g_velacc 1 "Mon 23 Jul 2001"
 .SH NAME
 g_velacc
 .B VERSION 3.0

diff --git a/man/man1/genbox.1 b/man/man1/genbox.1
index 43787943d993791bf9b3255d4a9cde0b8c15faac..bb547bf4fbb5f2f91d3bc24eb79d5f763d651506 100644 (file)
--- a/man/man1/genbox.1
+++ b/man/man1/genbox.1
@@ -1,4 +1,4 @@
-.TH genbox 1 "Thu 5 Jul 2001"
+.TH genbox 1 "Mon 23 Jul 2001"
 .SH NAME
 genbox
 .B VERSION 3.0

diff --git a/man/man1/genconf.1 b/man/man1/genconf.1
index 361d4d32f106b61ca0f7c60e0492c3a580da220e..a7e3c368f80d216c5f326877dd2fe11732e118e8 100644 (file)
--- a/man/man1/genconf.1
+++ b/man/man1/genconf.1
@@ -1,4 +1,4 @@
-.TH genconf 1 "Thu 5 Jul 2001"
+.TH genconf 1 "Mon 23 Jul 2001"
 .SH NAME
 genconf
 .B VERSION 3.0

diff --git a/man/man1/genion.1 b/man/man1/genion.1
index a140d85e0679493976f58dcb17785bce36c85b15..cb60ea4e00cfec64227336cd8fd7e2f0f3070793 100644 (file)
--- a/man/man1/genion.1
+++ b/man/man1/genion.1
@@ -1,4 +1,4 @@
-.TH genion 1 "Thu 5 Jul 2001"
+.TH genion 1 "Mon 23 Jul 2001"
 .SH NAME
 genion
 .B VERSION 3.0

diff --git a/man/man1/genpr.1 b/man/man1/genpr.1
index 14296051e2b6f9b67488ee28416a41a5e9f8adab..edf4106daea2430e2ddfaddd9e8f5cf8bdbcee63 100644 (file)
--- a/man/man1/genpr.1
+++ b/man/man1/genpr.1
@@ -1,4 +1,4 @@
-.TH genpr 1 "Thu 5 Jul 2001"
+.TH genpr 1 "Mon 23 Jul 2001"
 .SH NAME
 genpr
 .B VERSION 3.0

diff --git a/man/man1/gmxcheck.1 b/man/man1/gmxcheck.1
index b66af226a7dc1c616906741b8aac526a39fad47e..f1b049780fde72327e1a277ce9ee513f87551c39 100644 (file)
--- a/man/man1/gmxcheck.1
+++ b/man/man1/gmxcheck.1
@@ -1,4 +1,4 @@
-.TH gmxcheck 1 "Thu 5 Jul 2001"
+.TH gmxcheck 1 "Mon 23 Jul 2001"
 .SH NAME
 gmxcheck
 .B VERSION 3.0

diff --git a/man/man1/gmxdump.1 b/man/man1/gmxdump.1
index 6aba6aaa0f8b18e83c0ff915b4c805124f293abe..7f2e32aa25484ae8f424a9369a70eedcfd4a9d3f 100644 (file)
--- a/man/man1/gmxdump.1
+++ b/man/man1/gmxdump.1
@@ -1,4 +1,4 @@
-.TH gmxdump 1 "Thu 5 Jul 2001"
+.TH gmxdump 1 "Mon 23 Jul 2001"
 .SH NAME
 gmxdump
 .B VERSION 3.0

diff --git a/man/man1/grompp.1 b/man/man1/grompp.1
index d8cf50784ab73eacd198276d90cc1bb5e9502cd8..10a3accd9302623e782e57d7207e790f0d2588f3 100644 (file)
--- a/man/man1/grompp.1
+++ b/man/man1/grompp.1
@@ -1,4 +1,4 @@
-.TH grompp 1 "Thu 5 Jul 2001"
+.TH grompp 1 "Mon 23 Jul 2001"
 .SH NAME
 grompp
 .B VERSION 3.0

diff --git a/man/man1/highway.1 b/man/man1/highway.1
index 2bd3ee6a9b74dab40a33e61d6d3685f39ebda806..5207e63514e2237cf8ec4dace2d89b71eb976201 100644 (file)
--- a/man/man1/highway.1
+++ b/man/man1/highway.1
@@ -1,4 +1,4 @@
-.TH highway 1 "Thu 5 Jul 2001"
+.TH highway 1 "Mon 23 Jul 2001"
 .SH NAME
 highway
 .B VERSION 3.0

