Made sure all source files have some copyright header and include config.h

diff --git a/src/gmxlib/gmx_matrix.c b/src/gmxlib/gmx_matrix.c
index c0a71b686ba98061fe468a401ac545e5f3ceefe4..3ef4abd58f822bb4a6335d1952b28be7ccd2e382 100644 (file)
--- a/src/gmxlib/gmx_matrix.c
+++ b/src/gmxlib/gmx_matrix.c
@@ -33,6 +33,10 @@
  * And Hey:
  * Groningen Machine for Chemical Simulation
  */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 #include <stdlib.h>
 #include "typedefs.h"
 #include "smalloc.h"

diff --git a/src/gmxlib/gmx_random.c b/src/gmxlib/gmx_random.c
index b4fe645ca7c1c83284fadc9020398cd2c27ef594..7322e7bbddabd02083ad20f372cb0d96486c3113 100644 (file)
--- a/src/gmxlib/gmx_random.c
+++ b/src/gmxlib/gmx_random.c
@@ -1,3 +1,38 @@
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
+ */
 #ifdef HAVE_CONFIG_H
 #include <config.h>
 #endif

diff --git a/src/gmxlib/invsqrt_test.c b/src/gmxlib/invsqrt_test.c
index 85fb6d8635ae92a3903ce5c32e8374e6ba8b6fea..1313442a3f3c2b623ac00ed51e4b10c3586e517d 100644 (file)
--- a/src/gmxlib/invsqrt_test.c
+++ b/src/gmxlib/invsqrt_test.c
@@ -33,6 +33,9 @@
  * GROningen Mixture of Alchemy and Childrens' Stories
  */
 /* This file is completely threadsafe - keep it that way! */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
 
 #include "vec.h"
 

diff --git a/src/gmxlib/md5.c b/src/gmxlib/md5.c
index c35d96c5ef54848f670132e6660c0f9b58e291a2..2942632f9bad4774cf093c279cb928d593cc24fe 100644 (file)
--- a/src/gmxlib/md5.c
+++ b/src/gmxlib/md5.c
@@ -1,3 +1,44 @@
+/*
+ * 
+ *             This source code is distributed with
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                           VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2010, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ *
+ * Gromacs is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * GROningen Mixture of Alchemy and Childrens' Stories
+ */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+#ifdef GMX_INTEGER_BIG_ENDIAN
+#  define ARCH_IS_BIG_ENDIAN
+#endif
+
 /*
   Copyright (C) 1999, 2000, 2002 Aladdin Enterprises.  All rights reserved.
 

diff --git a/src/gmxlib/selection/selhelp.c b/src/gmxlib/selection/selhelp.c
index 561eae76c4976c9835ecf5773ff676da8404f4ce..343ac9601213d7ac9af346fd4d909bc31525c43e 100644 (file)
--- a/src/gmxlib/selection/selhelp.c
+++ b/src/gmxlib/selection/selhelp.c
@@ -31,6 +31,10 @@
 /*! \internal \file
  * \brief Implementation of functions in selhelp.c.
  */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 #include <macros.h>
 #include <string2.h>
 #include <wman.h>

diff --git a/src/gmxlib/statistics/gmx_statistics_test.c b/src/gmxlib/statistics/gmx_statistics_test.c
index 1129db07af331f7e1c85fda7ebd1d6a1b1a8590c..2c13dabff97eb8df9b48f06784ab5a7821344942 100644 (file)
--- a/src/gmxlib/statistics/gmx_statistics_test.c
+++ b/src/gmxlib/statistics/gmx_statistics_test.c
@@ -1,3 +1,42 @@
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
+ */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 #include <stdio.h>
 #include "typedefs.h"
 #include "smalloc.h"

diff --git a/src/gmxlib/vmddlopen.c b/src/gmxlib/vmddlopen.c
index e4e6c023e6c68e2de66f77ff6c756e17841ce4e6..c07ae7e53eceab63361f556b7f258f727239e390 100644 (file)
--- a/src/gmxlib/vmddlopen.c
+++ b/src/gmxlib/vmddlopen.c
@@ -15,6 +15,9 @@
  * And Hey:
  * Gnomes, ROck Monsters And Chili Sauce
  */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
 
 
 /***************************************************************************

diff --git a/src/gmxlib/vmdio.c b/src/gmxlib/vmdio.c
index b0c372db8d003ac9223021f94487925cc92cb8fd..d4451a5be7275c141589ad1af01286dd51d8228b 100644 (file)
--- a/src/gmxlib/vmdio.c
+++ b/src/gmxlib/vmdio.c
@@ -15,6 +15,11 @@
  * And Hey:
  * Gnomes, ROck Monsters And Chili Sauce
  */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+
 
