Moved src/gmxlib/ to src/gromacs/gmxlib/.

All source files from there are now included in the libgromacs, together
with mdlib.  A separate CMakeLists.txt was kept in the subdirectory to
configure the kernels etc.  This required some serious hacking with
CMake, because several things were still required to be set in the same
CMakeLists.txt where the library target is created, i.e., in
src/gromacs/CMakeLists.txt.  The solution could probably be improved,
but at least it seems to work as it is now.

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 9448fcba9db21bd3b37f25b62121c6f4494d0cf9..22065465344ed28f8ee302071ba6e2291a899a1e 100644 (file)
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1,7 +1,6 @@
 configure_file(${CMAKE_CURRENT_SOURCE_DIR}/config.h.cmakein ${CMAKE_CURRENT_BINARY_DIR}/config.h)
 
 add_subdirectory(gromacs)
-add_subdirectory(gmxlib)
 add_subdirectory(kernel)
 
 if(NOT GMX_FAHCORE)

diff --git a/src/gmxlib/CMakeLists.txt b/src/gmxlib/CMakeLists.txt
deleted file mode 100644 (file)
index 42def36..0000000
--- a/src/gmxlib/CMakeLists.txt
+++ /dev/null
@@ -1,155 +0,0 @@
-include_directories(${CMAKE_CURRENT_SOURCE_DIR})
-
-
-# add target that generates version.c every time a make is run
-# only do this if we generate the version
-if(USE_VERSION_H)
-    add_custom_target(gmx_version ALL
-            COMMAND ${CMAKE_COMMAND} 
-                -D Git_EXECUTABLE="${Git_EXECUTABLE}"
-                -D Git_VERSION="${Git_VERSION}"
-                -D PROJECT_VERSION="${PROJECT_VERSION}"
-                -D PROJECT_SOURCE_DIR="${PROJECT_SOURCE_DIR}"
-                -D VERSION_C_CMAKEIN="${CMAKE_SOURCE_DIR}/src/gmxlib/version.c.cmakein"
-                -D VERSION_C_OUT="${CMAKE_CURRENT_BINARY_DIR}/version.c"
-                -P ${CMAKE_SOURCE_DIR}/cmake/gmxGenerateVersionInfo.cmake 
-            WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}/src/gmxlib 
-            DEPENDS ${CMAKE_SOURCE_DIR}/src/gmxlib/version.c.cmakein
-            COMMENT "Generating version information")
-endif()
-
-# The nonbonded directory contains subdirectories that are only
-# conditionally built, so we cannot use a GLOB_RECURSE here.
-file(GLOB GMXLIB_SOURCES *.c 
-     selection/*.c trajana/*.c
-     statistics/*.c nonbonded/*.c nonbonded/nb_kernel_c/*.c)
-
-# This source file is generated
-file(GLOB VERSION_SOURCE version.c)
-
-if(VERSION_SOURCE)
-       list(REMOVE_ITEM GMXLIB_SOURCES ${VERSION_SOURCE})
-endif(VERSION_SOURCE)
-
-# add version.c to the list of sources and tell cmake that it is generated
-if(USE_VERSION_H)
-LIST(APPEND GMXLIB_SOURCES ${CMAKE_CURRENT_BINARY_DIR}/version.c) # auto-generated
-set_source_files_properties(${CMAKE_CURRENT_BINARY_DIR}/version.c 
-                PROPERTIES GENERATED true)
-endif()
-
-if(GMX_DOUBLE)
-  set(SSETYPE sse2)
-else()
-  set(SSETYPE sse)
-endif()
-
-if(GMX_IA32_ASM)
-  file(GLOB GMX_SSEKERNEL_C_SRC   nonbonded/nb_kernel_ia32_${SSETYPE}/*.c)
-  if(GMX_ASM_USEASM-NASM)
-    file(GLOB GMX_SSEKERNEL_ASM_SRC nonbonded/nb_kernel_ia32_${SSETYPE}/*intel_syntax*.s)    
-  else()
-    file(GLOB GMX_SSEKERNEL_ASM_SRC nonbonded/nb_kernel_ia32_${SSETYPE}/*${SSETYPE}.s nonbonded/nb_kernel_ia32_${SSETYPE}/*asm.s)
-  endif()
-endif(GMX_IA32_ASM)
-
-if(GMX_X86_64_ASM)
-  file(GLOB GMX_SSEKERNEL_C_SRC   nonbonded/nb_kernel_x86_64_${SSETYPE}/*.c)
-  if(GMX_ASM_USEASM-NASM)
-    file(GLOB GMX_SSEKERNEL_ASM_SRC nonbonded/nb_kernel_x86_64_${SSETYPE}/*intel_syntax*.s)
-  else()
-    file(GLOB GMX_SSEKERNEL_ASM_SRC nonbonded/nb_kernel_x86_64_${SSETYPE}/*${SSETYPE}.s nonbonded/nb_kernel_x86_64_${SSETYPE}/*asm.s)
-  endif()
-endif(GMX_X86_64_ASM)
-
-if(GMX_FORTRAN)
-  if (GMX_DOUBLE)
-    file(GLOB FORTRAN_SOURCES nonbonded/nb_kernel_f77_double/*.[cf])
-  else(GMX_DOUBLE)
-    file(GLOB FORTRAN_SOURCES nonbonded/nb_kernel_f77_single/*.[cf])
-  endif(GMX_DOUBLE)
-endif(GMX_FORTRAN)
-
-if(GMX_POWER6)
-  file(GLOB FORTRAN_SOURCES nonbonded/nb_kernel_power6/*.[cF])
-endif(GMX_POWER6)
-
-if(GMX_BLUEGENE)
-  file(GLOB GMX_BLUEGENE_C_SRC nonbonded/nb_kernel_bluegene/*.c)
-endif(GMX_BLUEGENE)
-
-if(GMX_PPC_ALTIVEC)
-  file(GLOB GMX_PPC_ALTIVEC_SRC nonbonded/nb_kernel_ppc_altivec/*.c)
-endif(GMX_PPC_ALTIVEC)
-
-if(NOT GMX_EXTERNAL_BLAS)
-  file(GLOB BLAS_SOURCES gmx_blas/*.c)
-endif(NOT GMX_EXTERNAL_BLAS)
-
-if(NOT GMX_EXTERNAL_LAPACK)
-  file(GLOB LAPACK_SOURCES gmx_lapack/*.c)
-endif(NOT GMX_EXTERNAL_LAPACK)
-
-# This would be the standard way to include thread_mpi, but we want libgmx
-# to link the functions directly
-#if(GMX_THREADS)
-#    add_subdirectory(thread_mpi)
-#endif(GMX_THREADS)
-#target_link_libraries(gmx ${GMX_EXTRA_LIBRARIES} ${THREAD_MPI_LIB})
-
-# Files called xxx_test.c are test drivers with a main() function for module xxx.c,
-# so they should not be included in the library
-file(GLOB_RECURSE NOT_GMXLIB_SOURCES *_test.c *\#*)
-list(REMOVE_ITEM GMXLIB_SOURCES ${NOT_GMXLIB_SOURCES})  
-# Selection has test_ instead of _test.  Removing here for special case, perhaps make general?
-if(GMX_FAHCORE)
-    file(GLOB SELECTION_TEST selection/test*)
-    list(REMOVE_ITEM GMXLIB_SOURCES ${SELECTION_TEST})
-endif(GMX_FAHCORE)
-
-# only fiddle with assembly kernels if we're not doing OpenMM build
-if(NOT GMX_OPENMM) 
-if(GMX_ASM_USEASM-NASM)
-  enable_language(ASM-NASM)
-
-  # if NASM is used, we need a special build command for windows...
-  FOREACH(SRC ${GMX_SSEKERNEL_ASM_SRC})
-    GET_FILENAME_COMPONENT(FILE_BASE ${SRC} NAME_WE)
-    SET(OBJ ${CMAKE_CURRENT_BINARY_DIR}/${FILE_BASE}${CMAKE_C_OUTPUT_EXTENSION})
-
-    ADD_CUSTOM_COMMAND(OUTPUT ${OBJ}
-                       MAIN_DEPENDENCY ${SRC}
-                       COMMAND ${CMAKE_ASM-NASM_COMPILER} -f ${CMAKE_ASM-NASM_OBJECT_FORMAT} -o ${OBJ} ${SRC})
-
-    SET(ALL_ASM_OBJS ${ALL_ASM_OBJS} ${OBJ})
-  ENDFOREACH(SRC ${GMX_SSEKERNEL_ASM_SRC})
-  set(GMX_SSEKERNEL_ASM_SRC ${ALL_ASM_OBJS})
-
-else(GMX_ASM_USEASM-NASM)
-
-  enable_language(ASM-ATT)
-  SET(CMAKE_ASM-ATT_COMPILER ${CMAKE_C_COMPILER})
-  if(GMX_IA32_ASM)
-    set_source_files_properties(${GMX_SSEKERNEL_ASM_SRC} PROPERTIES COMPILE_FLAGS "-c -m32")
-  else()
-    set_source_files_properties(${GMX_SSEKERNEL_ASM_SRC} PROPERTIES COMPILE_FLAGS "-c -m64")
-  endif()
-
-endif(GMX_ASM_USEASM-NASM)
-endif(NOT GMX_OPENMM)
-
-add_library(gmx ${GMXLIB_SOURCES} ${BLAS_SOURCES} ${LAPACK_SOURCES} ${GMX_SSEKERNEL_C_SRC} ${GMX_SSEKERNEL_ASM_SRC} ${FORTRAN_SOURCES} ${GMX_BLUEGENE_C_SRC} ${GMX_PPC_ALTIVEC_SRC} ${THREAD_MPI_SRC})
-target_link_libraries(gmx ${GMX_EXTRA_LIBRARIES}  ${THREAD_LIB})
-if(USE_VERSION_H)
-       add_dependencies(gmx gmx_version) 
-endif()
-set_target_properties(gmx PROPERTIES OUTPUT_NAME "gmx${GMX_LIBS_SUFFIX}" SOVERSION ${SOVERSION} INSTALL_NAME_DIR "${LIB_INSTALL_DIR}")
-
-install(TARGETS gmx DESTINATION ${LIB_INSTALL_DIR} COMPONENT libraries)
-
-configure_file(${CMAKE_CURRENT_SOURCE_DIR}/libgmx.pc.cmakein ${CMAKE_CURRENT_BINARY_DIR}/libgmx.pc @ONLY)
-install(FILES ${CMAKE_CURRENT_BINARY_DIR}/libgmx.pc
-        DESTINATION ${LIB_INSTALL_DIR}/pkgconfig
-        RENAME "libgmx${GMX_LIBS_SUFFIX}.pc"
-        COMPONENT development)
-

diff --git a/src/gromacs/CMakeLists.txt b/src/gromacs/CMakeLists.txt
index 8996ec36680ff5359514938c448e95b27caea9ff..56aeadccfaf4ade8954a6982fcb4fb7a0721e63b 100644 (file)
--- a/src/gromacs/CMakeLists.txt
+++ b/src/gromacs/CMakeLists.txt
@@ -1,11 +1,63 @@
 add_subdirectory(legacyheaders)
+add_subdirectory(gmxlib)
 add_subdirectory(mdlib)
 
-set(LIBGROMACS_SOURCES ${MDLIB_SOURCES})
+# only fiddle with assembly kernels if we're not doing OpenMM build
+if(NOT GMX_OPENMM) 
+if(GMX_ASM_USEASM-NASM)
+  enable_language(ASM-NASM)
+  # if NASM is used, we need a special build command for windows...
+  FOREACH(SRC ${GMX_SSEKERNEL_ASM_SRC})
+    GET_FILENAME_COMPONENT(FILE_BASE ${SRC} NAME_WE)
+    SET(OBJ ${CMAKE_CURRENT_BINARY_DIR}/${FILE_BASE}${CMAKE_C_OUTPUT_EXTENSION})
+
+    ADD_CUSTOM_COMMAND(OUTPUT ${OBJ}
+                       MAIN_DEPENDENCY ${SRC}
+                       COMMAND ${CMAKE_ASM-NASM_COMPILER} -f ${CMAKE_ASM-NASM_OBJECT_FORMAT} -o ${OBJ} ${SRC})
+
+    SET(ALL_ASM_OBJS ${ALL_ASM_OBJS} ${OBJ})
+  ENDFOREACH(SRC ${GMX_SSEKERNEL_ASM_SRC})
+  set(GMX_SSEKERNEL_ASM_SRC ${ALL_ASM_OBJS})
+else(GMX_ASM_USEASM-NASM)
+  enable_language(ASM-ATT)
+  SET(CMAKE_ASM-ATT_COMPILER ${CMAKE_C_COMPILER})
+  if(GMX_IA32_ASM)
+    set_source_files_properties(${GMX_SSEKERNEL_ASM_SRC} PROPERTIES COMPILE_FLAGS "-c -m32")
+  else()
+    set_source_files_properties(${GMX_SSEKERNEL_ASM_SRC} PROPERTIES COMPILE_FLAGS "-c -m64")
+  endif()
+endif(GMX_ASM_USEASM-NASM)
+endif(NOT GMX_OPENMM)
+
+set(LIBGROMACS_SOURCES ${GMXLIB_SOURCES} ${GMX_SSEKERNEL_ASM_SRC} ${MDLIB_SOURCES})
+
+# add target that generates version.c every time a make is run
+# only do this if we generate the version
+if (USE_VERSION_H)
+    add_custom_target(gmx_version ALL
+            COMMAND ${CMAKE_COMMAND} 
+                -D Git_EXECUTABLE="${Git_EXECUTABLE}"
+                -D Git_VERSION="${Git_VERSION}"
+                -D PROJECT_VERSION="${PROJECT_VERSION}"
+                -D PROJECT_SOURCE_DIR="${PROJECT_SOURCE_DIR}"
+                -D VERSION_C_CMAKEIN="${CMAKE_CURRENT_SOURCE_DIR}/version.c.cmakein"
+                -D VERSION_C_OUT="${CMAKE_CURRENT_BINARY_DIR}/version.c"
+                -P ${CMAKE_SOURCE_DIR}/cmake/gmxGenerateVersionInfo.cmake 
+            WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}/src/gmxlib 
+            DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/version.c.cmakein
+            COMMENT "Generating version information")
+    list(APPEND LIBGROMACS_SOURCES ${CMAKE_CURRENT_BINARY_DIR}/version.c) # auto-generated
+    set_source_files_properties(${CMAKE_CURRENT_BINARY_DIR}/version.c 
+                                PROPERTIES GENERATED true)
+endif (USE_VERSION_H)
 
 add_library(libgromacs ${LIBGROMACS_SOURCES})
-target_link_libraries(libgromacs gmx
-                      ${GMX_EXTRA_LIBRARIES} ${FFT_LIBRARIES} ${XML_LIBRARIES})
+if (USE_VERSION_H)
+    add_dependencies(libgromacs gmx_version)
+endif (USE_VERSION_H)
+target_link_libraries(libgromacs
+                      ${GMX_EXTRA_LIBRARIES} ${FFT_LIBRARIES} ${XML_LIBRARIES}
+                      ${THREAD_LIB})
 set_target_properties(libgromacs PROPERTIES
                       OUTPUT_NAME "gromacs${GMX_LIBS_SUFFIX}"
                       SOVERSION ${SOVERSION}

diff --git a/src/gmxlib/3dview.c b/src/gromacs/gmxlib/3dview.c
similarity index 100%
rename from src/gmxlib/3dview.c
rename to src/gromacs/gmxlib/3dview.c

