Fixed typos in documentation.

IssueID #814

Change-Id: If05a4a47509ad087c8de41305666324287e7a70a

diff --git a/src/tools/gmx_analyze.c b/src/tools/gmx_analyze.c
index 08c16d1a115f928220d7bf34b7e38e5172fd3cfe..842e3f2ce5a57d4c6fd97b1be8d2aefe4dca5aac 100644 (file)
--- a/src/tools/gmx_analyze.c
+++ b/src/tools/gmx_analyze.c
@@ -955,7 +955,7 @@ int gmx_analyze(int argc,char *argv[])
     "Option [TT]-gem[tt] fits bimolecular rate constants ka and kb",
     "(and optionally kD) to the hydrogen bond autocorrelation function",
     "according to the reversible geminate recombination model. Removal of",
-    "the ballistic component first is strongly adviced. The model is presented in",
+    "the ballistic component first is strongly advised. The model is presented in",
     "O. Markovitch, J. Chem. Phys. 129:084505, 2008.[PAR]",
 
     "Option [TT]-filter[tt] prints the RMS high-frequency fluctuation",

diff --git a/src/tools/gmx_dist.c b/src/tools/gmx_dist.c
index eef0c91e15fa1e399a714e09bf908c397f11d0a8..109952bb55997a48080ba8e21af9508c2c87bb5f 100644 (file)
--- a/src/tools/gmx_dist.c
+++ b/src/tools/gmx_dist.c
@@ -77,7 +77,7 @@ int gmx_dist(int argc,char *argv[])
     "With options [TT]-lt[tt] and [TT]-dist[tt] the number of contacts",
     "of all atoms in group 2 that are closer than a certain distance",
     "to the center of mass of group 1 are plotted as a function of the time",
-    "that the contact was continously present.[PAR]",
+    "that the contact was continuously present.[PAR]",
     "Other programs that calculate distances are [TT]g_mindist[tt]",
     "and [TT]g_bond[tt]."
   };

diff --git a/src/tools/gmx_hydorder.c b/src/tools/gmx_hydorder.c
index b61d93874e4df9f112fb1b428f5f4bb66d4897bc..305222e0b01a820c5e2029423e45de9e6853a87b 100644 (file)
--- a/src/tools/gmx_hydorder.c
+++ b/src/tools/gmx_hydorder.c
@@ -558,8 +558,8 @@ static void writeraw(real ***surf, int tblocks,int xbins, int ybins,char **fnms)
 int gmx_hydorder(int argc,char *argv[])
 {
     static const char *desc[] = {
-        "The tetrahedrality order parameters can be determined",
-        "around an atom. Both angle an distance order parameters are calculated. See",
+        "g_hydorder computes the tetrahedrality order parameters around a ",
+        "given atom. Both angle an distance order parameters are calculated. See",
         "P.-L. Chau and A.J. Hardwick, Mol. Phys., 93, (1998), 511-518.",
         "for more details.[BR]"
         "This application calculates the orderparameter in a 3d-mesh in the box, and",

diff --git a/src/tools/gmx_mindist.c b/src/tools/gmx_mindist.c
index 35c2bb090ffde982ab37a4ee74d938507fa97963..be8c231e6d0cf68c0f0ea5a9ec57e528d046fbd2 100644 (file)
--- a/src/tools/gmx_mindist.c
+++ b/src/tools/gmx_mindist.c
@@ -485,7 +485,7 @@ int gmx_mindist(int argc,char *argv[])
     "(between any pair of atoms from the respective groups)",
     "and the number of contacts within a given",
     "distance are written to two separate output files.",
-    "With the [TT]-group[tt] option a contact of an atom an other group",
+    "With the [TT]-group[tt] option a contact of an atom in another group",
     "with multiple atoms in the first group is counted as one contact",
     "instead of as multiple contacts.",
     "With [TT]-or[tt], minimum distances to each residue in the first",

diff --git a/src/tools/gmx_tune_pme.c b/src/tools/gmx_tune_pme.c
index 8549bb32d5f85d0dd4cb324e42a63cff08c39ea2..318738757d4f2637866794d6add1e831d714f2f2 100644 (file)
--- a/src/tools/gmx_tune_pme.c
+++ b/src/tools/gmx_tune_pme.c
@@ -2205,7 +2205,7 @@ int gmx_tune_pme(int argc,char *argv[])
       { "-simsteps", FALSE, etGMX_LARGE_INT, {&new_sim_nsteps},
         "If non-negative, perform this many steps in the real run (overwrites nsteps from [TT].tpr[tt], add [TT].cpt[tt] steps)" }, 
       { "-launch",   FALSE, etBOOL, {&bLaunch},
-        "Lauch the real simulation after optimization" },
+        "Launch the real simulation after optimization" },
       /******************/
       /* mdrun options: */
       /******************/

diff --git a/src/tools/gmx_wham.c b/src/tools/gmx_wham.c
index 54393e27dc28f2ca2773327484b67c46d417a526..68b4b7ef3e08b5d267e64e9ce3c98801bd05b9e2 100644 (file)
--- a/src/tools/gmx_wham.c
+++ b/src/tools/gmx_wham.c
@@ -2562,7 +2562,7 @@ int gmx_wham(int argc,char *argv[])
         "to the file defined with [TT]-oiact[tt]. In verbose mode, all ",
         "autocorrelation functions (ACFs) are written to [TT]hist_autocorr.xvg[tt]. ",
         "Because the IACTs can be severely underestimated in case of limited ",
-        "sampling, option [TT]-acsig[tt] allows to smooth the IACTs along the ",
+        "sampling, option [TT]-acsig[tt] allows one to smooth the IACTs along the ",
         "reaction coordinate with a Gaussian ([GRK]sigma[grk] provided with [TT]-acsig[tt], ",
         "see output in [TT]iact.xvg[tt]). Note that the IACTs are estimated by simple ",
         "integration of the ACFs while the ACFs are larger 0.05.",