-.TH do_dssp 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH do_dssp 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
do_dssp - assigns secondary structure and calculates solvent accessible surface area
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3do_dssp\fP
.BI "\-f" " traj.xtc "
-.TH editconf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH editconf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
editconf - edits the box and writes subgroups
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3editconf\fP
.BI "\-f" " conf.gro "
-.TH eneconv 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH eneconv 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
eneconv - converts energy files
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3eneconv\fP
.BI "\-f" " ener.edr "
-.TH g_anadock 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_anadock 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_anadock - cluster structures from Autodock runs
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_anadock\fP
.BI "\-f" " eiwit.pdb "
-.TH g_anaeig 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_anaeig 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_anaeig - analyzes the eigenvectors
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_anaeig\fP
.BI "\-v" " eigenvec.trr "
-.TH g_analyze 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_analyze 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_analyze - analyzes data sets
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_analyze\fP
.BI "\-f" " graph.xvg "
-.TH g_angle 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_angle 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_angle - calculates distributions and correlations for angles and dihedrals
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_angle\fP
.BI "\-f" " traj.xtc "
-.TH g_bar 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_bar 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_bar - calculates free energy difference estimates through Bennett's acceptance ratio
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_bar\fP
.BI "\-f" " dhdl.xvg "
-.TH g_bond 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_bond 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_bond - calculates distances between atoms
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_bond\fP
.BI "\-f" " traj.xtc "
-.TH g_bundle 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_bundle 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_bundle - analyzes bundles of axes, e.g. helices
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_bundle\fP
.BI "\-f" " traj.xtc "
-.TH g_chi 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_chi 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_chi - calculates everything you want to know about chi and other dihedrals
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_chi\fP
.BI "\-s" " conf.gro "
-.TH g_cluster 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_cluster 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_cluster - clusters structures
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_cluster\fP
.BI "\-f" " traj.xtc "
-.TH g_clustsize 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_clustsize 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_clustsize - calculate size distributions of atomic clusters
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_clustsize\fP
.BI "\-f" " traj.xtc "
-.TH g_confrms 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_confrms 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_confrms - fits two structures and calculates the rmsd
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_confrms\fP
.BI "\-f1" " conf1.gro "
-.TH g_covar 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_covar 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_covar - calculates and diagonalizes the covariance matrix
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_covar\fP
.BI "\-f" " traj.xtc "
-.TH g_current 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_current 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_current - calculate current autocorrelation function of system
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_current\fP
.BI "\-s" " topol.tpr "
-.TH g_density 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_density 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_density - calculates the density of the system
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_density\fP
.BI "\-f" " traj.xtc "
-.TH g_densmap 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_densmap 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_densmap - calculates 2D planar or axial-radial density maps
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_densmap\fP
.BI "\-f" " traj.xtc "
-.TH g_dielectric 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_dielectric 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_dielectric - calculates frequency dependent dielectric constants
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_dielectric\fP
.BI "\-f" " dipcorr.xvg "
-.TH g_dih 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_dih 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_dih - analyzes dihedral transitions
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_dih\fP
.BI "\-f" " traj.xtc "
-.TH g_dipoles 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_dipoles 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_dipoles - computes the total dipole plus fluctuations
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_dipoles\fP
.BI "\-en" " ener.edr "
-.TH g_disre 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_disre 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_disre - analyzes distance restraints
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_disre\fP
.BI "\-s" " topol.tpr "
-.TH g_dist 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_dist 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_dist - calculates the distances between the centers of mass of two groups
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_dist\fP
.BI "\-f" " traj.xtc "
-.TH g_dyndom 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_dyndom 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_dyndom - interpolate and extrapolate structure rotations
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_dyndom\fP
.BI "\-f" " dyndom.pdb "
-.TH g_enemat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_enemat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_enemat - extracts an energy matrix from an energy file
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_enemat\fP
.BI "\-f" " ener.edr "
-.TH g_energy 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_energy 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_energy - writes energies to xvg files and displays averages
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_energy\fP
.BI "\-f" " ener.edr "
-.TH g_filter 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_filter 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_filter - frequency filters trajectories, useful for making smooth movies
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_filter\fP
.BI "\-f" " traj.xtc "
-.TH g_gyrate 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_gyrate 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_gyrate - calculates the radius of gyration
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_gyrate\fP
.BI "\-f" " traj.xtc "
-.TH g_h2order 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_h2order 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_h2order - computes the orientation of water molecules
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_h2order\fP
.BI "\-f" " traj.xtc "
-.TH g_hbond 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_hbond 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_hbond - computes and analyzes hydrogen bonds
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_hbond\fP
.BI "\-f" " traj.xtc "
-.TH g_helix 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_helix 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_helix - calculates basic properties of alpha helices