diff --git a/src/gromacs/gmxlib/CMakeLists.txt b/src/gromacs/gmxlib/CMakeLists.txt
new file mode 100644 (file)
index 0000000..ca25539
--- /dev/null
+++ b/src/gromacs/gmxlib/CMakeLists.txt
@@ -0,0 +1,85 @@
+include_directories(${CMAKE_CURRENT_SOURCE_DIR})
+
+# The nonbonded directory contains subdirectories that are only
+# conditionally built, so we cannot use a GLOB_RECURSE here.
+file(GLOB GMXLIB_SOURCES *.c 
+     selection/*.c trajana/*.c
+     statistics/*.c nonbonded/*.c nonbonded/nb_kernel_c/*.c)
+
+if(GMX_DOUBLE)
+  set(SSETYPE sse2)
+else()
+  set(SSETYPE sse)
+endif()
+
+if(GMX_IA32_ASM)
+  file(GLOB GMX_SSEKERNEL_C_SRC   nonbonded/nb_kernel_ia32_${SSETYPE}/*.c)
+  if(GMX_ASM_USEASM-NASM)
+    file(GLOB GMX_SSEKERNEL_ASM_SRC nonbonded/nb_kernel_ia32_${SSETYPE}/*intel_syntax*.s)    
+  else()
+    file(GLOB GMX_SSEKERNEL_ASM_SRC nonbonded/nb_kernel_ia32_${SSETYPE}/*${SSETYPE}.s nonbonded/nb_kernel_ia32_${SSETYPE}/*asm.s)
+  endif()
+endif(GMX_IA32_ASM)
+
+if(GMX_X86_64_ASM)
+  file(GLOB GMX_SSEKERNEL_C_SRC   nonbonded/nb_kernel_x86_64_${SSETYPE}/*.c)
+  if(GMX_ASM_USEASM-NASM)
+    file(GLOB GMX_SSEKERNEL_ASM_SRC nonbonded/nb_kernel_x86_64_${SSETYPE}/*intel_syntax*.s)
+  else()
+    file(GLOB GMX_SSEKERNEL_ASM_SRC nonbonded/nb_kernel_x86_64_${SSETYPE}/*${SSETYPE}.s nonbonded/nb_kernel_x86_64_${SSETYPE}/*asm.s)
+  endif()
+endif(GMX_X86_64_ASM)
+
+if(GMX_FORTRAN)
+  if (GMX_DOUBLE)
+    file(GLOB FORTRAN_SOURCES nonbonded/nb_kernel_f77_double/*.[cf])
+  else(GMX_DOUBLE)
+    file(GLOB FORTRAN_SOURCES nonbonded/nb_kernel_f77_single/*.[cf])
+  endif(GMX_DOUBLE)
+endif(GMX_FORTRAN)
+
+if(GMX_POWER6)
+  file(GLOB FORTRAN_SOURCES nonbonded/nb_kernel_power6/*.[cF])
+endif(GMX_POWER6)
+
+if(GMX_BLUEGENE)
+  file(GLOB GMX_BLUEGENE_C_SRC nonbonded/nb_kernel_bluegene/*.c)
+endif(GMX_BLUEGENE)
+
+if(GMX_PPC_ALTIVEC)
+  file(GLOB GMX_PPC_ALTIVEC_SRC nonbonded/nb_kernel_ppc_altivec/*.c)
+endif(GMX_PPC_ALTIVEC)
+
+if(NOT GMX_EXTERNAL_BLAS)
+  file(GLOB BLAS_SOURCES gmx_blas/*.c)
+endif(NOT GMX_EXTERNAL_BLAS)
+
+if(NOT GMX_EXTERNAL_LAPACK)
+  file(GLOB LAPACK_SOURCES gmx_lapack/*.c)
+endif(NOT GMX_EXTERNAL_LAPACK)
+
+# This would be the standard way to include thread_mpi, but we want libgmx
+# to link the functions directly
+#if(GMX_THREADS)
+#    add_subdirectory(thread_mpi)
+#endif(GMX_THREADS)
+#target_link_libraries(gmx ${GMX_EXTRA_LIBRARIES} ${THREAD_MPI_LIB})
+
+# Files called xxx_test.c are test drivers with a main() function for module xxx.c,
+# so they should not be included in the library
+file(GLOB_RECURSE NOT_GMXLIB_SOURCES *_test.c *\#*)
+list(REMOVE_ITEM GMXLIB_SOURCES ${NOT_GMXLIB_SOURCES})  
+# Selection has test_ instead of _test.  Removing here for special case, perhaps make general?
+if(GMX_FAHCORE)
+    file(GLOB SELECTION_TEST selection/test*)
+    list(REMOVE_ITEM GMXLIB_SOURCES ${SELECTION_TEST})
+endif(GMX_FAHCORE)
+
+# An ugly hack to get absolute paths...
+file(GLOB THREAD_MPI_SOURCES ${THREAD_MPI_SRC})
+
+set(GMX_SSEKERNEL_ASM_SRC ${GMX_SSEKERNEL_ASM_SRC} PARENT_SCOPE)
+set(GMXLIB_SOURCES ${GMXLIB_SOURCES} ${BLAS_SOURCES} ${LAPACK_SOURCES}
+    ${GMX_SSEKERNEL_C_SRC} ${FORTRAN_SOURCES}
+    ${GMX_BLUEGENE_C_SRC} ${GMX_PPC_ALTIVEC_SRC} ${THREAD_MPI_SOURCES}
+    PARENT_SCOPE)

diff --git a/src/gmxlib/atomprop.c b/src/gromacs/gmxlib/atomprop.c
similarity index 100%
rename from src/gmxlib/atomprop.c
rename to src/gromacs/gmxlib/atomprop.c

diff --git a/src/gmxlib/bfunc.h b/src/gromacs/gmxlib/bfunc.h
similarity index 100%
rename from src/gmxlib/bfunc.h
rename to src/gromacs/gmxlib/bfunc.h

diff --git a/src/gmxlib/bondfree.c b/src/gromacs/gmxlib/bondfree.c
similarity index 100%
rename from src/gmxlib/bondfree.c
rename to src/gromacs/gmxlib/bondfree.c

diff --git a/src/gmxlib/calcgrid.c b/src/gromacs/gmxlib/calcgrid.c
similarity index 100%
rename from src/gmxlib/calcgrid.c
rename to src/gromacs/gmxlib/calcgrid.c

diff --git a/src/gmxlib/calch.c b/src/gromacs/gmxlib/calch.c
similarity index 100%
rename from src/gmxlib/calch.c
rename to src/gromacs/gmxlib/calch.c

diff --git a/src/gmxlib/chargegroup.c b/src/gromacs/gmxlib/chargegroup.c
similarity index 100%
rename from src/gmxlib/chargegroup.c
rename to src/gromacs/gmxlib/chargegroup.c

diff --git a/src/gmxlib/checkpoint.c b/src/gromacs/gmxlib/checkpoint.c
similarity index 100%
rename from src/gmxlib/checkpoint.c
rename to src/gromacs/gmxlib/checkpoint.c

diff --git a/src/gmxlib/cinvsqrtdata.c b/src/gromacs/gmxlib/cinvsqrtdata.c
similarity index 100%
rename from src/gmxlib/cinvsqrtdata.c
rename to src/gromacs/gmxlib/cinvsqrtdata.c

diff --git a/src/gmxlib/confio.c b/src/gromacs/gmxlib/confio.c
similarity index 100%
rename from src/gmxlib/confio.c
rename to src/gromacs/gmxlib/confio.c

diff --git a/src/gmxlib/copyrite.c b/src/gromacs/gmxlib/copyrite.c
similarity index 100%
rename from src/gmxlib/copyrite.c
rename to src/gromacs/gmxlib/copyrite.c

diff --git a/src/gmxlib/crecipdata.c b/src/gromacs/gmxlib/crecipdata.c
similarity index 100%
rename from src/gmxlib/crecipdata.c
rename to src/gromacs/gmxlib/crecipdata.c

diff --git a/src/gmxlib/debugb.h b/src/gromacs/gmxlib/debugb.h
similarity index 100%
rename from src/gmxlib/debugb.h
rename to src/gromacs/gmxlib/debugb.h

diff --git a/src/gmxlib/dihres.c b/src/gromacs/gmxlib/dihres.c
similarity index 100%
rename from src/gmxlib/dihres.c
rename to src/gromacs/gmxlib/dihres.c

diff --git a/src/gmxlib/disre.c b/src/gromacs/gmxlib/disre.c
similarity index 100%
rename from src/gmxlib/disre.c
rename to src/gromacs/gmxlib/disre.c

diff --git a/src/gmxlib/dlb.h b/src/gromacs/gmxlib/dlb.h
similarity index 100%
rename from src/gmxlib/dlb.h
rename to src/gromacs/gmxlib/dlb.h

diff --git a/src/gmxlib/do_fit.c b/src/gromacs/gmxlib/do_fit.c
similarity index 100%
rename from src/gmxlib/do_fit.c
rename to src/gromacs/gmxlib/do_fit.c

diff --git a/src/gmxlib/enxio.c b/src/gromacs/gmxlib/enxio.c
similarity index 100%
rename from src/gmxlib/enxio.c
rename to src/gromacs/gmxlib/enxio.c

diff --git a/src/gmxlib/ewald_util.c b/src/gromacs/gmxlib/ewald_util.c
similarity index 100%
rename from src/gmxlib/ewald_util.c
rename to src/gromacs/gmxlib/ewald_util.c

diff --git a/src/gmxlib/ffscanf.c b/src/gromacs/gmxlib/ffscanf.c
similarity index 100%
rename from src/gmxlib/ffscanf.c
rename to src/gromacs/gmxlib/ffscanf.c

diff --git a/src/gmxlib/filenm.c b/src/gromacs/gmxlib/filenm.c
similarity index 100%
rename from src/gmxlib/filenm.c
rename to src/gromacs/gmxlib/filenm.c

diff --git a/src/gmxlib/futil.c b/src/gromacs/gmxlib/futil.c
similarity index 100%
rename from src/gmxlib/futil.c
rename to src/gromacs/gmxlib/futil.c

diff --git a/src/gmxlib/futil_test.c b/src/gromacs/gmxlib/futil_test.c
similarity index 100%
rename from src/gmxlib/futil_test.c
rename to src/gromacs/gmxlib/futil_test.c

diff --git a/src/gmxlib/gbutil.c b/src/gromacs/gmxlib/gbutil.c
similarity index 100%
rename from src/gmxlib/gbutil.c
rename to src/gromacs/gmxlib/gbutil.c

diff --git a/src/gmxlib/gmx_arpack.c b/src/gromacs/gmxlib/gmx_arpack.c
similarity index 100%
rename from src/gmxlib/gmx_arpack.c
rename to src/gromacs/gmxlib/gmx_arpack.c

diff --git a/src/gmxlib/gmx_blas/blas_copyright b/src/gromacs/gmxlib/gmx_blas/blas_copyright
similarity index 100%
rename from src/gmxlib/gmx_blas/blas_copyright
rename to src/gromacs/gmxlib/gmx_blas/blas_copyright

diff --git a/src/gmxlib/gmx_blas/dasum.c b/src/gromacs/gmxlib/gmx_blas/dasum.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dasum.c
rename to src/gromacs/gmxlib/gmx_blas/dasum.c

diff --git a/src/gmxlib/gmx_blas/daxpy.c b/src/gromacs/gmxlib/gmx_blas/daxpy.c
similarity index 100%
rename from src/gmxlib/gmx_blas/daxpy.c
rename to src/gromacs/gmxlib/gmx_blas/daxpy.c

diff --git a/src/gmxlib/gmx_blas/dcopy.c b/src/gromacs/gmxlib/gmx_blas/dcopy.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dcopy.c
rename to src/gromacs/gmxlib/gmx_blas/dcopy.c

diff --git a/src/gmxlib/gmx_blas/ddot.c b/src/gromacs/gmxlib/gmx_blas/ddot.c
similarity index 100%
rename from src/gmxlib/gmx_blas/ddot.c
rename to src/gromacs/gmxlib/gmx_blas/ddot.c

diff --git a/src/gmxlib/gmx_blas/dgemm.c b/src/gromacs/gmxlib/gmx_blas/dgemm.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dgemm.c
rename to src/gromacs/gmxlib/gmx_blas/dgemm.c

diff --git a/src/gmxlib/gmx_blas/dgemv.c b/src/gromacs/gmxlib/gmx_blas/dgemv.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dgemv.c
rename to src/gromacs/gmxlib/gmx_blas/dgemv.c

diff --git a/src/gmxlib/gmx_blas/dger.c b/src/gromacs/gmxlib/gmx_blas/dger.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dger.c
rename to src/gromacs/gmxlib/gmx_blas/dger.c

diff --git a/src/gmxlib/gmx_blas/dnrm2.c b/src/gromacs/gmxlib/gmx_blas/dnrm2.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dnrm2.c
rename to src/gromacs/gmxlib/gmx_blas/dnrm2.c

diff --git a/src/gmxlib/gmx_blas/drot.c b/src/gromacs/gmxlib/gmx_blas/drot.c
similarity index 100%
rename from src/gmxlib/gmx_blas/drot.c
rename to src/gromacs/gmxlib/gmx_blas/drot.c

diff --git a/src/gmxlib/gmx_blas/dscal.c b/src/gromacs/gmxlib/gmx_blas/dscal.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dscal.c
rename to src/gromacs/gmxlib/gmx_blas/dscal.c

diff --git a/src/gmxlib/gmx_blas/dswap.c b/src/gromacs/gmxlib/gmx_blas/dswap.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dswap.c
rename to src/gromacs/gmxlib/gmx_blas/dswap.c

diff --git a/src/gmxlib/gmx_blas/dsymv.c b/src/gromacs/gmxlib/gmx_blas/dsymv.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dsymv.c
rename to src/gromacs/gmxlib/gmx_blas/dsymv.c

diff --git a/src/gmxlib/gmx_blas/dsyr2.c b/src/gromacs/gmxlib/gmx_blas/dsyr2.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dsyr2.c
rename to src/gromacs/gmxlib/gmx_blas/dsyr2.c

diff --git a/src/gmxlib/gmx_blas/dsyr2k.c b/src/gromacs/gmxlib/gmx_blas/dsyr2k.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dsyr2k.c
rename to src/gromacs/gmxlib/gmx_blas/dsyr2k.c

diff --git a/src/gmxlib/gmx_blas/dtrmm.c b/src/gromacs/gmxlib/gmx_blas/dtrmm.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dtrmm.c
rename to src/gromacs/gmxlib/gmx_blas/dtrmm.c

diff --git a/src/gmxlib/gmx_blas/dtrmv.c b/src/gromacs/gmxlib/gmx_blas/dtrmv.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dtrmv.c
rename to src/gromacs/gmxlib/gmx_blas/dtrmv.c

diff --git a/src/gmxlib/gmx_blas/dtrsm.c b/src/gromacs/gmxlib/gmx_blas/dtrsm.c
similarity index 100%
rename from src/gmxlib/gmx_blas/dtrsm.c
rename to src/gromacs/gmxlib/gmx_blas/dtrsm.c

diff --git a/src/gmxlib/gmx_blas/idamax.c b/src/gromacs/gmxlib/gmx_blas/idamax.c
similarity index 100%
rename from src/gmxlib/gmx_blas/idamax.c
rename to src/gromacs/gmxlib/gmx_blas/idamax.c

diff --git a/src/gmxlib/gmx_blas/isamax.c b/src/gromacs/gmxlib/gmx_blas/isamax.c
similarity index 100%
rename from src/gmxlib/gmx_blas/isamax.c
rename to src/gromacs/gmxlib/gmx_blas/isamax.c

diff --git a/src/gmxlib/gmx_blas/sasum.c b/src/gromacs/gmxlib/gmx_blas/sasum.c
similarity index 100%
rename from src/gmxlib/gmx_blas/sasum.c
rename to src/gromacs/gmxlib/gmx_blas/sasum.c

diff --git a/src/gmxlib/gmx_blas/saxpy.c b/src/gromacs/gmxlib/gmx_blas/saxpy.c
similarity index 100%
rename from src/gmxlib/gmx_blas/saxpy.c
rename to src/gromacs/gmxlib/gmx_blas/saxpy.c

diff --git a/src/gmxlib/gmx_blas/scopy.c b/src/gromacs/gmxlib/gmx_blas/scopy.c
similarity index 100%
rename from src/gmxlib/gmx_blas/scopy.c
rename to src/gromacs/gmxlib/gmx_blas/scopy.c

diff --git a/src/gmxlib/gmx_blas/sdot.c b/src/gromacs/gmxlib/gmx_blas/sdot.c
similarity index 100%
rename from src/gmxlib/gmx_blas/sdot.c
rename to src/gromacs/gmxlib/gmx_blas/sdot.c

diff --git a/src/gmxlib/gmx_blas/sgemm.c b/src/gromacs/gmxlib/gmx_blas/sgemm.c
similarity index 100%
rename from src/gmxlib/gmx_blas/sgemm.c
rename to src/gromacs/gmxlib/gmx_blas/sgemm.c

diff --git a/src/gmxlib/gmx_blas/sgemv.c b/src/gromacs/gmxlib/gmx_blas/sgemv.c
similarity index 100%
rename from src/gmxlib/gmx_blas/sgemv.c
rename to src/gromacs/gmxlib/gmx_blas/sgemv.c

diff --git a/src/gmxlib/gmx_blas/sger.c b/src/gromacs/gmxlib/gmx_blas/sger.c
similarity index 100%
rename from src/gmxlib/gmx_blas/sger.c
rename to src/gromacs/gmxlib/gmx_blas/sger.c

diff --git a/src/gmxlib/gmx_blas/snrm2.c b/src/gromacs/gmxlib/gmx_blas/snrm2.c
similarity index 100%
rename from src/gmxlib/gmx_blas/snrm2.c
rename to src/gromacs/gmxlib/gmx_blas/snrm2.c

diff --git a/src/gmxlib/gmx_blas/srot.c b/src/gromacs/gmxlib/gmx_blas/srot.c
similarity index 100%
rename from src/gmxlib/gmx_blas/srot.c
rename to src/gromacs/gmxlib/gmx_blas/srot.c

diff --git a/src/gmxlib/gmx_blas/sscal.c b/src/gromacs/gmxlib/gmx_blas/sscal.c
similarity index 100%
rename from src/gmxlib/gmx_blas/sscal.c
rename to src/gromacs/gmxlib/gmx_blas/sscal.c

diff --git a/src/gmxlib/gmx_blas/sswap.c b/src/gromacs/gmxlib/gmx_blas/sswap.c
similarity index 100%
rename from src/gmxlib/gmx_blas/sswap.c
rename to src/gromacs/gmxlib/gmx_blas/sswap.c

diff --git a/src/gmxlib/gmx_blas/ssymv.c b/src/gromacs/gmxlib/gmx_blas/ssymv.c
similarity index 100%
rename from src/gmxlib/gmx_blas/ssymv.c
rename to src/gromacs/gmxlib/gmx_blas/ssymv.c

diff --git a/src/gmxlib/gmx_blas/ssyr2.c b/src/gromacs/gmxlib/gmx_blas/ssyr2.c
similarity index 100%
rename from src/gmxlib/gmx_blas/ssyr2.c
rename to src/gromacs/gmxlib/gmx_blas/ssyr2.c

diff --git a/src/gmxlib/gmx_blas/ssyr2k.c b/src/gromacs/gmxlib/gmx_blas/ssyr2k.c
similarity index 100%
rename from src/gmxlib/gmx_blas/ssyr2k.c
rename to src/gromacs/gmxlib/gmx_blas/ssyr2k.c

