Doesn't work with AVX but I suspect this to be Cygwin's/GCC's fault.
GCC Bug 61730
Change-Id: I171e8414a8d65800804226034604a9973770bfdd
GMX_TEST_CFLAG(CFLAGS_WARN_REL "-Wno-array-bounds" GMXC_CFLAGS_RELEASE_ONLY)
# Since gcc 4.8 strict - false postives with old gmx_fatal. TODO: Remove in master
GMX_TEST_CFLAG(CFLAGS_WARN_UNINIT "-Wno-maybe-uninitialized" GMXC_CFLAGS)
GMX_TEST_CFLAG(CFLAGS_WARN_REL "-Wno-array-bounds" GMXC_CFLAGS_RELEASE_ONLY)
# Since gcc 4.8 strict - false postives with old gmx_fatal. TODO: Remove in master
GMX_TEST_CFLAG(CFLAGS_WARN_UNINIT "-Wno-maybe-uninitialized" GMXC_CFLAGS)
+ if(CYGWIN)
+ GMX_TEST_CFLAG(CFLAGS_WARN_SUBSCRIPT "-Wno-char-subscripts" GMXC_CFLAGS)
+ endif()
# new in gcc 4.5
GMX_TEST_CFLAG(CFLAGS_EXCESS_PREC "-fexcess-precision=fast" GMXC_CFLAGS_RELEASE)
GMX_TEST_CFLAG(CFLAGS_COPT "-fomit-frame-pointer -funroll-all-loops"
# new in gcc 4.5
GMX_TEST_CFLAG(CFLAGS_EXCESS_PREC "-fexcess-precision=fast" GMXC_CFLAGS_RELEASE)
GMX_TEST_CFLAG(CFLAGS_COPT "-fomit-frame-pointer -funroll-all-loops"
#
# This file is part of the GROMACS molecular simulation package.
#
#
# This file is part of the GROMACS molecular simulation package.
#
-# Copyright (c) 2012,2013, by the GROMACS development team, led by
+# Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
# and including many others, as listed in the AUTHORS file in the
# top-level source directory and at http://www.gromacs.org.
# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
# and including many others, as listed in the AUTHORS file in the
# top-level source directory and at http://www.gromacs.org.
include(CheckCXXSourceCompiles)
MACRO(GMX_TEST_CXX11 VARIABLE FLAG)
include(CheckCXXSourceCompiles)
MACRO(GMX_TEST_CXX11 VARIABLE FLAG)
- if(NOT WIN32)
- set(CXX11_FLAG "-std=c++0x")
- else()
set(CXX11_FLAG "/Qstd=c++0x")
set(CXX11_FLAG "/Qstd=c++0x")
+ elseif(CYGWIN)
+ set(CXX11_FLAG "-std=gnu++0x") #required for strdup
+ else()
+ set(CXX11_FLAG "-std=c++0x")
endif()
CHECK_CXX_COMPILER_FLAG("${CXX11_FLAG}" CXXFLAG_STD_CXX0X)
if(NOT CXXFLAG_STD_CXX0X)
endif()
CHECK_CXX_COMPILER_FLAG("${CXX11_FLAG}" CXXFLAG_STD_CXX0X)
if(NOT CXXFLAG_STD_CXX0X)
#include "gmx_header_config.h"
#include "gmx_header_config.h"
-/* Suppress Cygwin compiler warnings from using newlib version of
- * ctype.h */
-#ifdef GMX_CYGWIN
-#include <ctype.h>
-
-#undef isdigit
-#undef isstring
-#undef isspace
-#undef isalnum
-#undef isalpha
-#undef ispunct
-#undef isxdigit
-#undef isupper
-#undef islower
-#undef toupper
-#undef tolower
-#endif
-
#ifdef __cplusplus
extern "C" {
#endif
#ifdef __cplusplus
extern "C" {
#endif