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_helix\fP
.BI "\-s" " topol.tpr "
-.TH g_helixorient 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_helixorient 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_helixorient - calculates local pitch/bending/rotation/orientation inside helices
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_helixorient\fP
.BI "\-s" " topol.tpr "
-.TH g_lie 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_lie 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_lie - free energy estimate from linear combinations
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_lie\fP
.BI "\-f" " ener.edr "
-.TH g_mdmat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_mdmat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_mdmat - calculates residue contact maps
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_mdmat\fP
.BI "\-f" " traj.xtc "
-.TH g_membed 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_membed 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_membed - embeds a protein into a lipid bilayer
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_membed\fP
.BI "\-f" " into_mem.tpr "
-.TH g_mindist 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_mindist 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_mindist - calculates the minimum distance between two groups
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_mindist\fP
.BI "\-f" " traj.xtc "
-.TH g_morph 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_morph 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_morph - linear interpolation of conformations
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_morph\fP
.BI "\-f1" " conf1.gro "
-.TH g_msd 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_msd 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_msd - calculates mean square displacements
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_msd\fP
.BI "\-f" " traj.xtc "
-.TH g_nmeig 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_nmeig 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_nmeig - diagonalizes the Hessian
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_nmeig\fP
.BI "\-f" " hessian.mtx "
-.TH g_nmens 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_nmens 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_nmens - generates an ensemble of structures from the normal modes
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_nmens\fP
.BI "\-v" " eigenvec.trr "
-.TH g_nmtraj 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_nmtraj 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_nmtraj - generate a virtual trajectory from an eigenvector
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_nmtraj\fP
.BI "\-s" " topol.tpr "
-.TH g_order 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_order 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_order - computes the order parameter per atom for carbon tails
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_order\fP
.BI "\-f" " traj.xtc "
-.TH g_polystat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_polystat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_polystat - calculates static properties of polymers
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_polystat\fP
.BI "\-s" " topol.tpr "
-.TH g_potential 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_potential 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_potential - calculates the electrostatic potential across the box
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_potential\fP
.BI "\-f" " traj.xtc "
-.TH g_principal 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_principal 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_principal - calculates axes of inertia for a group of atoms
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_principal\fP
.BI "\-f" " traj.xtc "
-.TH g_protonate 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_protonate 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_protonate - protonates structures
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_protonate\fP
.BI "\-s" " topol.tpr "
-.TH g_rama 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_rama 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_rama - computes Ramachandran plots
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_rama\fP
.BI "\-f" " traj.xtc "
-.TH g_rdf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_rdf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_rdf - calculates radial distribution functions
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_rdf\fP
.BI "\-f" " traj.xtc "
-.TH g_rms 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_rms 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_rms - calculates rmsd's with a reference structure and rmsd matrices
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_rms\fP
.BI "\-s" " topol.tpr "
-.TH g_rmsdist 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_rmsdist 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-beta4-2010-08-26 09:43:57 +0200-33da7ba-dirty"
.SH NAME
g_rmsdist - calculates atom pair distances averaged with power \-2, \-3 or \-6
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5-beta4-2010-08-26 09:43:57 +0200-33da7ba-dirty
.SH SYNOPSIS
\f3g_rmsdist\fP
.BI "\-f" " traj.xtc "
-.TH g_rmsf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_rmsf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_rmsf - calculates atomic fluctuations
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_rmsf\fP
.BI "\-f" " traj.xtc "
-.TH g_rotacf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_rotacf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_rotacf - calculates the rotational correlation function for molecules
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_rotacf\fP
.BI "\-f" " traj.xtc "
-.TH g_rotmat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_rotmat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-beta4-2010-08-26 09:43:57 +0200-33da7ba-dirty"
.SH NAME
g_rotmat - plots the rotation matrix for fitting to a reference structure
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5-beta4-2010-08-26 09:43:57 +0200-33da7ba-dirty
.SH SYNOPSIS
\f3g_rotmat\fP
.BI "\-f" " traj.xtc "
-.TH g_saltbr 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_saltbr 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_saltbr - computes salt bridges
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_saltbr\fP
.BI "\-f" " traj.xtc "
-.TH g_sas 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_sas 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_sas - computes solvent accessible surface area
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_sas\fP
.BI "\-f" " traj.xtc "
-.TH g_sdf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_sdf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_sdf - calculates the spatial distribution function (faster than g_spatial)
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_sdf\fP
.BI "\-f" " traj.xtc "
-.TH g_select 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_select 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_select - selects groups of atoms based on flexible textual selections
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_select\fP
.BI "\-f" " traj.xtc "
-.TH g_sgangle 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_sgangle 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_sgangle - computes the angle and distance between two groups
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_sgangle\fP
.BI "\-f" " traj.xtc "
-.TH g_sham 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_sham 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_sham - read/write xmgr and xvgr data sets
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_sham\fP
.BI "\-f" " graph.xvg "
-.TH g_sigeps 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_sigeps 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_sigeps - convert c6/12 or c6/cn combinations to and from sigma/epsilon
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_sigeps\fP