diff --git a/src/gmxlib/gmx_blas/strmm.c b/src/gromacs/gmxlib/gmx_blas/strmm.c
similarity index 100%
rename from src/gmxlib/gmx_blas/strmm.c
rename to src/gromacs/gmxlib/gmx_blas/strmm.c

diff --git a/src/gmxlib/gmx_blas/strmv.c b/src/gromacs/gmxlib/gmx_blas/strmv.c
similarity index 100%
rename from src/gmxlib/gmx_blas/strmv.c
rename to src/gromacs/gmxlib/gmx_blas/strmv.c

diff --git a/src/gmxlib/gmx_blas/strsm.c b/src/gromacs/gmxlib/gmx_blas/strsm.c
similarity index 100%
rename from src/gmxlib/gmx_blas/strsm.c
rename to src/gromacs/gmxlib/gmx_blas/strsm.c

diff --git a/src/gmxlib/gmx_cyclecounter.c b/src/gromacs/gmxlib/gmx_cyclecounter.c
similarity index 100%
rename from src/gmxlib/gmx_cyclecounter.c
rename to src/gromacs/gmxlib/gmx_cyclecounter.c

diff --git a/src/gmxlib/gmx_fatal.c b/src/gromacs/gmxlib/gmx_fatal.c
similarity index 100%
rename from src/gmxlib/gmx_fatal.c
rename to src/gromacs/gmxlib/gmx_fatal.c

diff --git a/src/gmxlib/gmx_lapack/dbdsdc.c b/src/gromacs/gmxlib/gmx_lapack/dbdsdc.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dbdsdc.c
rename to src/gromacs/gmxlib/gmx_lapack/dbdsdc.c

diff --git a/src/gmxlib/gmx_lapack/dbdsqr.c b/src/gromacs/gmxlib/gmx_lapack/dbdsqr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dbdsqr.c
rename to src/gromacs/gmxlib/gmx_lapack/dbdsqr.c

diff --git a/src/gmxlib/gmx_lapack/dgebd2.c b/src/gromacs/gmxlib/gmx_lapack/dgebd2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgebd2.c
rename to src/gromacs/gmxlib/gmx_lapack/dgebd2.c

diff --git a/src/gmxlib/gmx_lapack/dgebrd.c b/src/gromacs/gmxlib/gmx_lapack/dgebrd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgebrd.c
rename to src/gromacs/gmxlib/gmx_lapack/dgebrd.c

diff --git a/src/gmxlib/gmx_lapack/dgelq2.c b/src/gromacs/gmxlib/gmx_lapack/dgelq2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgelq2.c
rename to src/gromacs/gmxlib/gmx_lapack/dgelq2.c

diff --git a/src/gmxlib/gmx_lapack/dgelqf.c b/src/gromacs/gmxlib/gmx_lapack/dgelqf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgelqf.c
rename to src/gromacs/gmxlib/gmx_lapack/dgelqf.c

diff --git a/src/gmxlib/gmx_lapack/dgeqr2.c b/src/gromacs/gmxlib/gmx_lapack/dgeqr2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgeqr2.c
rename to src/gromacs/gmxlib/gmx_lapack/dgeqr2.c

diff --git a/src/gmxlib/gmx_lapack/dgeqrf.c b/src/gromacs/gmxlib/gmx_lapack/dgeqrf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgeqrf.c
rename to src/gromacs/gmxlib/gmx_lapack/dgeqrf.c

diff --git a/src/gmxlib/gmx_lapack/dgesdd.c b/src/gromacs/gmxlib/gmx_lapack/dgesdd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgesdd.c
rename to src/gromacs/gmxlib/gmx_lapack/dgesdd.c

diff --git a/src/gmxlib/gmx_lapack/dgetf2.c b/src/gromacs/gmxlib/gmx_lapack/dgetf2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgetf2.c
rename to src/gromacs/gmxlib/gmx_lapack/dgetf2.c

diff --git a/src/gmxlib/gmx_lapack/dgetrf.c b/src/gromacs/gmxlib/gmx_lapack/dgetrf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgetrf.c
rename to src/gromacs/gmxlib/gmx_lapack/dgetrf.c

diff --git a/src/gmxlib/gmx_lapack/dgetri.c b/src/gromacs/gmxlib/gmx_lapack/dgetri.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgetri.c
rename to src/gromacs/gmxlib/gmx_lapack/dgetri.c

diff --git a/src/gmxlib/gmx_lapack/dgetrs.c b/src/gromacs/gmxlib/gmx_lapack/dgetrs.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dgetrs.c
rename to src/gromacs/gmxlib/gmx_lapack/dgetrs.c

diff --git a/src/gmxlib/gmx_lapack/dlabrd.c b/src/gromacs/gmxlib/gmx_lapack/dlabrd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlabrd.c
rename to src/gromacs/gmxlib/gmx_lapack/dlabrd.c

diff --git a/src/gmxlib/gmx_lapack/dlacpy.c b/src/gromacs/gmxlib/gmx_lapack/dlacpy.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlacpy.c
rename to src/gromacs/gmxlib/gmx_lapack/dlacpy.c

diff --git a/src/gmxlib/gmx_lapack/dlae2.c b/src/gromacs/gmxlib/gmx_lapack/dlae2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlae2.c
rename to src/gromacs/gmxlib/gmx_lapack/dlae2.c

diff --git a/src/gmxlib/gmx_lapack/dlaebz.c b/src/gromacs/gmxlib/gmx_lapack/dlaebz.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlaebz.c
rename to src/gromacs/gmxlib/gmx_lapack/dlaebz.c

diff --git a/src/gmxlib/gmx_lapack/dlaed6.c b/src/gromacs/gmxlib/gmx_lapack/dlaed6.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlaed6.c
rename to src/gromacs/gmxlib/gmx_lapack/dlaed6.c

diff --git a/src/gmxlib/gmx_lapack/dlaev2.c b/src/gromacs/gmxlib/gmx_lapack/dlaev2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlaev2.c
rename to src/gromacs/gmxlib/gmx_lapack/dlaev2.c

diff --git a/src/gmxlib/gmx_lapack/dlagtf.c b/src/gromacs/gmxlib/gmx_lapack/dlagtf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlagtf.c
rename to src/gromacs/gmxlib/gmx_lapack/dlagtf.c

diff --git a/src/gmxlib/gmx_lapack/dlagts.c b/src/gromacs/gmxlib/gmx_lapack/dlagts.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlagts.c
rename to src/gromacs/gmxlib/gmx_lapack/dlagts.c

diff --git a/src/gmxlib/gmx_lapack/dlamrg.c b/src/gromacs/gmxlib/gmx_lapack/dlamrg.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlamrg.c
rename to src/gromacs/gmxlib/gmx_lapack/dlamrg.c

diff --git a/src/gmxlib/gmx_lapack/dlange.c b/src/gromacs/gmxlib/gmx_lapack/dlange.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlange.c
rename to src/gromacs/gmxlib/gmx_lapack/dlange.c

diff --git a/src/gmxlib/gmx_lapack/dlanst.c b/src/gromacs/gmxlib/gmx_lapack/dlanst.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlanst.c
rename to src/gromacs/gmxlib/gmx_lapack/dlanst.c

diff --git a/src/gmxlib/gmx_lapack/dlansy.c b/src/gromacs/gmxlib/gmx_lapack/dlansy.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlansy.c
rename to src/gromacs/gmxlib/gmx_lapack/dlansy.c

diff --git a/src/gmxlib/gmx_lapack/dlapy2.c b/src/gromacs/gmxlib/gmx_lapack/dlapy2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlapy2.c
rename to src/gromacs/gmxlib/gmx_lapack/dlapy2.c

diff --git a/src/gmxlib/gmx_lapack/dlar1vx.c b/src/gromacs/gmxlib/gmx_lapack/dlar1vx.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlar1vx.c
rename to src/gromacs/gmxlib/gmx_lapack/dlar1vx.c

diff --git a/src/gmxlib/gmx_lapack/dlarf.c b/src/gromacs/gmxlib/gmx_lapack/dlarf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlarf.c
rename to src/gromacs/gmxlib/gmx_lapack/dlarf.c

diff --git a/src/gmxlib/gmx_lapack/dlarfb.c b/src/gromacs/gmxlib/gmx_lapack/dlarfb.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlarfb.c
rename to src/gromacs/gmxlib/gmx_lapack/dlarfb.c

diff --git a/src/gmxlib/gmx_lapack/dlarfg.c b/src/gromacs/gmxlib/gmx_lapack/dlarfg.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlarfg.c
rename to src/gromacs/gmxlib/gmx_lapack/dlarfg.c

diff --git a/src/gmxlib/gmx_lapack/dlarft.c b/src/gromacs/gmxlib/gmx_lapack/dlarft.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlarft.c
rename to src/gromacs/gmxlib/gmx_lapack/dlarft.c

diff --git a/src/gmxlib/gmx_lapack/dlarnv.c b/src/gromacs/gmxlib/gmx_lapack/dlarnv.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlarnv.c
rename to src/gromacs/gmxlib/gmx_lapack/dlarnv.c

diff --git a/src/gmxlib/gmx_lapack/dlarrbx.c b/src/gromacs/gmxlib/gmx_lapack/dlarrbx.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlarrbx.c
rename to src/gromacs/gmxlib/gmx_lapack/dlarrbx.c

diff --git a/src/gmxlib/gmx_lapack/dlarrex.c b/src/gromacs/gmxlib/gmx_lapack/dlarrex.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlarrex.c
rename to src/gromacs/gmxlib/gmx_lapack/dlarrex.c

diff --git a/src/gmxlib/gmx_lapack/dlarrfx.c b/src/gromacs/gmxlib/gmx_lapack/dlarrfx.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlarrfx.c
rename to src/gromacs/gmxlib/gmx_lapack/dlarrfx.c

diff --git a/src/gmxlib/gmx_lapack/dlarrvx.c b/src/gromacs/gmxlib/gmx_lapack/dlarrvx.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlarrvx.c
rename to src/gromacs/gmxlib/gmx_lapack/dlarrvx.c

diff --git a/src/gmxlib/gmx_lapack/dlartg.c b/src/gromacs/gmxlib/gmx_lapack/dlartg.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlartg.c
rename to src/gromacs/gmxlib/gmx_lapack/dlartg.c

diff --git a/src/gmxlib/gmx_lapack/dlaruv.c b/src/gromacs/gmxlib/gmx_lapack/dlaruv.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlaruv.c
rename to src/gromacs/gmxlib/gmx_lapack/dlaruv.c

diff --git a/src/gmxlib/gmx_lapack/dlas2.c b/src/gromacs/gmxlib/gmx_lapack/dlas2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlas2.c
rename to src/gromacs/gmxlib/gmx_lapack/dlas2.c

diff --git a/src/gmxlib/gmx_lapack/dlascl.c b/src/gromacs/gmxlib/gmx_lapack/dlascl.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlascl.c
rename to src/gromacs/gmxlib/gmx_lapack/dlascl.c

diff --git a/src/gmxlib/gmx_lapack/dlasd0.c b/src/gromacs/gmxlib/gmx_lapack/dlasd0.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasd0.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasd0.c

diff --git a/src/gmxlib/gmx_lapack/dlasd1.c b/src/gromacs/gmxlib/gmx_lapack/dlasd1.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasd1.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasd1.c

diff --git a/src/gmxlib/gmx_lapack/dlasd2.c b/src/gromacs/gmxlib/gmx_lapack/dlasd2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasd2.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasd2.c

diff --git a/src/gmxlib/gmx_lapack/dlasd3.c b/src/gromacs/gmxlib/gmx_lapack/dlasd3.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasd3.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasd3.c

diff --git a/src/gmxlib/gmx_lapack/dlasd4.c b/src/gromacs/gmxlib/gmx_lapack/dlasd4.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasd4.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasd4.c

diff --git a/src/gmxlib/gmx_lapack/dlasd5.c b/src/gromacs/gmxlib/gmx_lapack/dlasd5.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasd5.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasd5.c

diff --git a/src/gmxlib/gmx_lapack/dlasd6.c b/src/gromacs/gmxlib/gmx_lapack/dlasd6.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasd6.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasd6.c

diff --git a/src/gmxlib/gmx_lapack/dlasd7.c b/src/gromacs/gmxlib/gmx_lapack/dlasd7.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasd7.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasd7.c

diff --git a/src/gmxlib/gmx_lapack/dlasd8.c b/src/gromacs/gmxlib/gmx_lapack/dlasd8.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasd8.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasd8.c

diff --git a/src/gmxlib/gmx_lapack/dlasda.c b/src/gromacs/gmxlib/gmx_lapack/dlasda.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasda.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasda.c

diff --git a/src/gmxlib/gmx_lapack/dlasdq.c b/src/gromacs/gmxlib/gmx_lapack/dlasdq.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasdq.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasdq.c

diff --git a/src/gmxlib/gmx_lapack/dlasdt.c b/src/gromacs/gmxlib/gmx_lapack/dlasdt.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasdt.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasdt.c

diff --git a/src/gmxlib/gmx_lapack/dlaset.c b/src/gromacs/gmxlib/gmx_lapack/dlaset.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlaset.c
rename to src/gromacs/gmxlib/gmx_lapack/dlaset.c

diff --git a/src/gmxlib/gmx_lapack/dlasq1.c b/src/gromacs/gmxlib/gmx_lapack/dlasq1.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasq1.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasq1.c

diff --git a/src/gmxlib/gmx_lapack/dlasq2.c b/src/gromacs/gmxlib/gmx_lapack/dlasq2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasq2.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasq2.c

diff --git a/src/gmxlib/gmx_lapack/dlasq3.c b/src/gromacs/gmxlib/gmx_lapack/dlasq3.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasq3.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasq3.c

diff --git a/src/gmxlib/gmx_lapack/dlasq4.c b/src/gromacs/gmxlib/gmx_lapack/dlasq4.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasq4.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasq4.c

diff --git a/src/gmxlib/gmx_lapack/dlasq5.c b/src/gromacs/gmxlib/gmx_lapack/dlasq5.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasq5.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasq5.c

diff --git a/src/gmxlib/gmx_lapack/dlasq6.c b/src/gromacs/gmxlib/gmx_lapack/dlasq6.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasq6.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasq6.c

diff --git a/src/gmxlib/gmx_lapack/dlasr.c b/src/gromacs/gmxlib/gmx_lapack/dlasr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasr.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasr.c

diff --git a/src/gmxlib/gmx_lapack/dlasrt.c b/src/gromacs/gmxlib/gmx_lapack/dlasrt.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasrt.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasrt.c

diff --git a/src/gmxlib/gmx_lapack/dlasrt2.c b/src/gromacs/gmxlib/gmx_lapack/dlasrt2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasrt2.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasrt2.c

diff --git a/src/gmxlib/gmx_lapack/dlassq.c b/src/gromacs/gmxlib/gmx_lapack/dlassq.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlassq.c
rename to src/gromacs/gmxlib/gmx_lapack/dlassq.c

diff --git a/src/gmxlib/gmx_lapack/dlasv2.c b/src/gromacs/gmxlib/gmx_lapack/dlasv2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlasv2.c
rename to src/gromacs/gmxlib/gmx_lapack/dlasv2.c

diff --git a/src/gmxlib/gmx_lapack/dlaswp.c b/src/gromacs/gmxlib/gmx_lapack/dlaswp.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlaswp.c
rename to src/gromacs/gmxlib/gmx_lapack/dlaswp.c

diff --git a/src/gmxlib/gmx_lapack/dlatrd.c b/src/gromacs/gmxlib/gmx_lapack/dlatrd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dlatrd.c
rename to src/gromacs/gmxlib/gmx_lapack/dlatrd.c

diff --git a/src/gmxlib/gmx_lapack/dorg2r.c b/src/gromacs/gmxlib/gmx_lapack/dorg2r.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dorg2r.c
rename to src/gromacs/gmxlib/gmx_lapack/dorg2r.c

diff --git a/src/gmxlib/gmx_lapack/dorgbr.c b/src/gromacs/gmxlib/gmx_lapack/dorgbr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dorgbr.c
rename to src/gromacs/gmxlib/gmx_lapack/dorgbr.c

diff --git a/src/gmxlib/gmx_lapack/dorgl2.c b/src/gromacs/gmxlib/gmx_lapack/dorgl2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dorgl2.c
rename to src/gromacs/gmxlib/gmx_lapack/dorgl2.c

diff --git a/src/gmxlib/gmx_lapack/dorglq.c b/src/gromacs/gmxlib/gmx_lapack/dorglq.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dorglq.c
rename to src/gromacs/gmxlib/gmx_lapack/dorglq.c

diff --git a/src/gmxlib/gmx_lapack/dorgqr.c b/src/gromacs/gmxlib/gmx_lapack/dorgqr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dorgqr.c
rename to src/gromacs/gmxlib/gmx_lapack/dorgqr.c

diff --git a/src/gmxlib/gmx_lapack/dorm2l.c b/src/gromacs/gmxlib/gmx_lapack/dorm2l.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dorm2l.c
rename to src/gromacs/gmxlib/gmx_lapack/dorm2l.c

diff --git a/src/gmxlib/gmx_lapack/dorm2r.c b/src/gromacs/gmxlib/gmx_lapack/dorm2r.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dorm2r.c
rename to src/gromacs/gmxlib/gmx_lapack/dorm2r.c

diff --git a/src/gmxlib/gmx_lapack/dormbr.c b/src/gromacs/gmxlib/gmx_lapack/dormbr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dormbr.c
rename to src/gromacs/gmxlib/gmx_lapack/dormbr.c

diff --git a/src/gmxlib/gmx_lapack/dorml2.c b/src/gromacs/gmxlib/gmx_lapack/dorml2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dorml2.c
rename to src/gromacs/gmxlib/gmx_lapack/dorml2.c