 /* Derived from PluginMgr.C and catdcd.c */
 

diff --git a/src/kernel/gmx_xml.c b/src/kernel/gmx_xml.c
index e7c485f404adc0d6fffd07addafb9cf9fc509192..871c02172af8e93d7d8b66bfb2ed2b7fd23f3feb 100644 (file)
--- a/src/kernel/gmx_xml.c
+++ b/src/kernel/gmx_xml.c
@@ -1,6 +1,42 @@
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
+ */
 #ifdef HAVE_CONFIG_H
 #include <config.h>
 #endif
+
 #include "gmx_fatal.h"
 
 

diff --git a/src/kernel/slater_S_integrals.c b/src/kernel/slater_S_integrals.c
index 88f1fed2ffe717475cc8273a576ad0370debdcc7..6c2ef7d88402e444f114fbd22e7f772332eba5ba 100644 (file)
--- a/src/kernel/slater_S_integrals.c
+++ b/src/kernel/slater_S_integrals.c
@@ -1,3 +1,43 @@
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
+ */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+
 /* slater_S_integrals.c (c) 2008 Paul J. van Maaren and David van der Spoel */
 #include <stdio.h>
 #include <math.h>

diff --git a/src/mdlib/fft5d.c b/src/mdlib/fft5d.c
index 731ed840e12ee9b9698fda419658e12a3edcc3bc..3248346ab95a855d50ed7d42520aa5eccde56ff9 100644 (file)
--- a/src/mdlib/fft5d.c
+++ b/src/mdlib/fft5d.c
@@ -1,10 +1,43 @@
 /* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
  */
-
 #ifdef HAVE_CONFIG_H
 #include <config.h>
 #endif
 
+
 #include <stdio.h>
 #include <stdlib.h>
 #include <string.h>

diff --git a/src/mdlib/genborn_sse2_double.c b/src/mdlib/genborn_sse2_double.c
index a0d319ea14d47cb4902c986fa057ca2d11b5df0a..c2673c972ca797048016a7aedf499738201e3c9f 100644 (file)
--- a/src/mdlib/genborn_sse2_double.c
+++ b/src/mdlib/genborn_sse2_double.c
@@ -1,3 +1,38 @@
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
+ */
 #ifdef HAVE_CONFIG_H
 #include <config.h>
 #endif

diff --git a/src/mdlib/gmx_qhop_db_test.c b/src/mdlib/gmx_qhop_db_test.c
index 8c503c54b710ea7989b2a5e20b34f6554759b19b..8219672a839783a71932c2b94acffd70a138201b 100644 (file)
--- a/src/mdlib/gmx_qhop_db_test.c
+++ b/src/mdlib/gmx_qhop_db_test.c
@@ -1,3 +1,42 @@
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
+ */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 #include <stdio.h>
 #include <stdlib.h>
 #include "gmx_fatal.h"

diff --git a/src/mdlib/gmx_qhop_parm.c b/src/mdlib/gmx_qhop_parm.c
index 4fb43ba812af957854f7b778c4f0fd424cc23823..68a6b37983f4298755c61959234e5cba71b4626a 100644 (file)
--- a/src/mdlib/gmx_qhop_parm.c
+++ b/src/mdlib/gmx_qhop_parm.c
@@ -1,3 +1,42 @@
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
+ */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 #include <stdlib.h>
 #include <string.h>
 #include "smalloc.h"

diff --git a/src/mdlib/gmx_qhop_xml.c b/src/mdlib/gmx_qhop_xml.c
index cea8d559c36bce779ad29108889f921476f1d3d2..c641503065732d5a3a28ca21ea21eb1d861232da 100644 (file)
--- a/src/mdlib/gmx_qhop_xml.c
+++ b/src/mdlib/gmx_qhop_xml.c
@@ -1,3 +1,43 @@
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
+ */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+
 #include <string.h>
 #include "gmx_fatal.h"
 #include "smalloc.h"

diff --git a/src/mdlib/groupcoord.c b/src/mdlib/groupcoord.c
index 1449e01c8fded3ffae067985fa159dde7a9dc9e0..2c8358e5595883a7e155332c01e1b367e2c40e18 100644 (file)
--- a/src/mdlib/groupcoord.c
+++ b/src/mdlib/groupcoord.c
@@ -1,5 +1,5 @@
-/*  -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
- *
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
  * 
  *                This source code is part of
  * 
@@ -7,6 +7,7 @@
  * 
  *          GROningen MAchine for Chemical Simulations
  * 
+ *                        VERSION 4.5
  * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
  * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
  * Copyright (c) 2001-2008, The GROMACS development team,
@@ -30,8 +31,12 @@
  * For more info, check our website at http://www.gromacs.org
  * 
  * And Hey:
- * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon
+ * Groningen Machine for Chemical Simulation
  */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 
 #include "groupcoord.h"
 #include "mpelogging.h"

