Merge release-2018 into release-2019

Change-Id: Ifb898eb777bc2986d600cdbf190203dda3f441ec

diff --git a/docs/CMakeLists.txt b/docs/CMakeLists.txt
index dff9e6cd2e053c3e096b34f1ff59934fd9a6b62b..c0d29b9794421376a221458ed2b8edfac0556329 100644 (file)
--- a/docs/CMakeLists.txt
+++ b/docs/CMakeLists.txt
@@ -1,7 +1,7 @@
 #
 # This file is part of the GROMACS molecular simulation package.
 #
-# Copyright (c) 2014,2015,2016,2017,2018, by the GROMACS development team, led by
+# Copyright (c) 2014,2015,2016,2017,2018,2019, by the GROMACS development team, led by
 # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
 # and including many others, as listed in the AUTHORS file in the
 # top-level source directory and at http://www.gromacs.org.
@@ -377,6 +377,7 @@ if (SPHINX_FOUND)
         release-notes/2019/major/deprecated-functionality.rst
         release-notes/2019/major/portability.rst
         release-notes/2019/major/miscellaneous.rst
+        release-notes/2018/2018.6.rst
         release-notes/2018/2018.5.rst
         release-notes/2018/2018.4.rst
         release-notes/2018/2018.3.rst

diff --git a/docs/release-notes/2018/2018.5.rst b/docs/release-notes/2018/2018.5.rst
index 61573df4dd3bf66cdfa03f178ea1afd3629969e5..692026c05cc5e0050e7d1dea21eed749fea48b2f 100644 (file)
--- a/docs/release-notes/2018/2018.5.rst
+++ b/docs/release-notes/2018/2018.5.rst
@@ -1,10 +1,10 @@
 GROMACS 2018.5 release notes
 ----------------------------
 
-This version was released on TODO, 2018. These release notes document
+This version was released on January 22, 2019. These release notes document
 the changes that have taken place in GROMACS since version 2018.4, to fix known
-issues. It also incorporates all fixes made in version TODO and
-earlier, which you can find described in the :ref:`release-notes`.
+issues. A complete list of fixes and their descriptions can be found in
+the :ref:`release-notes`.
 
 Fixes where mdrun could behave incorrectly
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -39,16 +39,43 @@ cause a slight loss of accuracy in inhomogeneous systems.
 :issue: `2808`
 
 Fix acceleration with ``cos-acceleration``
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+""""""""""""""""""""""""""""""""""""""""""
 
 A factor of 2 was missing from the acceleration value, leading to incorrect
 results when e.g. calculating viscosities.
 
 :issue: `2572`
 
+Fix checkpoint restart of tpr with infinite step count
+""""""""""""""""""""""""""""""""""""""""""""""""""""""
+
+An issue was introduced that caused :ref:`mdrun <gmx mdrun>` to refuse to start
+when using infinite step counts. Now :ref:`mdrun <gmx mdrun>` properly accepts
+those files again.
+
+:issue:`2757`
+
+Fix energy history file reading
+"""""""""""""""""""""""""""""""
+
+A check was missing when reading energy files from a simulation that was stopped
+before the first value had been written to the file.
+
+:issue:`2781`
+
 Fixes for ``gmx`` tools
 ^^^^^^^^^^^^^^^^^^^^^^^
 
+Fix trjconv -ndec
+"""""""""""""""""""""""""""""""""""""""""""""""""""""""""
+
+This only works for writing .xtc files. The code and documentation now
+works correctly with .gro files, which was changed in 2016 release series so that
+it would only write fixed-width columns.
+
+:issue: `2813`
+:issue: `2037`
+
 Fixes to improve portability
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
@@ -73,3 +100,9 @@ issue.  Both the issue and some of the complexity are now fixed.
 
 :issue: `2705`
 
+Added code generation support for NVIDIA Turing GPUs
+"""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""
+With CUDA 10.0 NVIDIA Turing GPUs can be directly targeted by the nvcc
+compiler. We now generate the appropriate set of flags for the Turing architecture
+by default when using CUDA 10 (or later).
+

diff --git a/docs/release-notes/2018/2018.6.rst b/docs/release-notes/2018/2018.6.rst
new file mode 100644 (file)
index 0000000..a2ee52c
--- /dev/null
+++ b/docs/release-notes/2018/2018.6.rst
@@ -0,0 +1,19 @@
+GROMACS 2018.6 release notes
+----------------------------
+
+This version was released on TODO, 2019. These release notes document
+the changes that have taken place in GROMACS since version 2018.5, to fix known
+issues. It also incorporates all fixes made in version TODO and
+earlier, which you can find described in the :ref:`release-notes`.
+
+Fixes where mdrun could behave incorrectly
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Fixes for ``gmx`` tools
+^^^^^^^^^^^^^^^^^^^^^^^
+
+Fixes to improve portability
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Miscellaneous
+^^^^^^^^^^^^^

diff --git a/docs/release-notes/index.rst b/docs/release-notes/index.rst
index 99f9c866d3edfdd13a39d3dcec8839e7cbe0e08f..d200921c360cc40f3827a06d9e04440f0be58647 100644 (file)
--- a/docs/release-notes/index.rst
+++ b/docs/release-notes/index.rst
@@ -57,6 +57,7 @@ Patch releases
 .. toctree::
    :maxdepth: 1
 
+   2018/2018.6
    2018/2018.5
    2018/2018.4
    2018/2018.3