-:orphan:
-
-GROMACS
-=======
-
-Description
------------
-
-**GROMACS** is a full-featured suite of programs to perform molecular dynamics
-simulations - in other words, to simulate the behavior of systems with hundreds
-to millions of particles, using Newtonian equations of motion.
-It is primarily used for research on proteins, lipids, and polymers, but can be
-applied to a wide variety of chemical and biological research questions.
-
-Synopsis
---------
-
-The following commands make up the GROMACS suite. Please refer to their
-individual man pages for further details.
-
-.. include:: bytopic.rst
-
-Additional documentation
-------------------------
-
-Consult the manual at <http://www.gromacs.org> for an introduction to molecular
-dynamics in general and GROMACS in particular, as well as an overview of the
-individual programs.
-
-References
-----------
-
-The development of GROMACS is mainly funded by academic research grants.
-To help us fund development, the authors humbly ask that you cite the GROMACS papers:
-
-H.J.C. Berendsen, D. van der Spoel and R. van Drunen. **GROMACS: A message-passing
-parallel molecular dynamics implementation**. Comp. Phys. Comm. *91*, 43-56 (1995)
-
-Erik Lindahl, Berk Hess and David van der Spoel. **GROMACS 3.0: A package for
-molecular simulation and trajectory analysis**. J. Mol. Mod. *7*, 306-317 (2001)
-
-B. Hess, C. Kutzner, D. van der Spoel, and E. Lindahl. **GROMACS 4: Algorithms for
-Highly Efficient, Load-Balanced, and Scalable Molecular Simulation**.
-J. Chem. Theory Comput. *4*, 3, 435-447 (2008),
-<http://dx.doi.org/10.1021/ct700301q>
-
-Authors
--------
-
-Current developers:
-
-David van der Spoel <spoel@gromacs.org>
-Berk Hess <hess@gromacs.org>
-Erik Lindahl <lindahl@gromacs.org>
-
-A full list of present and former contributors
-is available at <http://www.gromacs.org>
-
-This manual page is largely based on the GROMACS online reference, and the text
-was prepared originally by Nicholas Breen <nbreen@ofb.net>.
-
-Bugs
-----
-
-GROMACS has no major known bugs, but be warned that it stresses your CPU more
-than most software. Systems with slightly flaky hardware may prove unreliable
-while running heavy-duty simulations. If at all possible, please try to
-reproduce bugs on another machine before reporting them.