.BI "\-o" " potje.xvg "
-.TH g_sorient 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_sorient 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_sorient - analyzes solvent orientation around solutes
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_sorient\fP
.BI "\-f" " traj.xtc "
-.TH g_spatial 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_spatial 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_spatial - calculates the spatial distribution function (more control than g_sdf)
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_spatial\fP
.BI "\-s" " topol.tpr "
-.TH g_spol 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_spol 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_spol - analyzes solvent dipole orientation and polarization around solutes
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_spol\fP
.BI "\-f" " traj.xtc "
-.TH g_tcaf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_tcaf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_tcaf - calculates viscosities of liquids
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_tcaf\fP
.BI "\-f" " traj.trr "
-.TH g_traj 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_traj 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_traj - plots x, v and f of selected atoms/groups (and more) from a trajectory
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_traj\fP
.BI "\-f" " traj.xtc "
-.TH g_tune_pme 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_tune_pme 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_tune_pme - time mdrun as a function of PME nodes to optimize settings
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_tune_pme\fP
.BI "\-p" " perf.out "
-.TH g_vanhove 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_vanhove 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_vanhove - calculates Van Hove displacement functions
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_vanhove\fP
.BI "\-f" " traj.xtc "
-.TH g_velacc 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_velacc 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_velacc - calculates velocity autocorrelation functions
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_velacc\fP
.BI "\-f" " traj.trr "
-.TH g_wham 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_wham 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_wham - weighted histogram analysis after umbrella sampling
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_wham\fP
.BI "\-ix" " pullx\-files.dat "
-.TH g_wheel 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_wheel 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_wheel - plots helical wheels
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_wheel\fP
.BI "\-f" " nnnice.dat "
-.TH g_x2top 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_x2top 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_x2top - generates a primitive topology from coordinates
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_x2top\fP
.BI "\-f" " conf.gro "
-.TH g_xrama 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH g_xrama 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
g_xrama - shows animated Ramachandran plots
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3g_xrama\fP
.BI "\-f" " traj.xtc "
-.TH genbox 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH genbox 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
genbox - solvates a system
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3genbox\fP
.BI "\-cp" " protein.gro "
-.TH genconf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH genconf 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
genconf - multiplies a conformation in 'random' orientations
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3genconf\fP
.BI "\-f" " conf.gro "
-.TH genion 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH genion 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
genion - generates mono atomic ions on energetically favorable positions
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3genion\fP
.BI "\-s" " topol.tpr "
-.TH genrestr 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH genrestr 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
genrestr - generates position restraints or distance restraints for index groups
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3genrestr\fP
.BI "\-f" " conf.gro "
-.TH gmxcheck 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH gmxcheck 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
gmxcheck - checks and compares files
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3gmxcheck\fP
.BI "\-f" " traj.xtc "
-.TH gmxdump 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH gmxdump 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
gmxdump - makes binary files human readable
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3gmxdump\fP
.BI "\-s" " topol.tpr "
-.TH grompp 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH grompp 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
grompp - makes a run input file
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3grompp\fP
.BI "\-f" " grompp.mdp "
-.TH make_edi 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH make_edi 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
make_edi - generate input files for essential dynamics sampling
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3make_edi\fP
.BI "\-f" " eigenvec.trr "
-.TH make_ndx 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH make_ndx 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
make_ndx - makes index files
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3make_ndx\fP
.BI "\-f" " conf.gro "
-.TH mdrun 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH mdrun 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
mdrun - performs a simulation, do a normal mode analysis or an energy minimization
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3mdrun\fP
.BI "\-s" " topol.tpr "
-.TH mk_angndx 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH mk_angndx 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
mk_angndx - generates index files for g_angle
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3mk_angndx\fP
.BI "\-s" " topol.tpr "
-.TH ngmx 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH ngmx 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
ngmx - displays a trajectory
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3ngmx\fP
.BI "\-f" " traj.xtc "
-.TH pdb2gmx 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH pdb2gmx 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
pdb2gmx - converts pdb files to topology and coordinate files
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3pdb2gmx\fP
.BI "\-f" " eiwit.pdb "
-.TH tpbconv 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH tpbconv 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
tpbconv - makes a run input file for restarting a crashed run
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3tpbconv\fP
.BI "\-s" " topol.tpr "
-.TH trjcat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH trjcat 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
trjcat - concatenates trajectory files
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3trjcat\fP
.BI "\-f" " traj.xtc "
-.TH trjconv 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH trjconv 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
trjconv - converts and manipulates trajectory files
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3trjconv\fP
.BI "\-f" " traj.xtc "
-.TH trjorder 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH trjorder 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
trjorder - orders molecules according to their distance to a group
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3trjorder\fP
.BI "\-f" " traj.xtc "
-.TH xpm2ps 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty"
+.TH xpm2ps 1 "Thu 26 Aug 2010" "" "GROMACS suite, VERSION 4.5"
.SH NAME
xpm2ps - converts XPM matrices to encapsulated postscript (or XPM)
-.B VERSION 4.5-2010-08-26 16:44:17 +1000-42fb684-dirty
+.B VERSION 4.5
.SH SYNOPSIS
\f3xpm2ps\fP
.BI "\-f" " root.xpm "