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Added NHE to OPLS/AA pdb2gmx hydrogen database
author
Mark Abraham
<Mark.J.Abraham@gmail.com>
Thu, 20 Jan 2011 09:46:02 +0000
(20:46 +1100)
committer
Mark Abraham
<Mark.J.Abraham@gmail.com>
Thu, 20 Jan 2011 09:46:02 +0000
(20:46 +1100)
The pdb2gmx residue database includes the NH2 capping group, and its
synonym NHE. The latter was missing from the .hdb, which is now fixed.
share/top/oplsaa.ff/aminoacids.hdb
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diff --git
a/share/top/oplsaa.ff/aminoacids.hdb
b/share/top/oplsaa.ff/aminoacids.hdb
index 1850a0d14f55237d8450a6172f409c0d9d1fa9e2..a7d8b1d72c02ba6f51159e7b138838599cef5aa3 100644
(file)
--- a/
share/top/oplsaa.ff/aminoacids.hdb
+++ b/
share/top/oplsaa.ff/aminoacids.hdb
@@
-157,6
+157,8
@@
NAC 2
3 4 HH3 CH3 N -C
NH2 1
2 3 H N -C -CA
+NHE 1
+2 3 H N -C -CA
PHE 8
1 1 H N -C CA
1 5 HA CA N C CB