diff --git a/src/gmxlib/gmx_lapack/dormlq.c b/src/gromacs/gmxlib/gmx_lapack/dormlq.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dormlq.c
rename to src/gromacs/gmxlib/gmx_lapack/dormlq.c

diff --git a/src/gmxlib/gmx_lapack/dormql.c b/src/gromacs/gmxlib/gmx_lapack/dormql.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dormql.c
rename to src/gromacs/gmxlib/gmx_lapack/dormql.c

diff --git a/src/gmxlib/gmx_lapack/dormqr.c b/src/gromacs/gmxlib/gmx_lapack/dormqr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dormqr.c
rename to src/gromacs/gmxlib/gmx_lapack/dormqr.c

diff --git a/src/gmxlib/gmx_lapack/dormtr.c b/src/gromacs/gmxlib/gmx_lapack/dormtr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dormtr.c
rename to src/gromacs/gmxlib/gmx_lapack/dormtr.c

diff --git a/src/gmxlib/gmx_lapack/dstebz.c b/src/gromacs/gmxlib/gmx_lapack/dstebz.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dstebz.c
rename to src/gromacs/gmxlib/gmx_lapack/dstebz.c

diff --git a/src/gmxlib/gmx_lapack/dstegr.c b/src/gromacs/gmxlib/gmx_lapack/dstegr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dstegr.c
rename to src/gromacs/gmxlib/gmx_lapack/dstegr.c

diff --git a/src/gmxlib/gmx_lapack/dstein.c b/src/gromacs/gmxlib/gmx_lapack/dstein.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dstein.c
rename to src/gromacs/gmxlib/gmx_lapack/dstein.c

diff --git a/src/gmxlib/gmx_lapack/dsteqr.c b/src/gromacs/gmxlib/gmx_lapack/dsteqr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dsteqr.c
rename to src/gromacs/gmxlib/gmx_lapack/dsteqr.c

diff --git a/src/gmxlib/gmx_lapack/dsterf.c b/src/gromacs/gmxlib/gmx_lapack/dsterf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dsterf.c
rename to src/gromacs/gmxlib/gmx_lapack/dsterf.c

diff --git a/src/gmxlib/gmx_lapack/dstevr.c b/src/gromacs/gmxlib/gmx_lapack/dstevr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dstevr.c
rename to src/gromacs/gmxlib/gmx_lapack/dstevr.c

diff --git a/src/gmxlib/gmx_lapack/dsyevr.c b/src/gromacs/gmxlib/gmx_lapack/dsyevr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dsyevr.c
rename to src/gromacs/gmxlib/gmx_lapack/dsyevr.c

diff --git a/src/gmxlib/gmx_lapack/dsytd2.c b/src/gromacs/gmxlib/gmx_lapack/dsytd2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dsytd2.c
rename to src/gromacs/gmxlib/gmx_lapack/dsytd2.c

diff --git a/src/gmxlib/gmx_lapack/dsytrd.c b/src/gromacs/gmxlib/gmx_lapack/dsytrd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dsytrd.c
rename to src/gromacs/gmxlib/gmx_lapack/dsytrd.c

diff --git a/src/gmxlib/gmx_lapack/dtrti2.c b/src/gromacs/gmxlib/gmx_lapack/dtrti2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dtrti2.c
rename to src/gromacs/gmxlib/gmx_lapack/dtrti2.c

diff --git a/src/gmxlib/gmx_lapack/dtrtri.c b/src/gromacs/gmxlib/gmx_lapack/dtrtri.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/dtrtri.c
rename to src/gromacs/gmxlib/gmx_lapack/dtrtri.c

diff --git a/src/gmxlib/gmx_lapack/ilasrt2.c b/src/gromacs/gmxlib/gmx_lapack/ilasrt2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/ilasrt2.c
rename to src/gromacs/gmxlib/gmx_lapack/ilasrt2.c

diff --git a/src/gmxlib/gmx_lapack/lapack_copyright b/src/gromacs/gmxlib/gmx_lapack/lapack_copyright
similarity index 100%
rename from src/gmxlib/gmx_lapack/lapack_copyright
rename to src/gromacs/gmxlib/gmx_lapack/lapack_copyright

diff --git a/src/gmxlib/gmx_lapack/lapack_limits.h b/src/gromacs/gmxlib/gmx_lapack/lapack_limits.h
similarity index 100%
rename from src/gmxlib/gmx_lapack/lapack_limits.h
rename to src/gromacs/gmxlib/gmx_lapack/lapack_limits.h

diff --git a/src/gmxlib/gmx_lapack/sbdsdc.c b/src/gromacs/gmxlib/gmx_lapack/sbdsdc.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sbdsdc.c
rename to src/gromacs/gmxlib/gmx_lapack/sbdsdc.c

diff --git a/src/gmxlib/gmx_lapack/sbdsqr.c b/src/gromacs/gmxlib/gmx_lapack/sbdsqr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sbdsqr.c
rename to src/gromacs/gmxlib/gmx_lapack/sbdsqr.c

diff --git a/src/gmxlib/gmx_lapack/sgebd2.c b/src/gromacs/gmxlib/gmx_lapack/sgebd2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgebd2.c
rename to src/gromacs/gmxlib/gmx_lapack/sgebd2.c

diff --git a/src/gmxlib/gmx_lapack/sgebrd.c b/src/gromacs/gmxlib/gmx_lapack/sgebrd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgebrd.c
rename to src/gromacs/gmxlib/gmx_lapack/sgebrd.c

diff --git a/src/gmxlib/gmx_lapack/sgelq2.c b/src/gromacs/gmxlib/gmx_lapack/sgelq2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgelq2.c
rename to src/gromacs/gmxlib/gmx_lapack/sgelq2.c

diff --git a/src/gmxlib/gmx_lapack/sgelqf.c b/src/gromacs/gmxlib/gmx_lapack/sgelqf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgelqf.c
rename to src/gromacs/gmxlib/gmx_lapack/sgelqf.c

diff --git a/src/gmxlib/gmx_lapack/sgeqr2.c b/src/gromacs/gmxlib/gmx_lapack/sgeqr2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgeqr2.c
rename to src/gromacs/gmxlib/gmx_lapack/sgeqr2.c

diff --git a/src/gmxlib/gmx_lapack/sgeqrf.c b/src/gromacs/gmxlib/gmx_lapack/sgeqrf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgeqrf.c
rename to src/gromacs/gmxlib/gmx_lapack/sgeqrf.c

diff --git a/src/gmxlib/gmx_lapack/sgesdd.c b/src/gromacs/gmxlib/gmx_lapack/sgesdd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgesdd.c
rename to src/gromacs/gmxlib/gmx_lapack/sgesdd.c

diff --git a/src/gmxlib/gmx_lapack/sgetf2.c b/src/gromacs/gmxlib/gmx_lapack/sgetf2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgetf2.c
rename to src/gromacs/gmxlib/gmx_lapack/sgetf2.c

diff --git a/src/gmxlib/gmx_lapack/sgetrf.c b/src/gromacs/gmxlib/gmx_lapack/sgetrf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgetrf.c
rename to src/gromacs/gmxlib/gmx_lapack/sgetrf.c

diff --git a/src/gmxlib/gmx_lapack/sgetri.c b/src/gromacs/gmxlib/gmx_lapack/sgetri.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgetri.c
rename to src/gromacs/gmxlib/gmx_lapack/sgetri.c

diff --git a/src/gmxlib/gmx_lapack/sgetrs.c b/src/gromacs/gmxlib/gmx_lapack/sgetrs.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sgetrs.c
rename to src/gromacs/gmxlib/gmx_lapack/sgetrs.c

diff --git a/src/gmxlib/gmx_lapack/slabrd.c b/src/gromacs/gmxlib/gmx_lapack/slabrd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slabrd.c
rename to src/gromacs/gmxlib/gmx_lapack/slabrd.c

diff --git a/src/gmxlib/gmx_lapack/slacpy.c b/src/gromacs/gmxlib/gmx_lapack/slacpy.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slacpy.c
rename to src/gromacs/gmxlib/gmx_lapack/slacpy.c

diff --git a/src/gmxlib/gmx_lapack/slae2.c b/src/gromacs/gmxlib/gmx_lapack/slae2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slae2.c
rename to src/gromacs/gmxlib/gmx_lapack/slae2.c

diff --git a/src/gmxlib/gmx_lapack/slaebz.c b/src/gromacs/gmxlib/gmx_lapack/slaebz.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slaebz.c
rename to src/gromacs/gmxlib/gmx_lapack/slaebz.c

diff --git a/src/gmxlib/gmx_lapack/slaed6.c b/src/gromacs/gmxlib/gmx_lapack/slaed6.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slaed6.c
rename to src/gromacs/gmxlib/gmx_lapack/slaed6.c

diff --git a/src/gmxlib/gmx_lapack/slaev2.c b/src/gromacs/gmxlib/gmx_lapack/slaev2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slaev2.c
rename to src/gromacs/gmxlib/gmx_lapack/slaev2.c

diff --git a/src/gmxlib/gmx_lapack/slagtf.c b/src/gromacs/gmxlib/gmx_lapack/slagtf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slagtf.c
rename to src/gromacs/gmxlib/gmx_lapack/slagtf.c

diff --git a/src/gmxlib/gmx_lapack/slagts.c b/src/gromacs/gmxlib/gmx_lapack/slagts.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slagts.c
rename to src/gromacs/gmxlib/gmx_lapack/slagts.c

diff --git a/src/gmxlib/gmx_lapack/slamrg.c b/src/gromacs/gmxlib/gmx_lapack/slamrg.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slamrg.c
rename to src/gromacs/gmxlib/gmx_lapack/slamrg.c

diff --git a/src/gmxlib/gmx_lapack/slange.c b/src/gromacs/gmxlib/gmx_lapack/slange.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slange.c
rename to src/gromacs/gmxlib/gmx_lapack/slange.c

diff --git a/src/gmxlib/gmx_lapack/slanst.c b/src/gromacs/gmxlib/gmx_lapack/slanst.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slanst.c
rename to src/gromacs/gmxlib/gmx_lapack/slanst.c

diff --git a/src/gmxlib/gmx_lapack/slansy.c b/src/gromacs/gmxlib/gmx_lapack/slansy.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slansy.c
rename to src/gromacs/gmxlib/gmx_lapack/slansy.c

diff --git a/src/gmxlib/gmx_lapack/slapy2.c b/src/gromacs/gmxlib/gmx_lapack/slapy2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slapy2.c
rename to src/gromacs/gmxlib/gmx_lapack/slapy2.c

diff --git a/src/gmxlib/gmx_lapack/slar1vx.c b/src/gromacs/gmxlib/gmx_lapack/slar1vx.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slar1vx.c
rename to src/gromacs/gmxlib/gmx_lapack/slar1vx.c

diff --git a/src/gmxlib/gmx_lapack/slarf.c b/src/gromacs/gmxlib/gmx_lapack/slarf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slarf.c
rename to src/gromacs/gmxlib/gmx_lapack/slarf.c

diff --git a/src/gmxlib/gmx_lapack/slarfb.c b/src/gromacs/gmxlib/gmx_lapack/slarfb.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slarfb.c
rename to src/gromacs/gmxlib/gmx_lapack/slarfb.c

diff --git a/src/gmxlib/gmx_lapack/slarfg.c b/src/gromacs/gmxlib/gmx_lapack/slarfg.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slarfg.c
rename to src/gromacs/gmxlib/gmx_lapack/slarfg.c

diff --git a/src/gmxlib/gmx_lapack/slarft.c b/src/gromacs/gmxlib/gmx_lapack/slarft.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slarft.c
rename to src/gromacs/gmxlib/gmx_lapack/slarft.c

diff --git a/src/gmxlib/gmx_lapack/slarnv.c b/src/gromacs/gmxlib/gmx_lapack/slarnv.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slarnv.c
rename to src/gromacs/gmxlib/gmx_lapack/slarnv.c

diff --git a/src/gmxlib/gmx_lapack/slarrbx.c b/src/gromacs/gmxlib/gmx_lapack/slarrbx.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slarrbx.c
rename to src/gromacs/gmxlib/gmx_lapack/slarrbx.c

diff --git a/src/gmxlib/gmx_lapack/slarrex.c b/src/gromacs/gmxlib/gmx_lapack/slarrex.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slarrex.c
rename to src/gromacs/gmxlib/gmx_lapack/slarrex.c

diff --git a/src/gmxlib/gmx_lapack/slarrfx.c b/src/gromacs/gmxlib/gmx_lapack/slarrfx.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slarrfx.c
rename to src/gromacs/gmxlib/gmx_lapack/slarrfx.c

diff --git a/src/gmxlib/gmx_lapack/slarrvx.c b/src/gromacs/gmxlib/gmx_lapack/slarrvx.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slarrvx.c
rename to src/gromacs/gmxlib/gmx_lapack/slarrvx.c

diff --git a/src/gmxlib/gmx_lapack/slartg.c b/src/gromacs/gmxlib/gmx_lapack/slartg.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slartg.c
rename to src/gromacs/gmxlib/gmx_lapack/slartg.c

diff --git a/src/gmxlib/gmx_lapack/slaruv.c b/src/gromacs/gmxlib/gmx_lapack/slaruv.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slaruv.c
rename to src/gromacs/gmxlib/gmx_lapack/slaruv.c

diff --git a/src/gmxlib/gmx_lapack/slas2.c b/src/gromacs/gmxlib/gmx_lapack/slas2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slas2.c
rename to src/gromacs/gmxlib/gmx_lapack/slas2.c

diff --git a/src/gmxlib/gmx_lapack/slascl.c b/src/gromacs/gmxlib/gmx_lapack/slascl.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slascl.c
rename to src/gromacs/gmxlib/gmx_lapack/slascl.c

diff --git a/src/gmxlib/gmx_lapack/slasd0.c b/src/gromacs/gmxlib/gmx_lapack/slasd0.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasd0.c
rename to src/gromacs/gmxlib/gmx_lapack/slasd0.c

diff --git a/src/gmxlib/gmx_lapack/slasd1.c b/src/gromacs/gmxlib/gmx_lapack/slasd1.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasd1.c
rename to src/gromacs/gmxlib/gmx_lapack/slasd1.c

diff --git a/src/gmxlib/gmx_lapack/slasd2.c b/src/gromacs/gmxlib/gmx_lapack/slasd2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasd2.c
rename to src/gromacs/gmxlib/gmx_lapack/slasd2.c

diff --git a/src/gmxlib/gmx_lapack/slasd3.c b/src/gromacs/gmxlib/gmx_lapack/slasd3.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasd3.c
rename to src/gromacs/gmxlib/gmx_lapack/slasd3.c

diff --git a/src/gmxlib/gmx_lapack/slasd4.c b/src/gromacs/gmxlib/gmx_lapack/slasd4.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasd4.c
rename to src/gromacs/gmxlib/gmx_lapack/slasd4.c

diff --git a/src/gmxlib/gmx_lapack/slasd5.c b/src/gromacs/gmxlib/gmx_lapack/slasd5.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasd5.c
rename to src/gromacs/gmxlib/gmx_lapack/slasd5.c

diff --git a/src/gmxlib/gmx_lapack/slasd6.c b/src/gromacs/gmxlib/gmx_lapack/slasd6.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasd6.c
rename to src/gromacs/gmxlib/gmx_lapack/slasd6.c

diff --git a/src/gmxlib/gmx_lapack/slasd7.c b/src/gromacs/gmxlib/gmx_lapack/slasd7.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasd7.c
rename to src/gromacs/gmxlib/gmx_lapack/slasd7.c

diff --git a/src/gmxlib/gmx_lapack/slasd8.c b/src/gromacs/gmxlib/gmx_lapack/slasd8.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasd8.c
rename to src/gromacs/gmxlib/gmx_lapack/slasd8.c

diff --git a/src/gmxlib/gmx_lapack/slasda.c b/src/gromacs/gmxlib/gmx_lapack/slasda.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasda.c
rename to src/gromacs/gmxlib/gmx_lapack/slasda.c

diff --git a/src/gmxlib/gmx_lapack/slasdq.c b/src/gromacs/gmxlib/gmx_lapack/slasdq.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasdq.c
rename to src/gromacs/gmxlib/gmx_lapack/slasdq.c

diff --git a/src/gmxlib/gmx_lapack/slasdt.c b/src/gromacs/gmxlib/gmx_lapack/slasdt.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasdt.c
rename to src/gromacs/gmxlib/gmx_lapack/slasdt.c

diff --git a/src/gmxlib/gmx_lapack/slaset.c b/src/gromacs/gmxlib/gmx_lapack/slaset.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slaset.c
rename to src/gromacs/gmxlib/gmx_lapack/slaset.c

diff --git a/src/gmxlib/gmx_lapack/slasq1.c b/src/gromacs/gmxlib/gmx_lapack/slasq1.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasq1.c
rename to src/gromacs/gmxlib/gmx_lapack/slasq1.c

diff --git a/src/gmxlib/gmx_lapack/slasq2.c b/src/gromacs/gmxlib/gmx_lapack/slasq2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasq2.c
rename to src/gromacs/gmxlib/gmx_lapack/slasq2.c

diff --git a/src/gmxlib/gmx_lapack/slasq3.c b/src/gromacs/gmxlib/gmx_lapack/slasq3.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasq3.c
rename to src/gromacs/gmxlib/gmx_lapack/slasq3.c

diff --git a/src/gmxlib/gmx_lapack/slasq4.c b/src/gromacs/gmxlib/gmx_lapack/slasq4.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasq4.c
rename to src/gromacs/gmxlib/gmx_lapack/slasq4.c

