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Miscellaneous doxygen fixes
author
Artem Zhmurov
<zhmurov@gmail.com>
Thu, 16 Sep 2021 09:43:12 +0000
(12:43 +0300)
committer
Andrey Alekseenko
<al42and@gmail.com>
Thu, 16 Sep 2021 14:43:12 +0000
(14:43 +0000)
src/gromacs/domdec/domdec.h
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src/gromacs/mdlib/lincs.cpp
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src/gromacs/mdlib/lincs_gpu.h
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src/gromacs/mdtypes/threaded_force_buffer.h
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src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel.h
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src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel_pruneonly.h
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diff --git
a/src/gromacs/domdec/domdec.h
b/src/gromacs/domdec/domdec.h
index 3fa388684230a4d90ce1406f56da1b07deb66732..ab5363ce3edb3dfeb4cd3b4825dc39facc8c7982 100644
(file)
--- a/
src/gromacs/domdec/domdec.h
+++ b/
src/gromacs/domdec/domdec.h
@@
-239,12
+239,12
@@
void dd_move_x_and_v_vsites(const gmx_domdec_t& dd, const matrix box, rvec* x, r
*/
gmx::ArrayRef<const int> dd_constraints_nlocalatoms(const gmx_domdec_t* dd);
*/
gmx::ArrayRef<const int> dd_constraints_nlocalatoms(const gmx_domdec_t* dd);
-/*! Const getter for the local topology checker
+/*!
\brief
Const getter for the local topology checker
*
* \returns Const handle to local topology checker */
const gmx::LocalTopologyChecker& dd_localTopologyChecker(const gmx_domdec_t& dd);
*
* \returns Const handle to local topology checker */
const gmx::LocalTopologyChecker& dd_localTopologyChecker(const gmx_domdec_t& dd);
-/*! Getter for the local topology checker
+/*!
\brief
Getter for the local topology checker
*
* \returns Handle to local topology checker */
gmx::LocalTopologyChecker* dd_localTopologyChecker(gmx_domdec_t* dd);
*
* \returns Handle to local topology checker */
gmx::LocalTopologyChecker* dd_localTopologyChecker(gmx_domdec_t* dd);
diff --git
a/src/gromacs/mdlib/lincs.cpp
b/src/gromacs/mdlib/lincs.cpp
index 81a0d1173cddc29af1225dbdc7eb78f044be84d3..a6ff2e0477b85831b66ae08caf92b51593bebfe9 100644
(file)
--- a/
src/gromacs/mdlib/lincs.cpp
+++ b/
src/gromacs/mdlib/lincs.cpp
@@
-85,8
+85,6
@@
#include "gromacs/utility/listoflists.h"
#include "gromacs/utility/pleasecite.h"
#include "gromacs/utility/listoflists.h"
#include "gromacs/utility/pleasecite.h"
-using namespace gmx; // TODO: Remove when this file is moved into gmx namespace
-
namespace gmx
{
namespace gmx
{
diff --git
a/src/gromacs/mdlib/lincs_gpu.h
b/src/gromacs/mdlib/lincs_gpu.h
index 5fc68b08d4642ab9e279ffb21211a4c1ce08c273..febb72ab222cdb5405e3db1398f93e8d7ad0f217 100644
(file)
--- a/
src/gromacs/mdlib/lincs_gpu.h
+++ b/
src/gromacs/mdlib/lincs_gpu.h
@@
-96,7
+96,7
@@
struct LincsGpuKernelParameters
DeviceBuffer<AtomPair> d_constraints;
//! Equilibrium distances for the constraints (GPU)
DeviceBuffer<float> d_constraintsTargetLengths;
DeviceBuffer<AtomPair> d_constraints;
//! Equilibrium distances for the constraints (GPU)
DeviceBuffer<float> d_constraintsTargetLengths;
- /*! Whether there are coupled constraints.
+ /*!
\brief
Whether there are coupled constraints.
*
* In SYCL, the accessors can not be initialized with an empty buffer.
* In case there are no coupled constraints, the respective buffers below are
*
* In SYCL, the accessors can not be initialized with an empty buffer.
* In case there are no coupled constraints, the respective buffers below are
diff --git
a/src/gromacs/mdtypes/threaded_force_buffer.h
b/src/gromacs/mdtypes/threaded_force_buffer.h
index de8eca1abaa7dcb41fd8533198005244288a71b3..f468c1dafef19723413ecf896384340fdc94796e 100644
(file)
--- a/
src/gromacs/mdtypes/threaded_force_buffer.h
+++ b/
src/gromacs/mdtypes/threaded_force_buffer.h
@@
-185,7
+185,7
@@
public:
//! Sets up the reduction, should be called after generating the masks on each thread
void setupReduction();
//! Sets up the reduction, should be called after generating the masks on each thread
void setupReduction();
- /*! Reduces forces and energies, as requested by \p stepWork
+ /*!
\brief
Reduces forces and energies, as requested by \p stepWork
*
* The reduction of all output starts at the output from thread \p reductionBeginIndex,
* except for the normal force buffer, which always starts at 0.
*
* The reduction of all output starts at the output from thread \p reductionBeginIndex,
* except for the normal force buffer, which always starts at 0.
diff --git
a/src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel.h
b/src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel.h
index bb256a8482cdb9bb4a56001aebd0d23016ec8ab5..03fc1b6157d38809d9660d00100bf230be5f51c8 100644
(file)
--- a/
src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel.h
+++ b/
src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel.h
@@
-53,7
+53,7
@@
namespace Nbnxm
{
using gmx::InteractionLocality;
{
using gmx::InteractionLocality;
-/*! Launch SYCL NBNXM kernel.
+/*!
\brief
Launch SYCL NBNXM kernel.
*
* \param nb Non-bonded parameters.
* \param stepWork Workload flags for the current step.
*
* \param nb Non-bonded parameters.
* \param stepWork Workload flags for the current step.
diff --git
a/src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel_pruneonly.h
b/src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel_pruneonly.h
index da2e96b99673d206594eaac478b1aee8fddd4c53..3508f5606bcb2ecd60068d017e0243ad65d5e052 100644
(file)
--- a/
src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel_pruneonly.h
+++ b/
src/gromacs/nbnxm/sycl/nbnxm_sycl_kernel_pruneonly.h
@@
-52,7
+52,7
@@
namespace Nbnxm
{
using gmx::InteractionLocality;
{
using gmx::InteractionLocality;
-/*! Launch SYCL NBNXM prune-only kernel.
+/*!
\brief
Launch SYCL NBNXM prune-only kernel.
*
* \param nb Non-bonded parameters.
* \param iloc Interaction locality.
*
* \param nb Non-bonded parameters.
* \param iloc Interaction locality.