bool isNearPeptide(const t_trxframe &fr, const t_pbc *pbc, const std::vector< gmx::RVec > &inputFrame,
gmx::AnalysisNeighborhood &nbhood, const std::vector< size_t > &inputIndex,
const std::vector< std::pair< std::string, size_t > > &inputColor) {
bool isNearPeptide(const t_trxframe &fr, const t_pbc *pbc, const std::vector< gmx::RVec > &inputFrame,
gmx::AnalysisNeighborhood &nbhood, const std::vector< size_t > &inputIndex,
const std::vector< std::pair< std::string, size_t > > &inputColor) {