diff --git a/src/gmxlib/gmx_lapack/slasq5.c b/src/gromacs/gmxlib/gmx_lapack/slasq5.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasq5.c
rename to src/gromacs/gmxlib/gmx_lapack/slasq5.c

diff --git a/src/gmxlib/gmx_lapack/slasq6.c b/src/gromacs/gmxlib/gmx_lapack/slasq6.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasq6.c
rename to src/gromacs/gmxlib/gmx_lapack/slasq6.c

diff --git a/src/gmxlib/gmx_lapack/slasr.c b/src/gromacs/gmxlib/gmx_lapack/slasr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasr.c
rename to src/gromacs/gmxlib/gmx_lapack/slasr.c

diff --git a/src/gmxlib/gmx_lapack/slasrt.c b/src/gromacs/gmxlib/gmx_lapack/slasrt.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasrt.c
rename to src/gromacs/gmxlib/gmx_lapack/slasrt.c

diff --git a/src/gmxlib/gmx_lapack/slasrt2.c b/src/gromacs/gmxlib/gmx_lapack/slasrt2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasrt2.c
rename to src/gromacs/gmxlib/gmx_lapack/slasrt2.c

diff --git a/src/gmxlib/gmx_lapack/slassq.c b/src/gromacs/gmxlib/gmx_lapack/slassq.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slassq.c
rename to src/gromacs/gmxlib/gmx_lapack/slassq.c

diff --git a/src/gmxlib/gmx_lapack/slasv2.c b/src/gromacs/gmxlib/gmx_lapack/slasv2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slasv2.c
rename to src/gromacs/gmxlib/gmx_lapack/slasv2.c

diff --git a/src/gmxlib/gmx_lapack/slaswp.c b/src/gromacs/gmxlib/gmx_lapack/slaswp.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slaswp.c
rename to src/gromacs/gmxlib/gmx_lapack/slaswp.c

diff --git a/src/gmxlib/gmx_lapack/slatrd.c b/src/gromacs/gmxlib/gmx_lapack/slatrd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/slatrd.c
rename to src/gromacs/gmxlib/gmx_lapack/slatrd.c

diff --git a/src/gmxlib/gmx_lapack/sorg2r.c b/src/gromacs/gmxlib/gmx_lapack/sorg2r.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sorg2r.c
rename to src/gromacs/gmxlib/gmx_lapack/sorg2r.c

diff --git a/src/gmxlib/gmx_lapack/sorgbr.c b/src/gromacs/gmxlib/gmx_lapack/sorgbr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sorgbr.c
rename to src/gromacs/gmxlib/gmx_lapack/sorgbr.c

diff --git a/src/gmxlib/gmx_lapack/sorgl2.c b/src/gromacs/gmxlib/gmx_lapack/sorgl2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sorgl2.c
rename to src/gromacs/gmxlib/gmx_lapack/sorgl2.c

diff --git a/src/gmxlib/gmx_lapack/sorglq.c b/src/gromacs/gmxlib/gmx_lapack/sorglq.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sorglq.c
rename to src/gromacs/gmxlib/gmx_lapack/sorglq.c

diff --git a/src/gmxlib/gmx_lapack/sorgqr.c b/src/gromacs/gmxlib/gmx_lapack/sorgqr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sorgqr.c
rename to src/gromacs/gmxlib/gmx_lapack/sorgqr.c

diff --git a/src/gmxlib/gmx_lapack/sorm2l.c b/src/gromacs/gmxlib/gmx_lapack/sorm2l.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sorm2l.c
rename to src/gromacs/gmxlib/gmx_lapack/sorm2l.c

diff --git a/src/gmxlib/gmx_lapack/sorm2r.c b/src/gromacs/gmxlib/gmx_lapack/sorm2r.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sorm2r.c
rename to src/gromacs/gmxlib/gmx_lapack/sorm2r.c

diff --git a/src/gmxlib/gmx_lapack/sormbr.c b/src/gromacs/gmxlib/gmx_lapack/sormbr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sormbr.c
rename to src/gromacs/gmxlib/gmx_lapack/sormbr.c

diff --git a/src/gmxlib/gmx_lapack/sorml2.c b/src/gromacs/gmxlib/gmx_lapack/sorml2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sorml2.c
rename to src/gromacs/gmxlib/gmx_lapack/sorml2.c

diff --git a/src/gmxlib/gmx_lapack/sormlq.c b/src/gromacs/gmxlib/gmx_lapack/sormlq.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sormlq.c
rename to src/gromacs/gmxlib/gmx_lapack/sormlq.c

diff --git a/src/gmxlib/gmx_lapack/sormql.c b/src/gromacs/gmxlib/gmx_lapack/sormql.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sormql.c
rename to src/gromacs/gmxlib/gmx_lapack/sormql.c

diff --git a/src/gmxlib/gmx_lapack/sormqr.c b/src/gromacs/gmxlib/gmx_lapack/sormqr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sormqr.c
rename to src/gromacs/gmxlib/gmx_lapack/sormqr.c

diff --git a/src/gmxlib/gmx_lapack/sormtr.c b/src/gromacs/gmxlib/gmx_lapack/sormtr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sormtr.c
rename to src/gromacs/gmxlib/gmx_lapack/sormtr.c

diff --git a/src/gmxlib/gmx_lapack/sstebz.c b/src/gromacs/gmxlib/gmx_lapack/sstebz.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sstebz.c
rename to src/gromacs/gmxlib/gmx_lapack/sstebz.c

diff --git a/src/gmxlib/gmx_lapack/sstegr.c b/src/gromacs/gmxlib/gmx_lapack/sstegr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sstegr.c
rename to src/gromacs/gmxlib/gmx_lapack/sstegr.c

diff --git a/src/gmxlib/gmx_lapack/sstein.c b/src/gromacs/gmxlib/gmx_lapack/sstein.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sstein.c
rename to src/gromacs/gmxlib/gmx_lapack/sstein.c

diff --git a/src/gmxlib/gmx_lapack/ssteqr.c b/src/gromacs/gmxlib/gmx_lapack/ssteqr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/ssteqr.c
rename to src/gromacs/gmxlib/gmx_lapack/ssteqr.c

diff --git a/src/gmxlib/gmx_lapack/ssterf.c b/src/gromacs/gmxlib/gmx_lapack/ssterf.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/ssterf.c
rename to src/gromacs/gmxlib/gmx_lapack/ssterf.c

diff --git a/src/gmxlib/gmx_lapack/sstevr.c b/src/gromacs/gmxlib/gmx_lapack/sstevr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/sstevr.c
rename to src/gromacs/gmxlib/gmx_lapack/sstevr.c

diff --git a/src/gmxlib/gmx_lapack/ssyevr.c b/src/gromacs/gmxlib/gmx_lapack/ssyevr.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/ssyevr.c
rename to src/gromacs/gmxlib/gmx_lapack/ssyevr.c

diff --git a/src/gmxlib/gmx_lapack/ssytd2.c b/src/gromacs/gmxlib/gmx_lapack/ssytd2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/ssytd2.c
rename to src/gromacs/gmxlib/gmx_lapack/ssytd2.c

diff --git a/src/gmxlib/gmx_lapack/ssytrd.c b/src/gromacs/gmxlib/gmx_lapack/ssytrd.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/ssytrd.c
rename to src/gromacs/gmxlib/gmx_lapack/ssytrd.c

diff --git a/src/gmxlib/gmx_lapack/strti2.c b/src/gromacs/gmxlib/gmx_lapack/strti2.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/strti2.c
rename to src/gromacs/gmxlib/gmx_lapack/strti2.c

diff --git a/src/gmxlib/gmx_lapack/strtri.c b/src/gromacs/gmxlib/gmx_lapack/strtri.c
similarity index 100%
rename from src/gmxlib/gmx_lapack/strtri.c
rename to src/gromacs/gmxlib/gmx_lapack/strtri.c

diff --git a/src/gmxlib/gmx_matrix.c b/src/gromacs/gmxlib/gmx_matrix.c
similarity index 100%
rename from src/gmxlib/gmx_matrix.c
rename to src/gromacs/gmxlib/gmx_matrix.c

diff --git a/src/gmxlib/gmx_random.c b/src/gromacs/gmxlib/gmx_random.c
similarity index 100%
rename from src/gmxlib/gmx_random.c
rename to src/gromacs/gmxlib/gmx_random.c

diff --git a/src/gmxlib/gmx_random_gausstable.h b/src/gromacs/gmxlib/gmx_random_gausstable.h
similarity index 100%
rename from src/gmxlib/gmx_random_gausstable.h
rename to src/gromacs/gmxlib/gmx_random_gausstable.h

diff --git a/src/gmxlib/gmx_sort.c b/src/gromacs/gmxlib/gmx_sort.c
similarity index 100%
rename from src/gmxlib/gmx_sort.c
rename to src/gromacs/gmxlib/gmx_sort.c

diff --git a/src/gmxlib/gmx_system_xdr.c b/src/gromacs/gmxlib/gmx_system_xdr.c
similarity index 100%
rename from src/gmxlib/gmx_system_xdr.c
rename to src/gromacs/gmxlib/gmx_system_xdr.c

diff --git a/src/gmxlib/gmxcpp.c b/src/gromacs/gmxlib/gmxcpp.c
similarity index 100%
rename from src/gmxlib/gmxcpp.c
rename to src/gromacs/gmxlib/gmxcpp.c

diff --git a/src/gmxlib/gmxfio.c b/src/gromacs/gmxlib/gmxfio.c
similarity index 100%
rename from src/gmxlib/gmxfio.c
rename to src/gromacs/gmxlib/gmxfio.c

diff --git a/src/gmxlib/gmxfio_asc.c b/src/gromacs/gmxlib/gmxfio_asc.c
similarity index 100%
rename from src/gmxlib/gmxfio_asc.c
rename to src/gromacs/gmxlib/gmxfio_asc.c

diff --git a/src/gmxlib/gmxfio_bin.c b/src/gromacs/gmxlib/gmxfio_bin.c
similarity index 100%
rename from src/gmxlib/gmxfio_bin.c
rename to src/gromacs/gmxlib/gmxfio_bin.c

diff --git a/src/gmxlib/gmxfio_int.h b/src/gromacs/gmxlib/gmxfio_int.h
similarity index 100%
rename from src/gmxlib/gmxfio_int.h
rename to src/gromacs/gmxlib/gmxfio_int.h

diff --git a/src/gmxlib/gmxfio_rw.c b/src/gromacs/gmxlib/gmxfio_rw.c
similarity index 100%
rename from src/gmxlib/gmxfio_rw.c
rename to src/gromacs/gmxlib/gmxfio_rw.c

diff --git a/src/gmxlib/gmxfio_xdr.c b/src/gromacs/gmxlib/gmxfio_xdr.c
similarity index 100%
rename from src/gmxlib/gmxfio_xdr.c
rename to src/gromacs/gmxlib/gmxfio_xdr.c

diff --git a/src/gmxlib/ifunc.c b/src/gromacs/gmxlib/ifunc.c
similarity index 100%
rename from src/gmxlib/ifunc.c
rename to src/gromacs/gmxlib/ifunc.c

diff --git a/src/gmxlib/index.c b/src/gromacs/gmxlib/index.c
similarity index 100%
rename from src/gmxlib/index.c
rename to src/gromacs/gmxlib/index.c

diff --git a/src/gmxlib/inputrec.c b/src/gromacs/gmxlib/inputrec.c
similarity index 100%
rename from src/gmxlib/inputrec.c
rename to src/gromacs/gmxlib/inputrec.c

diff --git a/src/gmxlib/invblock.c b/src/gromacs/gmxlib/invblock.c
similarity index 100%
rename from src/gmxlib/invblock.c
rename to src/gromacs/gmxlib/invblock.c

diff --git a/src/gmxlib/invsqrt_test.c b/src/gromacs/gmxlib/invsqrt_test.c
similarity index 100%
rename from src/gmxlib/invsqrt_test.c
rename to src/gromacs/gmxlib/invsqrt_test.c

diff --git a/src/gmxlib/libxdrf.c b/src/gromacs/gmxlib/libxdrf.c
similarity index 100%
rename from src/gmxlib/libxdrf.c
rename to src/gromacs/gmxlib/libxdrf.c

diff --git a/src/gmxlib/macros.c b/src/gromacs/gmxlib/macros.c
similarity index 100%
rename from src/gmxlib/macros.c
rename to src/gromacs/gmxlib/macros.c

diff --git a/src/gmxlib/main.c b/src/gromacs/gmxlib/main.c
similarity index 100%
rename from src/gmxlib/main.c
rename to src/gromacs/gmxlib/main.c

diff --git a/src/gmxlib/maths.c b/src/gromacs/gmxlib/maths.c
similarity index 100%
rename from src/gmxlib/maths.c
rename to src/gromacs/gmxlib/maths.c

diff --git a/src/gmxlib/matio.c b/src/gromacs/gmxlib/matio.c
similarity index 100%
rename from src/gmxlib/matio.c
rename to src/gromacs/gmxlib/matio.c

diff --git a/src/gmxlib/md5.c b/src/gromacs/gmxlib/md5.c
similarity index 100%
rename from src/gmxlib/md5.c
rename to src/gromacs/gmxlib/md5.c

diff --git a/src/gmxlib/minvert.h b/src/gromacs/gmxlib/minvert.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel122.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel122.f
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rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel122.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel122.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel123.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel123.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel123.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel123.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel124.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel124.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel124.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel124.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel130.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel130.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel130.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel130.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel131.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel131.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel131.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel131.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel132.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel132.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel132.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel132.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel133.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel133.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel133.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel133.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel134.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel134.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel134.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel134.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel200.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel200.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel200.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel200.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel201.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel201.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel201.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel201.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel202.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel202.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel202.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel202.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel203.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel203.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel203.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel203.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel204.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel204.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel204.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel204.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel210.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel210.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel210.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel210.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel211.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel211.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel211.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel211.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel212.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel212.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel212.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel212.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel213.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel213.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel213.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel213.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel214.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel214.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel214.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel214.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel220.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel220.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel220.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel220.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel221.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel221.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel221.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel221.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel222.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel222.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel222.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel222.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel223.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel223.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel223.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel223.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel224.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel224.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel224.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel224.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel230.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel230.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel230.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel230.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel231.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel231.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel231.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel231.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel232.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel232.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel232.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel232.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel233.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel233.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel233.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel233.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel234.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel234.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel234.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel234.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel300.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel300.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel300.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel300.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel301.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel301.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel301.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel301.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel302.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel302.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel302.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel302.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel303.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel303.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel303.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel303.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel304.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel304.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel304.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel304.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel310.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel310.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel310.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel310.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel311.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel311.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel311.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel311.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel312.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel312.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel312.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel312.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel313.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel313.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel313.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel313.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel314.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel314.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel314.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel320.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel320.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel320.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel320.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel321.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel321.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel321.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel322.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel322.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel322.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel323.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel323.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel323.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel324.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel324.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel324.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel330.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel330.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel330.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel331.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel331.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel331.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel332.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel332.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel332.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel333.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel333.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel333.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel334.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel334.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel334.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel400.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel400.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel400.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel410.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel410.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel410.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel420.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel420.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel420.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel430.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel430.f
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel430.f
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/f77dkernel430.f