diff --git a/src/mdlib/qm_orca.c b/src/mdlib/qm_orca.c
index fa3278fa842121a3e5718664e64b89da811448f4..4066b74e85e6e5a35baa5b7427418333b3a547ec 100644 (file)
--- a/src/mdlib/qm_orca.c
+++ b/src/mdlib/qm_orca.c
@@ -1,3 +1,38 @@
+/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+ * $Id: gmx_matrix.c,v 1.4 2008/12/02 18:27:57 spoel Exp $
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2008, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Groningen Machine for Chemical Simulation
+ */
 #ifdef HAVE_CONFIG_H
 #include <config.h>
 #endif

diff --git a/src/tools/geminate.c b/src/tools/geminate.c
index 2ec855c43210e11d356a5bba90286bcfa7b4a1d6..4a0452f390141a1a5aba9ac59e57b1c2a22f5df8 100644 (file)
--- a/src/tools/geminate.c
+++ b/src/tools/geminate.c
@@ -1,3 +1,37 @@
+/*
+ * 
+ *                This source code is part of
+ * 
+ *                 G   R   O   M   A   C   S
+ * 
+ *          GROningen MAchine for Chemical Simulations
+ * 
+ *                        VERSION 4.5
+ * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
+ * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
+ * Copyright (c) 2001-2004, The GROMACS development team,
+ * check out http://www.gromacs.org for more information.
+ 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * If you want to redistribute modifications, please consider that
+ * scientific software is very special. Version control is crucial -
+ * bugs must be traceable. We will be happy to consider code for
+ * inclusion in the official distribution, but derived work must not
+ * be called official GROMACS. Details are found in the README & COPYING
+ * files - if they are missing, get the official version at www.gromacs.org.
+ * 
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the papers on the package - you can find them in the top README file.
+ * 
+ * For more info, check our website at http://www.gromacs.org
+ * 
+ * And Hey:
+ * Green Red Orange Magenta Azure Cyan Skyblue
+ */
 #ifdef HAVE_CONFIG_H
 #include <config.h>
 #endif
@@ -30,7 +64,7 @@
  * http://folding.bmc.uu.se) from code written by Omer Markovitch (email, url).
  * This is also the case with the function eq10v2().
  * 
- * The parts menetioned in the previous paragraph were contributed under a BSD license.
+ * The parts menetioned in the previous paragraph were contributed under the BSD license.
  */
 
 

diff --git a/src/tools/gmx_current.c b/src/tools/gmx_current.c
index 24fa06d64e3d859364eee570c70a631f642206c4..261b4b03aeaffd929a60703a2f60221ae8e30f81 100644 (file)
--- a/src/tools/gmx_current.c
+++ b/src/tools/gmx_current.c
@@ -35,6 +35,10 @@
  * finished FD 09/07/08
  *
  */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 
 #include "statutil.h"
 #include "typedefs.h"

diff --git a/src/tools/gmx_sdf.c b/src/tools/gmx_sdf.c
index 72245c57e8d7c1380da0ac13864f8d6d5b92fec4..32cfd14ac6cda36c43acc4577f119e826cff7546 100644 (file)
--- a/src/tools/gmx_sdf.c
+++ b/src/tools/gmx_sdf.c
@@ -14,6 +14,10 @@
  * And Hey:
  * Gyas ROwers Mature At Cryogenic Speed
  */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 
 
 #include <math.h>

diff --git a/src/tools/gmx_spatial.c b/src/tools/gmx_spatial.c
index 2b8d748306062249ab66b5b5ddf5e39aa9635e41..a57d789a50bc907d138b8d60bd1a5b275bdcbf93 100644 (file)
--- a/src/tools/gmx_spatial.c
+++ b/src/tools/gmx_spatial.c
@@ -32,6 +32,10 @@
  * And Hey:
  * Gyas ROwers Mature At Cryogenic Speed
  */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 
 
 #include "statutil.h"

diff --git a/src/tools/gmx_tune_pme.c b/src/tools/gmx_tune_pme.c
index f752e1c5141bcfbe6f0d1cd61789d00ad239e61b..4abf04bdf672d8419c5f4c71ad9e8f70fe81b5bc 100644 (file)
--- a/src/tools/gmx_tune_pme.c
+++ b/src/tools/gmx_tune_pme.c
@@ -31,6 +31,10 @@
  * And Hey:
  * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon
  */
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
 #include "statutil.h"
 #include "typedefs.h"
 #include "smalloc.h"

diff --git a/src/tools/gmx_wham.c b/src/tools/gmx_wham.c
index 95d7f767f1585d8b14bb909ad124216f27dc8c23..8a99ddc3a43f0e23a63f084f6fa74fd643c3c39f 100644 (file)
--- a/src/tools/gmx_wham.c
+++ b/src/tools/gmx_wham.c
@@ -33,13 +33,13 @@
  * Green Red Orange Magenta Azure Cyan Skyblue
  */
 
-#include <stdio.h>
-
 #ifdef HAVE_CONFIG_H
 #include <config.h>
 #endif
 
 
+#include <stdio.h>
+
 #include "statutil.h"
 #include "typedefs.h"
 #include "smalloc.h"