Currently the Verlet scheme does not support perturbed atoms.
This will be implemented soon.
Change-Id: Id8656aa680b6581882f5371514cdbd85f429c418
*/
mdatoms = init_mdatoms(fplog, mtop, inputrec->efep != efepNO);
+ if (mdatoms->nPerturbed > 0 && inputrec->cutoff_scheme == ecutsVERLET)
+ {
+ gmx_fatal(FARGS, "The Verlet cut-off scheme does not (yet) support free-energy calculations with perturbed atoms, only perturbed interactions. This will be implemented soon. Use the group scheme for now.");
+ }
+
/* Initialize the virtual site communication */
vsite = init_vsite(mtop, cr, FALSE);