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel010_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel010_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel010_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel010_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel010_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel010_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel010_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel010_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel020_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel020_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel020_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel020_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel020_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel020_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel020_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel020_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel030_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel030_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel030_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel030_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel030_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel030_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel030_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel030_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel100_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel100_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel100_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel100_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel100_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel100_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel100_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel100_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel101_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel101_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel101_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel101_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel101_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel101_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel101_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel101_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel102_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel102_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel102_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel102_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel102_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel102_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel102_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel102_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel103_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel103_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel103_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel103_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel103_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel103_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel103_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel103_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel104_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel104_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel104_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel104_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel104_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel104_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel104_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel104_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel110_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel110_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel110_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel110_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel110_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel110_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel110_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel110_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel111_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel111_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel111_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel111_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel111_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel111_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel111_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel111_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel112_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel112_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel112_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel112_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel112_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel112_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel112_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel112_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel113_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel113_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel113_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel113_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel113_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel113_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel113_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel113_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel114_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel114_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel114_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel114_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel114_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel114_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel114_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel114_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel120_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel120_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel120_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel120_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel120_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel120_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel120_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel120_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel121_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel121_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel121_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel121_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel121_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel121_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel121_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel121_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel122_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel122_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel122_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel122_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel122_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel122_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel122_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel122_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel123_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel123_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel123_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel123_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel123_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel123_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel123_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel123_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel124_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel124_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel124_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel124_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel124_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel124_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel124_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel124_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel130_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel130_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel130_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel130_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel130_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel130_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel130_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel130_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel131_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel131_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel131_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel131_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel131_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel131_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel131_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel131_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel132_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel132_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel132_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel132_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel132_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel132_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel132_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel132_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel133_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel133_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel133_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel133_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel133_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel133_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel133_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel133_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel134_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel134_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel134_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel134_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel134_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel134_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel134_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel134_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel200_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel200_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel200_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel200_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel200_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel200_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel200_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel200_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel201_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel201_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel201_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel201_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel201_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel201_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel201_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel201_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel202_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel202_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel202_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel202_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel202_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel202_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel202_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel202_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel203_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel203_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel203_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel203_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel203_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel203_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel203_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel203_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel204_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel204_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel204_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel204_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel204_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel204_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel204_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel204_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel210_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel210_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel210_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel210_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel210_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel210_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel210_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel210_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel211_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel211_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel211_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel211_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel211_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel211_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel211_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel211_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel212_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel212_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel212_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel212_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel212_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel212_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel212_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel212_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel213_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel213_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel213_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel213_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel213_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel213_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel213_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel213_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel214_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel214_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel214_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel214_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel214_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel214_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel214_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel214_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel220_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel220_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel220_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel220_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel220_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel220_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel220_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel220_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel221_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel221_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel221_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel221_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel221_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel221_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel221_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel221_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel222_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel222_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel222_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel222_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel222_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel222_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel222_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel222_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel223_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel223_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel223_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel223_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel223_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel223_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel223_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel223_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel224_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel224_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel224_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel224_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel224_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel224_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel224_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel224_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel230_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel230_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel230_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel230_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel230_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel230_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel230_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel230_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel231_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel231_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel231_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel231_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel231_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel231_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel231_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel231_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel232_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel232_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel232_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel232_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel232_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel232_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel232_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel232_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel233_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel233_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel233_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel233_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel233_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel233_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel233_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel233_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel234_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel234_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel234_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel234_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel234_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel234_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel234_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel234_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel300_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel300_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel300_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel300_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel300_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel300_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel300_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel300_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel301_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel301_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel301_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel301_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel301_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel301_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel301_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel301_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel302_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel302_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel302_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel302_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel302_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel302_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel302_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel302_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel303_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel303_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel303_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel303_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel303_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel303_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel303_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel303_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel304_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel304_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel304_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel304_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel304_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel304_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel304_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel304_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel310_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel310_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel310_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel310_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel310_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel310_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel310_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel310_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel311_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel311_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel311_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel311_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel311_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel311_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel311_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel311_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel312_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel312_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel312_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel312_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel312_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel312_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel312_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel312_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel313_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel313_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel313_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel313_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel313_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel313_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel313_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel313_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel314_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel314_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel314_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel314_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel314_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel314_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel314_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel314_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel320_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel320_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel320_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel320_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel320_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel320_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel320_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel320_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel321_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel321_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel321_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel321_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel321_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel321_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel321_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel321_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel322_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel322_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel322_f77_double.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel322_f77_double.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel322_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel322_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel322_f77_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel322_f77_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel323_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel323_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel323_f77_double.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel323_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel323_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel323_f77_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel324_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel324_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel324_f77_double.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel324_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel324_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel324_f77_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel330_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel330_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel330_f77_double.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel330_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel330_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel330_f77_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel331_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel331_f77_double.c
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel331_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel331_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel331_f77_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel332_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel332_f77_double.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel332_f77_double.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel332_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel332_f77_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel333_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel333_f77_double.c
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel333_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel333_f77_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel334_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel334_f77_double.c
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel334_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel334_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel334_f77_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel400_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel400_f77_double.c
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel400_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel400_f77_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel400_f77_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel410_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel410_f77_double.c
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel410_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel410_f77_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel420_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel420_f77_double.c
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel420_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel420_f77_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel430_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel430_f77_double.c
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel430_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel430_f77_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel_f77_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel_f77_double.c
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel_f77_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel_f77_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel_f77sync.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_double/nb_kernel_f77sync.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/.gitignore b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/.gitignore
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/Makefile.am b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/Makefile.am
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel010.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel010.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel020.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel020.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel100.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel100.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel101.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel101.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel110.f b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/f77skernel110.f
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel333_f77_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel333_f77_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel334_f77_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel334_f77_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel334_f77_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel334_f77_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel400_f77_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel400_f77_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel400_f77_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel400_f77_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel410_f77_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel410_f77_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel420_f77_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel420_f77_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel430_f77_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel430_f77_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel_f77sync.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_f77_single/nb_kernel_f77sync.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/.gitignore b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/.gitignore
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_allvsall_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_allvsall_sse2_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/README b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/README
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel010_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel010_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel100_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel100_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel104_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel104_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel104_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel104_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel110_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel110_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel110_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel110_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel110_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel110_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel111_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel111_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel111_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel111_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel111_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel111_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel112_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel112_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel112_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel112_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel112_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel112_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel113_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel113_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel113_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel113_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel113_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel113_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel114_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel114_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel114_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel114_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel114_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel114_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel130_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel130_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel130_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel130_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel130_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel130_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel131_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel131_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel131_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel131_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel131_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel131_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel132_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel132_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel132_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel132_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel132_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel132_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel133_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel133_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel133_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel133_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel133_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel133_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel134_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel134_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel134_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel134_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel134_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel134_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel200_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel200_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel200_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel200_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel200_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel200_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel201_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel201_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel202_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel202_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel202_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel202_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel204_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel204_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel210_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel210_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel210_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel210_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel210_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel210_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel211_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel211_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel211_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel211_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel211_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel211_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel212_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel212_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel212_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel212_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel212_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel212_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel213_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel213_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel213_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel213_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel213_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel213_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel214_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel214_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel214_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel214_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel214_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel214_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel230_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel230_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel230_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel230_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel230_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel230_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel231_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel231_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel231_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel231_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel231_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel231_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel232_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel232_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel232_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel232_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel232_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel232_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel233_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel233_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel233_ia32_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel233_ia32_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel233_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel233_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel234_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel234_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel234_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel234_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel300_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel300_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel300_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel300_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel301_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel301_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel302_ia32_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel302_ia32_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel304_ia32_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia32_sse2/nb_kernel304_ia32_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.am b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.am
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rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.am
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.am

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/README b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/README
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/README
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/README

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/ia64_cpuid.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/ia64_cpuid.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/ia64_cpuid.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/ia64_cpuid.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/ia64_cpuid.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/ia64_cpuid.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/ia64_cpuid.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/ia64_cpuid.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010nf_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010nf_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010nf_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010nf_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010nf_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel010nf_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030nf_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030nf_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030nf_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030nf_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030nf_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel030nf_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100nf_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100nf_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100nf_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100nf_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100nf_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel100nf_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110nf_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110nf_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110nf_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110nf_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110nf_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel110nf_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130nf_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130nf_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130nf_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130nf_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130nf_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel130nf_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200nf_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200nf_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200nf_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200nf_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200nf_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel200nf_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210_ia64_double.S
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210_ia64_double.S

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210nf_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210nf_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210nf_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210nf_ia64_double.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel210nf_ia64_double.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230_ia64_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230nf_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230nf_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230nf_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel230nf_ia64_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300_ia64_double.S
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300_ia64_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300nf_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300nf_ia64_double.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel300nf_ia64_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel310_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel310_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel310_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel310_ia64_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel310nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel310nf_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel310nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel310nf_ia64_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel330_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel330_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel330_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel330_ia64_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel330nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel330nf_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel330nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel330nf_ia64_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel400_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel400_ia64_double.S
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel400_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel400_ia64_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel400nf_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel400nf_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel400nf_ia64_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel400nf_ia64_double.h
similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel410_ia64_double.S b/src/gromacs/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel410_ia64_double.S
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel124_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel124_power6.c
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rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel124_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel124_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel124_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel124_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel124_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel124_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel130_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel130_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel130_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel130_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel130_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel130_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel130_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel130_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel131_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel131_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel131_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel131_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel131_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel131_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel131_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel131_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel132_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel132_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel132_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel132_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel132_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel132_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel132_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel132_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel133_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel133_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel133_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel133_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel133_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel133_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel133_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel133_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel134_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel134_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel134_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel134_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel134_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel134_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel134_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel134_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel200_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel200_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel200_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel200_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel200_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel200_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel200_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel200_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel201_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel201_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel201_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel201_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel201_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel201_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel201_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel201_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel202_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel202_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel202_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel202_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel202_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel202_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel202_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel202_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel203_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel203_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel203_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel203_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel203_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel203_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel203_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel203_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel204_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel204_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel204_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel204_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel204_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel204_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel204_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel204_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel210_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel210_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel210_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel210_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel210_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel210_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel210_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel210_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel211_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel211_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel211_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel211_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel211_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel211_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel211_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel211_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel212_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel212_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel212_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel212_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel212_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel212_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel212_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel212_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel213_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel213_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel213_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel213_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel213_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel213_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel213_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel213_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel214_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel214_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel214_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel214_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel214_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel214_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel214_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel214_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel220_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel220_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel220_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel220_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel220_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel220_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel220_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel220_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel221_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel221_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel221_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel221_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel221_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel221_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel221_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel221_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel222_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel222_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel222_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel222_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel222_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel222_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel222_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel222_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel223_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel223_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel223_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel223_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel223_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel223_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel223_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel223_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel224_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel224_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel224_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel224_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel224_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel224_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel224_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel224_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel230_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel230_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel230_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel230_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel230_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel230_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel230_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel230_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel231_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel231_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel231_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel231_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel231_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel231_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel231_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel231_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel232_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel232_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel232_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel232_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel232_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel232_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel232_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel232_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel233_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel233_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel233_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel233_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel233_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel233_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel233_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel233_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel234_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel234_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel234_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel234_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel234_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel234_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel234_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel234_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel300_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel300_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel300_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel300_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel300_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel300_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel300_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel300_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel301_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel301_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel301_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel301_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel301_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel301_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel301_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel301_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel302_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel302_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel302_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel302_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel302_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel302_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel302_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel302_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel303_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel303_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel303_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel303_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel303_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel303_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel303_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel303_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel304_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel304_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel304_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel304_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel304_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel304_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel304_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel304_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel310_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel310_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel310_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel310_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel310_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel310_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel310_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel310_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel311_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel311_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel311_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel311_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel311_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel311_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel311_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel311_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel312_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel312_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel312_power6.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel312_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel312_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel312_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel312_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel313_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel313_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel313_power6.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel313_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel313_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel313_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel313_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel314_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel314_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel314_power6.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel314_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel314_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel314_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel314_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel320_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel320_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel320_power6.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel320_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel320_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel320_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel320_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel321_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel321_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel321_power6.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel321_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel321_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel321_power6.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel322_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel322_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel322_power6.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel322_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel322_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel322_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel322_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel323_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel323_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel323_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel323_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel323_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel323_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel323_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel323_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel324_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel324_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel324_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel324_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel324_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel324_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel324_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel324_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel330_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel330_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel330_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel330_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel330_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel330_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel330_power6.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel331_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel331_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel331_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel331_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel331_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel331_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel331_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel331_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel332_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel332_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel332_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel332_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel332_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel332_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel332_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel332_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel333_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel333_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel333_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel333_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel333_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel333_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel333_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel333_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel334_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel334_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel334_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel334_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel334_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel334_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel334_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel334_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel400_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel400_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel400_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel400_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel400_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel400_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel400_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel400_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel410_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel410_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel410_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel410_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel410_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel410_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel410_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel410_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel420_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel420_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel420_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel420_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel420_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel420_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel420_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel420_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel430_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel430_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel430_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel430_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel430_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel430_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel430_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel430_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_power6.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_power6.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_power6.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_power6.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_power6.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_power6.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_power6.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_power6.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_pwr6sync.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_pwr6sync.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_pwr6sync.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_power6/nb_kernel_pwr6sync.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel010.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel010.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel010.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel020.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel020.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel020.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel030.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel030.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel030.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel100.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel100.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel100.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel101.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel101.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel101.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel102.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel102.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel102.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel103.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel103.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel103.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel104.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel104.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel104.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel110.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel110.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel110.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel111.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel111.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel111.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel112.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel112.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel112.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel113.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel113.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel113.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel114.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel114.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel114.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel120.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel120.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel120.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel121.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel121.F
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel121.F
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diff --git a/src/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel122.F b/src/gromacs/gmxlib/nonbonded/nb_kernel_power6/pwr6kernel122.F
similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile.am b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile.am
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel010_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel010_ppc_altivec.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel030_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel030_ppc_altivec.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel030_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel030_ppc_altivec.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel100_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel100_ppc_altivec.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel101_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel101_ppc_altivec.c
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rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel101_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel101_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel101_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel101_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel101_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel101_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel102_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel102_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel102_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel102_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel102_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel102_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel102_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel102_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel103_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel103_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel103_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel103_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel103_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel103_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel103_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel103_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel104_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel104_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel104_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel104_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel104_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel104_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel104_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel104_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel110_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel110_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel110_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel110_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel110_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel110_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel110_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel110_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel111_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel111_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel111_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel111_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel111_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel111_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel111_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel111_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel112_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel112_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel112_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel112_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel112_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel112_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel112_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel112_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel113_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel113_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel113_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel113_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel113_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel113_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel113_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel113_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel114_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel114_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel114_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel114_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel114_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel114_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel114_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel114_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel130_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel130_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel130_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel130_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel130_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel130_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel130_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel130_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel131_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel131_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel131_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel131_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel131_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel131_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel131_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel131_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel132_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel132_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel132_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel132_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel132_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel132_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel132_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel132_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel133_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel133_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel133_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel133_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel133_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel133_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel133_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel133_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel134_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel134_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel134_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel134_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel134_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel134_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel134_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel134_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel200_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel200_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel200_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel200_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel200_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel200_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel200_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel200_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel201_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel201_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel201_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel201_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel201_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel201_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel201_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel201_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel202_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel202_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel202_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel202_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel202_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel202_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel202_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel202_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel203_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel203_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel203_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel203_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel203_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel203_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel203_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel203_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel204_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel204_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel204_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel204_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel204_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel204_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel204_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel204_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel210_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel210_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel210_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel210_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel210_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel210_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel210_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel210_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel211_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel211_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel211_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel211_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel211_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel211_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel211_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel211_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel212_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel212_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel212_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel212_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel212_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel212_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel212_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel212_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel213_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel213_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel213_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel213_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel213_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel213_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel213_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel213_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel214_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel214_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel214_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel214_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel214_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel214_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel214_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel214_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel230_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel230_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel230_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel230_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel230_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel230_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel230_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel230_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel231_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel231_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel231_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel231_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel231_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel231_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel231_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel231_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel232_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel232_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel232_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel232_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel232_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel232_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel232_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel232_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel233_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel233_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel233_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel233_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel233_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel233_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel233_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel233_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel234_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel234_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel234_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel234_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel234_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel234_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel234_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel234_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel300_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel300_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel300_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel300_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel300_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel300_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel300_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel300_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel301_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel301_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel301_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel301_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel301_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel301_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel301_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel301_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel302_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel302_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel302_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel302_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel302_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel302_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel302_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel302_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel303_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel303_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel303_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel303_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel303_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel303_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel303_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel303_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel304_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel304_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel304_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel304_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel304_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel304_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel304_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel304_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel310_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel310_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel310_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel310_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel310_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel310_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel310_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel310_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel311_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel311_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel311_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel311_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel311_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel311_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel311_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel311_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel312_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel312_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel312_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel312_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel312_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel312_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel312_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel312_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel313_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel313_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel313_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel313_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel313_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel313_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel313_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel313_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel314_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel314_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel314_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel314_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel314_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel314_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel314_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel314_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel330_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel330_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel330_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel330_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel330_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel330_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel330_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel330_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel331_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel331_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel331_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel331_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel331_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel331_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel331_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel331_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel332_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel332_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel332_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel332_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel332_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel332_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel332_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel332_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel333_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel333_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel333_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel333_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel333_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel333_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel333_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel333_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel334_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel334_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel334_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel334_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel334_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel334_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel334_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel334_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel400_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel400_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel400_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel400_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel400_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel400_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel400_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel400_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel410_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel410_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel410_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel410_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel410_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel410_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel410_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel410_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel430_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel430_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel430_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel430_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel430_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel430_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel430_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel430_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec_test.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec_test.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec_test.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec_test.h
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rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/nb_kernel_ppc_altivec_test.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_ppc_altivec/ppc_altivec_util.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_ppc_altivec/ppc_altivec_util.h
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rename from src/gmxlib/nonbonded/nb_kernel_ppc_altivec/ppc_altivec_util.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_double/Makefile.am b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/Makefile.am
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel400_sse2_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel400_sse2_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel410_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel410_sse2_double.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel410_sse2_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel410_sse2_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel430_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel430_sse2_double.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel430_sse2_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel430_sse2_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_sse2_double.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_sse2_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_sse2_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/Makefile.am b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/Makefile.am
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel110_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel110_sse2_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel332_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel332_sse2_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel332_sse2_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel332_sse2_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel400_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel400_sse2_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel400_sse2_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel400_sse2_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel410_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel410_sse2_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel410_sse2_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel410_sse2_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel430_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel430_sse2_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel430_sse2_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel430_sse2_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_allvsall_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_allvsall_sse2_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_allvsall_sse2_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_allvsall_sse2_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_allvsallgb_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_allvsallgb_sse2_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_allvsallgb_sse2_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_allvsallgb_sse2_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_sse2_single.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_sse2_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_sse2_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_sse2_single/sse_common_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/sse_common_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/.gitignore b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/.gitignore
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/README b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/README
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_allvsall_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_allvsall_sse2_single.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_allvsall_sse2_single.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_allvsall_sse2_single.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_allvsall_sse2_single.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_allvsall_sse2_single.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/README b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/README
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2_intel_syntax.s
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2_intel_syntax.s
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2_intel_syntax.s

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.c
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.c
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.c
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.c