diff --git a/man/man1/make_ndx.1 b/man/man1/make_ndx.1
index 07acf6b45c92169b3851f483fe57d5fa7a6bc523..8bf5119d9968e98e54b3e52e4cf69acfaa12d034 100644 (file)
--- a/man/man1/make_ndx.1
+++ b/man/man1/make_ndx.1
@@ -1,4 +1,4 @@
-.TH make_ndx 1 "Thu 5 Jul 2001"
+.TH make_ndx 1 "Mon 23 Jul 2001"
 .SH NAME
 make_ndx
 .B VERSION 3.0

diff --git a/man/man1/mdrun.1 b/man/man1/mdrun.1
index 6f72d81fa50614912e18f226aeb9c499f63b2477..034f51bc6e4a53b67f07e7420f701aa845357d88 100644 (file)
--- a/man/man1/mdrun.1
+++ b/man/man1/mdrun.1
@@ -1,4 +1,4 @@
-.TH mdrun 1 "Thu 5 Jul 2001"
+.TH mdrun 1 "Mon 23 Jul 2001"
 .SH NAME
 mdrun
 .B VERSION 3.0

diff --git a/man/man1/mk_angndx.1 b/man/man1/mk_angndx.1
index 896da85b049c7e2f4eaef6dda91921082c5c9e84..103e4fbcf0912b348dfcd13b394966ab12862456 100644 (file)
--- a/man/man1/mk_angndx.1
+++ b/man/man1/mk_angndx.1
@@ -1,4 +1,4 @@
-.TH mk_angndx 1 "Thu 5 Jul 2001"
+.TH mk_angndx 1 "Mon 23 Jul 2001"
 .SH NAME
 mk_angndx
 .B VERSION 3.0

diff --git a/man/man1/ngmx.1 b/man/man1/ngmx.1
index 3e3801d44939c073aedff22c30ead3591ab9c877..eac673da54c3fd41ad3bf3d6d498b83f3569839a 100644 (file)
--- a/man/man1/ngmx.1
+++ b/man/man1/ngmx.1
@@ -1,4 +1,4 @@
-.TH ngmx 1 "Thu 5 Jul 2001"
+.TH ngmx 1 "Mon 23 Jul 2001"
 .SH NAME
 ngmx
 .B VERSION 3.0

diff --git a/man/man1/nmrun.1 b/man/man1/nmrun.1
index 893755e900640d65882f31d48a78dc7a9bae1280..b9e8c3cbff300c30474465042dcab80bbf371c42 100644 (file)
--- a/man/man1/nmrun.1
+++ b/man/man1/nmrun.1
@@ -1,4 +1,4 @@
-.TH nmrun 1 "Thu 5 Jul 2001"
+.TH nmrun 1 "Mon 23 Jul 2001"
 .SH NAME
 nmrun
 .B VERSION 3.0

diff --git a/man/man1/pdb2gmx.1 b/man/man1/pdb2gmx.1
index a15b525e11349907ef28b095d5518c02290fec55..09d298882986774e081d0a29f26649279960d9fe 100644 (file)
--- a/man/man1/pdb2gmx.1
+++ b/man/man1/pdb2gmx.1
@@ -1,4 +1,4 @@
-.TH pdb2gmx 1 "Thu 5 Jul 2001"
+.TH pdb2gmx 1 "Mon 23 Jul 2001"
 .SH NAME
 pdb2gmx
 .B VERSION 3.0

diff --git a/man/man1/protonate.1 b/man/man1/protonate.1
index fa3687343b94da3748ba2fe299df6ff7b937ec6e..8dd915bcede0ad792e6c5c71d0e1a55b867ea27a 100644 (file)
--- a/man/man1/protonate.1
+++ b/man/man1/protonate.1
@@ -1,4 +1,4 @@
-.TH protonate 1 "Thu 5 Jul 2001"
+.TH protonate 1 "Mon 23 Jul 2001"
 .SH NAME
 protonate
 .B VERSION 3.0

diff --git a/man/man1/tpbconv.1 b/man/man1/tpbconv.1
index 830d2b398d41d9690806ab7f8b242bcbdb031367..ed978c191ffeab6549035e1af1ae57c97053cf1f 100644 (file)
--- a/man/man1/tpbconv.1
+++ b/man/man1/tpbconv.1
@@ -1,4 +1,4 @@
-.TH tpbconv 1 "Thu 5 Jul 2001"
+.TH tpbconv 1 "Mon 23 Jul 2001"
 .SH NAME
 tpbconv
 .B VERSION 3.0

diff --git a/man/man1/trjcat.1 b/man/man1/trjcat.1
index c4f23341dbffdf8cec94a5e1c0cf08389e2cd363..b9fbfe6f034e66fe265c10ea66154b18a0db6f73 100644 (file)
--- a/man/man1/trjcat.1
+++ b/man/man1/trjcat.1
@@ -1,4 +1,4 @@
-.TH trjcat 1 "Thu 5 Jul 2001"
+.TH trjcat 1 "Mon 23 Jul 2001"
 .SH NAME
 trjcat
 .B VERSION 3.0

diff --git a/man/man1/trjconv.1 b/man/man1/trjconv.1
index f55388c318fad277533f35f23d8b40eb043eed16..972d125e12e46ce247d457ac7c9221e488dbfe2d 100644 (file)
--- a/man/man1/trjconv.1
+++ b/man/man1/trjconv.1
@@ -1,4 +1,4 @@
-.TH trjconv 1 "Thu 5 Jul 2001"
+.TH trjconv 1 "Mon 23 Jul 2001"
 .SH NAME
 trjconv
 .B VERSION 3.0

diff --git a/man/man1/trjorder.1 b/man/man1/trjorder.1
index 42e463d73ea424fc31ea9772b8af0498a63965c7..f79b2847e84e18b593cb13e01964c03a28a577d5 100644 (file)
--- a/man/man1/trjorder.1
+++ b/man/man1/trjorder.1
@@ -1,4 +1,4 @@
-.TH trjorder 1 "Thu 5 Jul 2001"
+.TH trjorder 1 "Mon 23 Jul 2001"
 .SH NAME
 trjorder
 .B VERSION 3.0

diff --git a/man/man1/wheel.1 b/man/man1/wheel.1
index 9b8325fc2665e1fa5b3394744f3906ebf1caf747..6c54d3857163ae5e78ca710b24409c893e1a2335 100644 (file)
--- a/man/man1/wheel.1
+++ b/man/man1/wheel.1
@@ -1,4 +1,4 @@
-.TH wheel 1 "Thu 5 Jul 2001"
+.TH wheel 1 "Mon 23 Jul 2001"
 .SH NAME
 wheel
 .B VERSION 3.0

diff --git a/man/man1/x2top.1 b/man/man1/x2top.1
index be1ba477ae09d687718c7304318853b3bdbbed5b..c9897dee7b94b4d4eba62b95ccdbe93ad9225db1 100644 (file)
--- a/man/man1/x2top.1
+++ b/man/man1/x2top.1
@@ -1,4 +1,4 @@
-.TH x2top 1 "Thu 5 Jul 2001"
+.TH x2top 1 "Mon 23 Jul 2001"
 .SH NAME
 x2top
 .B VERSION 3.0

diff --git a/man/man1/xpm2ps.1 b/man/man1/xpm2ps.1
index d95c16e151a283808a33961824d53724d1c7b0b8..891b5c12ac1498682e30f4d7ed6bd3570f90ad54 100644 (file)
--- a/man/man1/xpm2ps.1
+++ b/man/man1/xpm2ps.1
@@ -1,4 +1,4 @@
-.TH xpm2ps 1 "Thu 5 Jul 2001"
+.TH xpm2ps 1 "Mon 23 Jul 2001"
 .SH NAME
 xpm2ps
 .B VERSION 3.0

diff --git a/man/man1/xrama.1 b/man/man1/xrama.1
index a30248823c809d716b897d5a9fafe8a6c55e1973..155afd057a6b5a116162a1022a6ce93fc9898b1f 100644 (file)
--- a/man/man1/xrama.1
+++ b/man/man1/xrama.1
@@ -1,4 +1,4 @@
-.TH xrama 1 "Thu 5 Jul 2001"
+.TH xrama 1 "Mon 23 Jul 2001"
 .SH NAME
 xrama
 .B VERSION 3.0