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.h
similarity index 100%
rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.c
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.h
rename to src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.h

diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsall_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsall_sse2_double.c
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsall_sse2_double.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsall_sse2_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsall_sse2_double.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsall_sse2_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsallgb_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsallgb_sse2_double.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsallgb_sse2_double.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsallgb_sse2_double.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_allvsallgb_sse2_double.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test_asm.h b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test_asm.h
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test_asm.h
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test_asm.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test_asm.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test_asm.s
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diff --git a/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test_intel_syntax.s b/src/gromacs/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test_intel_syntax.s
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rename from src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test_intel_syntax.s
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diff --git a/src/gmxlib/nonbonded/nb_kerneltype.h b/src/gromacs/gmxlib/nonbonded/nb_kerneltype.h
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rename from src/gmxlib/nonbonded/nb_kerneltype.h
rename to src/gromacs/gmxlib/nonbonded/nb_kerneltype.h

diff --git a/src/gmxlib/nonbonded/nonbonded.c b/src/gromacs/gmxlib/nonbonded/nonbonded.c
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diff --git a/src/gmxlib/nrama.c b/src/gromacs/gmxlib/nrama.c
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diff --git a/src/gmxlib/nrjac.c b/src/gromacs/gmxlib/nrjac.c
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diff --git a/src/gmxlib/nrnb.c b/src/gromacs/gmxlib/nrnb.c
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diff --git a/src/gmxlib/oenv.c b/src/gromacs/gmxlib/oenv.c
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diff --git a/src/gmxlib/orires.c b/src/gromacs/gmxlib/orires.c
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diff --git a/src/gmxlib/pargs.c b/src/gromacs/gmxlib/pargs.c
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rename from src/gmxlib/pargs.c
rename to src/gromacs/gmxlib/pargs.c

diff --git a/src/gmxlib/pbc.c b/src/gromacs/gmxlib/pbc.c
similarity index 100%
rename from src/gmxlib/pbc.c
rename to src/gromacs/gmxlib/pbc.c

diff --git a/src/gmxlib/pdbio.c b/src/gromacs/gmxlib/pdbio.c
similarity index 100%
rename from src/gmxlib/pdbio.c
rename to src/gromacs/gmxlib/pdbio.c

diff --git a/src/gmxlib/physics.c b/src/gromacs/gmxlib/physics.c
similarity index 100%
rename from src/gmxlib/physics.c
rename to src/gromacs/gmxlib/physics.c

diff --git a/src/gmxlib/physics_test.c b/src/gromacs/gmxlib/physics_test.c
similarity index 100%
rename from src/gmxlib/physics_test.c
rename to src/gromacs/gmxlib/physics_test.c

diff --git a/src/gmxlib/princ.c b/src/gromacs/gmxlib/princ.c
similarity index 100%
rename from src/gmxlib/princ.c
rename to src/gromacs/gmxlib/princ.c

diff --git a/src/gmxlib/rando.c b/src/gromacs/gmxlib/rando.c
similarity index 100%
rename from src/gmxlib/rando.c
rename to src/gromacs/gmxlib/rando.c

diff --git a/src/gmxlib/random.c b/src/gromacs/gmxlib/random.c
similarity index 100%
rename from src/gmxlib/random.c
rename to src/gromacs/gmxlib/random.c

diff --git a/src/gmxlib/rbin.c b/src/gromacs/gmxlib/rbin.c
similarity index 100%
rename from src/gmxlib/rbin.c
rename to src/gromacs/gmxlib/rbin.c

diff --git a/src/gmxlib/readinp.c b/src/gromacs/gmxlib/readinp.c
similarity index 100%
rename from src/gmxlib/readinp.c
rename to src/gromacs/gmxlib/readinp.c

diff --git a/src/gmxlib/replace.c b/src/gromacs/gmxlib/replace.c
similarity index 100%
rename from src/gmxlib/replace.c
rename to src/gromacs/gmxlib/replace.c

diff --git a/src/gmxlib/replace.h b/src/gromacs/gmxlib/replace.h
similarity index 100%
rename from src/gmxlib/replace.h
rename to src/gromacs/gmxlib/replace.h

diff --git a/src/gmxlib/rmpbc.c b/src/gromacs/gmxlib/rmpbc.c
similarity index 100%
rename from src/gmxlib/rmpbc.c
rename to src/gromacs/gmxlib/rmpbc.c

diff --git a/src/gmxlib/selection/compiler.c b/src/gromacs/gmxlib/selection/compiler.c
similarity index 100%
rename from src/gmxlib/selection/compiler.c
rename to src/gromacs/gmxlib/selection/compiler.c

diff --git a/src/gmxlib/selection/evaluate.c b/src/gromacs/gmxlib/selection/evaluate.c
similarity index 100%
rename from src/gmxlib/selection/evaluate.c
rename to src/gromacs/gmxlib/selection/evaluate.c

diff --git a/src/gmxlib/selection/evaluate.h b/src/gromacs/gmxlib/selection/evaluate.h
similarity index 100%
rename from src/gmxlib/selection/evaluate.h
rename to src/gromacs/gmxlib/selection/evaluate.h

diff --git a/src/gmxlib/selection/keywords.h b/src/gromacs/gmxlib/selection/keywords.h
similarity index 100%
rename from src/gmxlib/selection/keywords.h
rename to src/gromacs/gmxlib/selection/keywords.h

diff --git a/src/gmxlib/selection/mempool.c b/src/gromacs/gmxlib/selection/mempool.c
similarity index 100%
rename from src/gmxlib/selection/mempool.c
rename to src/gromacs/gmxlib/selection/mempool.c

diff --git a/src/gmxlib/selection/mempool.h b/src/gromacs/gmxlib/selection/mempool.h
similarity index 100%
rename from src/gmxlib/selection/mempool.h
rename to src/gromacs/gmxlib/selection/mempool.h

diff --git a/src/gmxlib/selection/params.c b/src/gromacs/gmxlib/selection/params.c
similarity index 100%
rename from src/gmxlib/selection/params.c
rename to src/gromacs/gmxlib/selection/params.c

diff --git a/src/gmxlib/selection/parser.c b/src/gromacs/gmxlib/selection/parser.c
similarity index 100%
rename from src/gmxlib/selection/parser.c
rename to src/gromacs/gmxlib/selection/parser.c

diff --git a/src/gmxlib/selection/parser.h b/src/gromacs/gmxlib/selection/parser.h
similarity index 100%
rename from src/gmxlib/selection/parser.h
rename to src/gromacs/gmxlib/selection/parser.h

diff --git a/src/gmxlib/selection/parser.y b/src/gromacs/gmxlib/selection/parser.y
similarity index 100%
rename from src/gmxlib/selection/parser.y
rename to src/gromacs/gmxlib/selection/parser.y

diff --git a/src/gmxlib/selection/parsetree.c b/src/gromacs/gmxlib/selection/parsetree.c
similarity index 100%
rename from src/gmxlib/selection/parsetree.c
rename to src/gromacs/gmxlib/selection/parsetree.c

diff --git a/src/gmxlib/selection/parsetree.h b/src/gromacs/gmxlib/selection/parsetree.h
similarity index 100%
rename from src/gmxlib/selection/parsetree.h
rename to src/gromacs/gmxlib/selection/parsetree.h

diff --git a/src/gmxlib/selection/regenerate_parser.sh b/src/gromacs/gmxlib/selection/regenerate_parser.sh
similarity index 95%
rename from src/gmxlib/selection/regenerate_parser.sh
rename to src/gromacs/gmxlib/selection/regenerate_parser.sh
index 5b597dc34bdb5b8f4c6f21bbf715da2c15882830..078bb48be281c1f529cc4210b735eac28a2562a0 100755 (executable)
--- a/src/gmxlib/selection/regenerate_parser.sh
+++ b/src/gromacs/gmxlib/selection/regenerate_parser.sh
@@ -13,7 +13,7 @@ fi
 
 # For convenience, change to the directory where the files are located
 # if the script is run from the root of the source tree.
-dirname=src/gmxlib/selection
+dirname=src/gromacs/gmxlib/selection
 if [[ -f $dirname/parser.y && -f $dirname/scanner.l ]] ; then
     cd $dirname
 fi

diff --git a/src/gmxlib/selection/scanner.c b/src/gromacs/gmxlib/selection/scanner.c
similarity index 100%
rename from src/gmxlib/selection/scanner.c
rename to src/gromacs/gmxlib/selection/scanner.c

diff --git a/src/gmxlib/selection/scanner.h b/src/gromacs/gmxlib/selection/scanner.h
similarity index 100%
rename from src/gmxlib/selection/scanner.h
rename to src/gromacs/gmxlib/selection/scanner.h

diff --git a/src/gmxlib/selection/scanner.l b/src/gromacs/gmxlib/selection/scanner.l
similarity index 100%
rename from src/gmxlib/selection/scanner.l
rename to src/gromacs/gmxlib/selection/scanner.l

diff --git a/src/gmxlib/selection/scanner_flex.h b/src/gromacs/gmxlib/selection/scanner_flex.h
similarity index 100%
rename from src/gmxlib/selection/scanner_flex.h
rename to src/gromacs/gmxlib/selection/scanner_flex.h

diff --git a/src/gmxlib/selection/scanner_internal.c b/src/gromacs/gmxlib/selection/scanner_internal.c
similarity index 100%
rename from src/gmxlib/selection/scanner_internal.c
rename to src/gromacs/gmxlib/selection/scanner_internal.c

diff --git a/src/gmxlib/selection/scanner_internal.h b/src/gromacs/gmxlib/selection/scanner_internal.h
similarity index 100%
rename from src/gmxlib/selection/scanner_internal.h
rename to src/gromacs/gmxlib/selection/scanner_internal.h

diff --git a/src/gmxlib/selection/selcollection.h b/src/gromacs/gmxlib/selection/selcollection.h
similarity index 100%
rename from src/gmxlib/selection/selcollection.h
rename to src/gromacs/gmxlib/selection/selcollection.h

diff --git a/src/gmxlib/selection/selection.c b/src/gromacs/gmxlib/selection/selection.c
similarity index 100%
rename from src/gmxlib/selection/selection.c
rename to src/gromacs/gmxlib/selection/selection.c

diff --git a/src/gmxlib/selection/selelem.c b/src/gromacs/gmxlib/selection/selelem.c
similarity index 100%
rename from src/gmxlib/selection/selelem.c
rename to src/gromacs/gmxlib/selection/selelem.c

diff --git a/src/gmxlib/selection/selelem.h b/src/gromacs/gmxlib/selection/selelem.h
similarity index 100%
rename from src/gmxlib/selection/selelem.h
rename to src/gromacs/gmxlib/selection/selelem.h

diff --git a/src/gmxlib/selection/selhelp.c b/src/gromacs/gmxlib/selection/selhelp.c
similarity index 100%
rename from src/gmxlib/selection/selhelp.c
rename to src/gromacs/gmxlib/selection/selhelp.c

diff --git a/src/gmxlib/selection/selhelp.h b/src/gromacs/gmxlib/selection/selhelp.h
similarity index 100%
rename from src/gmxlib/selection/selhelp.h
rename to src/gromacs/gmxlib/selection/selhelp.h

diff --git a/src/gmxlib/selection/selmethod.c b/src/gromacs/gmxlib/selection/selmethod.c
similarity index 100%
rename from src/gmxlib/selection/selmethod.c
rename to src/gromacs/gmxlib/selection/selmethod.c

diff --git a/src/gmxlib/selection/selvalue.c b/src/gromacs/gmxlib/selection/selvalue.c
similarity index 100%
rename from src/gmxlib/selection/selvalue.c
rename to src/gromacs/gmxlib/selection/selvalue.c

diff --git a/src/gmxlib/selection/sm_compare.c b/src/gromacs/gmxlib/selection/sm_compare.c
similarity index 100%
rename from src/gmxlib/selection/sm_compare.c
rename to src/gromacs/gmxlib/selection/sm_compare.c

diff --git a/src/gmxlib/selection/sm_distance.c b/src/gromacs/gmxlib/selection/sm_distance.c
similarity index 100%
rename from src/gmxlib/selection/sm_distance.c
rename to src/gromacs/gmxlib/selection/sm_distance.c

diff --git a/src/gmxlib/selection/sm_insolidangle.c b/src/gromacs/gmxlib/selection/sm_insolidangle.c
similarity index 100%
rename from src/gmxlib/selection/sm_insolidangle.c
rename to src/gromacs/gmxlib/selection/sm_insolidangle.c

diff --git a/src/gmxlib/selection/sm_keywords.c b/src/gromacs/gmxlib/selection/sm_keywords.c
similarity index 100%
rename from src/gmxlib/selection/sm_keywords.c
rename to src/gromacs/gmxlib/selection/sm_keywords.c

diff --git a/src/gmxlib/selection/sm_merge.c b/src/gromacs/gmxlib/selection/sm_merge.c
similarity index 100%
rename from src/gmxlib/selection/sm_merge.c
rename to src/gromacs/gmxlib/selection/sm_merge.c

diff --git a/src/gmxlib/selection/sm_permute.c b/src/gromacs/gmxlib/selection/sm_permute.c
similarity index 100%
rename from src/gmxlib/selection/sm_permute.c
rename to src/gromacs/gmxlib/selection/sm_permute.c

diff --git a/src/gmxlib/selection/sm_position.c b/src/gromacs/gmxlib/selection/sm_position.c
similarity index 100%
rename from src/gmxlib/selection/sm_position.c
rename to src/gromacs/gmxlib/selection/sm_position.c

diff --git a/src/gmxlib/selection/sm_same.c b/src/gromacs/gmxlib/selection/sm_same.c
similarity index 100%
rename from src/gmxlib/selection/sm_same.c
rename to src/gromacs/gmxlib/selection/sm_same.c

diff --git a/src/gmxlib/selection/sm_simple.c b/src/gromacs/gmxlib/selection/sm_simple.c
similarity index 100%
rename from src/gmxlib/selection/sm_simple.c
rename to src/gromacs/gmxlib/selection/sm_simple.c

diff --git a/src/gmxlib/selection/symrec.c b/src/gromacs/gmxlib/selection/symrec.c
similarity index 100%
rename from src/gmxlib/selection/symrec.c
rename to src/gromacs/gmxlib/selection/symrec.c

diff --git a/src/gmxlib/selection/symrec.h b/src/gromacs/gmxlib/selection/symrec.h
similarity index 100%
rename from src/gmxlib/selection/symrec.h
rename to src/gromacs/gmxlib/selection/symrec.h

diff --git a/src/gmxlib/selection/test_selection.c b/src/gromacs/gmxlib/selection/test_selection.c
similarity index 100%
rename from src/gmxlib/selection/test_selection.c
rename to src/gromacs/gmxlib/selection/test_selection.c

diff --git a/src/gmxlib/sfactor.c b/src/gromacs/gmxlib/sfactor.c
similarity index 100%
rename from src/gmxlib/sfactor.c
rename to src/gromacs/gmxlib/sfactor.c

diff --git a/src/gmxlib/shift_util.c b/src/gromacs/gmxlib/shift_util.c
similarity index 100%
rename from src/gmxlib/shift_util.c
rename to src/gromacs/gmxlib/shift_util.c

diff --git a/src/gmxlib/sighandler.c b/src/gromacs/gmxlib/sighandler.c
similarity index 100%
rename from src/gmxlib/sighandler.c
rename to src/gromacs/gmxlib/sighandler.c

diff --git a/src/gmxlib/smalloc.c b/src/gromacs/gmxlib/smalloc.c
similarity index 100%
rename from src/gmxlib/smalloc.c
rename to src/gromacs/gmxlib/smalloc.c

diff --git a/src/gmxlib/sortwater.c b/src/gromacs/gmxlib/sortwater.c
similarity index 100%
rename from src/gmxlib/sortwater.c
rename to src/gromacs/gmxlib/sortwater.c

diff --git a/src/gmxlib/sparsematrix.c b/src/gromacs/gmxlib/sparsematrix.c
similarity index 100%
rename from src/gmxlib/sparsematrix.c
rename to src/gromacs/gmxlib/sparsematrix.c

diff --git a/src/gmxlib/splitter.c b/src/gromacs/gmxlib/splitter.c
similarity index 100%
rename from src/gmxlib/splitter.c
rename to src/gromacs/gmxlib/splitter.c

diff --git a/src/gmxlib/statistics/gmx_statistics.c b/src/gromacs/gmxlib/statistics/gmx_statistics.c
similarity index 100%
rename from src/gmxlib/statistics/gmx_statistics.c
rename to src/gromacs/gmxlib/statistics/gmx_statistics.c

diff --git a/src/gmxlib/statistics/gmx_statistics_test.c b/src/gromacs/gmxlib/statistics/gmx_statistics_test.c
similarity index 100%
rename from src/gmxlib/statistics/gmx_statistics_test.c
rename to src/gromacs/gmxlib/statistics/gmx_statistics_test.c

diff --git a/src/gmxlib/statistics/histogram.c b/src/gromacs/gmxlib/statistics/histogram.c
similarity index 100%
rename from src/gmxlib/statistics/histogram.c
rename to src/gromacs/gmxlib/statistics/histogram.c

diff --git a/src/gmxlib/statutil.c b/src/gromacs/gmxlib/statutil.c
similarity index 100%
rename from src/gmxlib/statutil.c
rename to src/gromacs/gmxlib/statutil.c

diff --git a/src/gmxlib/strdb.c b/src/gromacs/gmxlib/strdb.c
similarity index 100%
rename from src/gmxlib/strdb.c
rename to src/gromacs/gmxlib/strdb.c

diff --git a/src/gmxlib/string2.c b/src/gromacs/gmxlib/string2.c
similarity index 100%
rename from src/gmxlib/string2.c
rename to src/gromacs/gmxlib/string2.c

diff --git a/src/gmxlib/symtab.c b/src/gromacs/gmxlib/symtab.c
similarity index 100%
rename from src/gmxlib/symtab.c
rename to src/gromacs/gmxlib/symtab.c

diff --git a/src/gmxlib/tcontrol.c b/src/gromacs/gmxlib/tcontrol.c
similarity index 100%
rename from src/gmxlib/tcontrol.c
rename to src/gromacs/gmxlib/tcontrol.c

diff --git a/src/gmxlib/thread_mpi/CMakeLists.txt b/src/gromacs/gmxlib/thread_mpi/CMakeLists.txt
similarity index 100%
rename from src/gmxlib/thread_mpi/CMakeLists.txt
rename to src/gromacs/gmxlib/thread_mpi/CMakeLists.txt

diff --git a/src/gmxlib/thread_mpi/alltoall.c b/src/gromacs/gmxlib/thread_mpi/alltoall.c
similarity index 100%
rename from src/gmxlib/thread_mpi/alltoall.c
rename to src/gromacs/gmxlib/thread_mpi/alltoall.c

diff --git a/src/gmxlib/thread_mpi/barrier.c b/src/gromacs/gmxlib/thread_mpi/barrier.c
similarity index 100%
rename from src/gmxlib/thread_mpi/barrier.c
rename to src/gromacs/gmxlib/thread_mpi/barrier.c

diff --git a/src/gmxlib/thread_mpi/bcast.c b/src/gromacs/gmxlib/thread_mpi/bcast.c
similarity index 100%
rename from src/gmxlib/thread_mpi/bcast.c
rename to src/gromacs/gmxlib/thread_mpi/bcast.c

diff --git a/src/gmxlib/thread_mpi/collective.c b/src/gromacs/gmxlib/thread_mpi/collective.c
similarity index 100%
rename from src/gmxlib/thread_mpi/collective.c
rename to src/gromacs/gmxlib/thread_mpi/collective.c

diff --git a/src/gmxlib/thread_mpi/collective.h b/src/gromacs/gmxlib/thread_mpi/collective.h
similarity index 100%
rename from src/gmxlib/thread_mpi/collective.h
rename to src/gromacs/gmxlib/thread_mpi/collective.h

diff --git a/src/gmxlib/thread_mpi/comm.c b/src/gromacs/gmxlib/thread_mpi/comm.c
similarity index 100%
rename from src/gmxlib/thread_mpi/comm.c
rename to src/gromacs/gmxlib/thread_mpi/comm.c

diff --git a/src/gmxlib/thread_mpi/errhandler.c b/src/gromacs/gmxlib/thread_mpi/errhandler.c
similarity index 100%
rename from src/gmxlib/thread_mpi/errhandler.c
rename to src/gromacs/gmxlib/thread_mpi/errhandler.c

diff --git a/src/gmxlib/thread_mpi/event.c b/src/gromacs/gmxlib/thread_mpi/event.c
similarity index 100%
rename from src/gmxlib/thread_mpi/event.c
rename to src/gromacs/gmxlib/thread_mpi/event.c

diff --git a/src/gmxlib/thread_mpi/gather.c b/src/gromacs/gmxlib/thread_mpi/gather.c
similarity index 100%
rename from src/gmxlib/thread_mpi/gather.c
rename to src/gromacs/gmxlib/thread_mpi/gather.c

diff --git a/src/gmxlib/thread_mpi/group.c b/src/gromacs/gmxlib/thread_mpi/group.c
similarity index 100%
rename from src/gmxlib/thread_mpi/group.c
rename to src/gromacs/gmxlib/thread_mpi/group.c

diff --git a/src/gmxlib/thread_mpi/hwinfo.c b/src/gromacs/gmxlib/thread_mpi/hwinfo.c
similarity index 100%
rename from src/gmxlib/thread_mpi/hwinfo.c
rename to src/gromacs/gmxlib/thread_mpi/hwinfo.c

diff --git a/src/gmxlib/thread_mpi/impl.h b/src/gromacs/gmxlib/thread_mpi/impl.h
similarity index 100%
rename from src/gmxlib/thread_mpi/impl.h
rename to src/gromacs/gmxlib/thread_mpi/impl.h

diff --git a/src/gmxlib/thread_mpi/list.c b/src/gromacs/gmxlib/thread_mpi/list.c
similarity index 100%
rename from src/gmxlib/thread_mpi/list.c
rename to src/gromacs/gmxlib/thread_mpi/list.c

diff --git a/src/gmxlib/thread_mpi/lock.c b/src/gromacs/gmxlib/thread_mpi/lock.c
similarity index 100%
rename from src/gmxlib/thread_mpi/lock.c
rename to src/gromacs/gmxlib/thread_mpi/lock.c

diff --git a/src/gmxlib/thread_mpi/once.c b/src/gromacs/gmxlib/thread_mpi/once.c
similarity index 100%
rename from src/gmxlib/thread_mpi/once.c
rename to src/gromacs/gmxlib/thread_mpi/once.c

diff --git a/src/gmxlib/thread_mpi/p2p.h b/src/gromacs/gmxlib/thread_mpi/p2p.h
similarity index 100%
rename from src/gmxlib/thread_mpi/p2p.h
rename to src/gromacs/gmxlib/thread_mpi/p2p.h

diff --git a/src/gmxlib/thread_mpi/p2p_protocol.c b/src/gromacs/gmxlib/thread_mpi/p2p_protocol.c
similarity index 100%
rename from src/gmxlib/thread_mpi/p2p_protocol.c
rename to src/gromacs/gmxlib/thread_mpi/p2p_protocol.c

diff --git a/src/gmxlib/thread_mpi/p2p_send_recv.c b/src/gromacs/gmxlib/thread_mpi/p2p_send_recv.c
similarity index 100%
rename from src/gmxlib/thread_mpi/p2p_send_recv.c
rename to src/gromacs/gmxlib/thread_mpi/p2p_send_recv.c

diff --git a/src/gmxlib/thread_mpi/p2p_wait.c b/src/gromacs/gmxlib/thread_mpi/p2p_wait.c
similarity index 100%
rename from src/gmxlib/thread_mpi/p2p_wait.c
rename to src/gromacs/gmxlib/thread_mpi/p2p_wait.c

diff --git a/src/gmxlib/thread_mpi/profile.c b/src/gromacs/gmxlib/thread_mpi/profile.c
similarity index 100%
rename from src/gmxlib/thread_mpi/profile.c
rename to src/gromacs/gmxlib/thread_mpi/profile.c

diff --git a/src/gmxlib/thread_mpi/profile.h b/src/gromacs/gmxlib/thread_mpi/profile.h
similarity index 100%
rename from src/gmxlib/thread_mpi/profile.h
rename to src/gromacs/gmxlib/thread_mpi/profile.h

diff --git a/src/gmxlib/thread_mpi/pthreads.c b/src/gromacs/gmxlib/thread_mpi/pthreads.c
similarity index 100%
rename from src/gmxlib/thread_mpi/pthreads.c
rename to src/gromacs/gmxlib/thread_mpi/pthreads.c

diff --git a/src/gmxlib/thread_mpi/pthreads.h b/src/gromacs/gmxlib/thread_mpi/pthreads.h
similarity index 100%
rename from src/gmxlib/thread_mpi/pthreads.h
rename to src/gromacs/gmxlib/thread_mpi/pthreads.h

diff --git a/src/gmxlib/thread_mpi/reduce.c b/src/gromacs/gmxlib/thread_mpi/reduce.c
similarity index 100%
rename from src/gmxlib/thread_mpi/reduce.c
rename to src/gromacs/gmxlib/thread_mpi/reduce.c

diff --git a/src/gmxlib/thread_mpi/reduce_fast.c b/src/gromacs/gmxlib/thread_mpi/reduce_fast.c
similarity index 100%
rename from src/gmxlib/thread_mpi/reduce_fast.c
rename to src/gromacs/gmxlib/thread_mpi/reduce_fast.c

diff --git a/src/gmxlib/thread_mpi/scatter.c b/src/gromacs/gmxlib/thread_mpi/scatter.c
similarity index 100%
rename from src/gmxlib/thread_mpi/scatter.c
rename to src/gromacs/gmxlib/thread_mpi/scatter.c

diff --git a/src/gmxlib/thread_mpi/settings.h b/src/gromacs/gmxlib/thread_mpi/settings.h
similarity index 100%
rename from src/gmxlib/thread_mpi/settings.h
rename to src/gromacs/gmxlib/thread_mpi/settings.h

diff --git a/src/gmxlib/thread_mpi/tmpi_init.c b/src/gromacs/gmxlib/thread_mpi/tmpi_init.c
similarity index 100%
rename from src/gmxlib/thread_mpi/tmpi_init.c
rename to src/gromacs/gmxlib/thread_mpi/tmpi_init.c

diff --git a/src/gmxlib/thread_mpi/tmpi_ops.h b/src/gromacs/gmxlib/thread_mpi/tmpi_ops.h
similarity index 100%
rename from src/gmxlib/thread_mpi/tmpi_ops.h
rename to src/gromacs/gmxlib/thread_mpi/tmpi_ops.h

diff --git a/src/gmxlib/thread_mpi/topology.c b/src/gromacs/gmxlib/thread_mpi/topology.c
similarity index 100%
rename from src/gmxlib/thread_mpi/topology.c
rename to src/gromacs/gmxlib/thread_mpi/topology.c

diff --git a/src/gmxlib/thread_mpi/type.c b/src/gromacs/gmxlib/thread_mpi/type.c
similarity index 100%
rename from src/gmxlib/thread_mpi/type.c
rename to src/gromacs/gmxlib/thread_mpi/type.c

diff --git a/src/gmxlib/thread_mpi/winthreads.c b/src/gromacs/gmxlib/thread_mpi/winthreads.c
similarity index 100%
rename from src/gmxlib/thread_mpi/winthreads.c
rename to src/gromacs/gmxlib/thread_mpi/winthreads.c

diff --git a/src/gmxlib/thread_mpi/winthreads.h b/src/gromacs/gmxlib/thread_mpi/winthreads.h
similarity index 100%
rename from src/gmxlib/thread_mpi/winthreads.h
rename to src/gromacs/gmxlib/thread_mpi/winthreads.h

diff --git a/src/gmxlib/topsort.c b/src/gromacs/gmxlib/topsort.c
similarity index 100%
rename from src/gmxlib/topsort.c
rename to src/gromacs/gmxlib/topsort.c

diff --git a/src/gmxlib/tpxio.c b/src/gromacs/gmxlib/tpxio.c
similarity index 100%
rename from src/gmxlib/tpxio.c
rename to src/gromacs/gmxlib/tpxio.c

diff --git a/src/gmxlib/trajana/centerofmass.c b/src/gromacs/gmxlib/trajana/centerofmass.c
similarity index 100%
rename from src/gmxlib/trajana/centerofmass.c
rename to src/gromacs/gmxlib/trajana/centerofmass.c

diff --git a/src/gmxlib/trajana/displacement.c b/src/gromacs/gmxlib/trajana/displacement.c
similarity index 100%
rename from src/gmxlib/trajana/displacement.c
rename to src/gromacs/gmxlib/trajana/displacement.c

diff --git a/src/gmxlib/trajana/indexutil.c b/src/gromacs/gmxlib/trajana/indexutil.c
similarity index 100%
rename from src/gmxlib/trajana/indexutil.c
rename to src/gromacs/gmxlib/trajana/indexutil.c

diff --git a/src/gmxlib/trajana/nbsearch.c b/src/gromacs/gmxlib/trajana/nbsearch.c
similarity index 100%
rename from src/gmxlib/trajana/nbsearch.c
rename to src/gromacs/gmxlib/trajana/nbsearch.c

diff --git a/src/gmxlib/trajana/poscalc.c b/src/gromacs/gmxlib/trajana/poscalc.c
similarity index 100%
rename from src/gmxlib/trajana/poscalc.c
rename to src/gromacs/gmxlib/trajana/poscalc.c

diff --git a/src/gmxlib/trajana/position.c b/src/gromacs/gmxlib/trajana/position.c
similarity index 100%
rename from src/gmxlib/trajana/position.c
rename to src/gromacs/gmxlib/trajana/position.c

diff --git a/src/gmxlib/trajana/trajana.c b/src/gromacs/gmxlib/trajana/trajana.c
similarity index 100%
rename from src/gmxlib/trajana/trajana.c
rename to src/gromacs/gmxlib/trajana/trajana.c

diff --git a/src/gmxlib/trnio.c b/src/gromacs/gmxlib/trnio.c
similarity index 100%
rename from src/gmxlib/trnio.c
rename to src/gromacs/gmxlib/trnio.c

diff --git a/src/gmxlib/trxio.c b/src/gromacs/gmxlib/trxio.c
similarity index 100%
rename from src/gmxlib/trxio.c
rename to src/gromacs/gmxlib/trxio.c

diff --git a/src/gmxlib/txtdump.c b/src/gromacs/gmxlib/txtdump.c
similarity index 100%
rename from src/gmxlib/txtdump.c
rename to src/gromacs/gmxlib/txtdump.c

diff --git a/src/gmxlib/typedefs.c b/src/gromacs/gmxlib/typedefs.c
similarity index 100%
rename from src/gmxlib/typedefs.c
rename to src/gromacs/gmxlib/typedefs.c

diff --git a/src/gmxlib/version.h b/src/gromacs/gmxlib/version.h
similarity index 100%
rename from src/gmxlib/version.h
rename to src/gromacs/gmxlib/version.h

diff --git a/src/gmxlib/viewit.c b/src/gromacs/gmxlib/viewit.c
similarity index 100%
rename from src/gmxlib/viewit.c
rename to src/gromacs/gmxlib/viewit.c

diff --git a/src/gmxlib/vmddlopen.c b/src/gromacs/gmxlib/vmddlopen.c
similarity index 100%
rename from src/gmxlib/vmddlopen.c
rename to src/gromacs/gmxlib/vmddlopen.c

diff --git a/src/gmxlib/vmdio.c b/src/gromacs/gmxlib/vmdio.c
similarity index 100%
rename from src/gmxlib/vmdio.c
rename to src/gromacs/gmxlib/vmdio.c

diff --git a/src/gmxlib/warninp.c b/src/gromacs/gmxlib/warninp.c
similarity index 100%
rename from src/gmxlib/warninp.c
rename to src/gromacs/gmxlib/warninp.c

diff --git a/src/gmxlib/wgms.c b/src/gromacs/gmxlib/wgms.c
similarity index 100%
rename from src/gmxlib/wgms.c
rename to src/gromacs/gmxlib/wgms.c

diff --git a/src/gmxlib/wman.c b/src/gromacs/gmxlib/wman.c
similarity index 100%
rename from src/gmxlib/wman.c
rename to src/gromacs/gmxlib/wman.c

diff --git a/src/gmxlib/writeps.c b/src/gromacs/gmxlib/writeps.c
similarity index 100%
rename from src/gmxlib/writeps.c
rename to src/gromacs/gmxlib/writeps.c

diff --git a/src/gmxlib/xdrd.c b/src/gromacs/gmxlib/xdrd.c
similarity index 100%
rename from src/gmxlib/xdrd.c
rename to src/gromacs/gmxlib/xdrd.c

diff --git a/src/gmxlib/xtcio.c b/src/gromacs/gmxlib/xtcio.c
similarity index 100%
rename from src/gmxlib/xtcio.c
rename to src/gromacs/gmxlib/xtcio.c

diff --git a/src/gmxlib/xvgr.c b/src/gromacs/gmxlib/xvgr.c
similarity index 100%
rename from src/gmxlib/xvgr.c
rename to src/gromacs/gmxlib/xvgr.c

diff --git a/src/gromacs/libgromacs.pc.cmakein b/src/gromacs/libgromacs.pc.cmakein
index 9723b4655125df5f7f565dcd21846456fca9b6b9..97c601f781b2b15d27f360eda94e6ad2325b1e3e 100644 (file)
--- a/src/gromacs/libgromacs.pc.cmakein
+++ b/src/gromacs/libgromacs.pc.cmakein
@@ -5,7 +5,7 @@ Name: libgromacs
 Description: Gromacs library
 URL: http://www.gromacs.org
 Version: @PROJECT_VERSION@
-Requires: libgmx@LIBSUFFIX@ @PKG_FFT@ @PKG_XML@
+Requires: @PKG_FFT@ @PKG_XML@
 Libs.private: -lm @CMAKE_THREAD_LIBS_INIT@
 Libs: -L${libdir} -lmd@LIBSUFFIX@ @PKG_FFT_LIBS@
 Cflags: -I${includedir} @PKG_CFLAGS@

diff --git a/src/gmxlib/version.c.cmakein b/src/gromacs/version.c.cmakein
similarity index 83%
rename from src/gmxlib/version.c.cmakein
rename to src/gromacs/version.c.cmakein
index 8aa4895973796e616b6bc73be1acad9338bda645..c59f8b051372ae8969e39108058c2b81605e675b 100644 (file)
--- a/src/gmxlib/version.c.cmakein
+++ b/src/gromacs/version.c.cmakein
@@ -1,4 +1,4 @@
-#include "version.h"
+#include "gromacs/gmxlib/version.h"
 const char _gmx_ver_string[] = "VERSION @GMX_PROJECT_VERSION_STR@";
 const char _gmx_full_git_hash[] = "@GMX_GIT_HEAD_HASH@";
 const char _gmx_central_base_hash[] = "@GMX_GIT_REMOTE_HASH@";

diff --git a/src/tools/CMakeLists.txt b/src/tools/CMakeLists.txt
index 0e763402c1ebbfd4dd63a2b7943d42e43a72a889..45f7671e95e9fe0c1102074adb4241276330ed63 100644 (file)
--- a/src/tools/CMakeLists.txt
+++ b/src/tools/CMakeLists.txt
@@ -32,7 +32,7 @@ add_library(gmxana
             gmx_pme_error.c    )
 
 
-target_link_libraries(gmxana gmx libgromacs)
+target_link_libraries(gmxana libgromacs)
 set_target_properties(gmxana PROPERTIES OUTPUT_NAME "gmxana${GMX_LIBS_SUFFIX}" SOVERSION ${SOVERSION} INSTALL_NAME_DIR "${LIB_INSTALL_DIR}")
 
 # List of programs with single corresponding .c source file,