BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Mark Abraham <Mark.J.Abraham@gmail.com>
	Sun, 23 Jan 2011 11:24:25 +0000 (22:24 +1100)
committer	Mark Abraham <Mark.J.Abraham@gmail.com>
	Sun, 23 Jan 2011 11:25:21 +0000 (22:25 +1100)
commit	e0cd15f3112678269eaf59514e8cc5c123db678a
tree	bdb08310a536e8b89604c07305df9707e2d15e60	tree \| snapshot
parent	74b066692202d387c131b90570877298e49e42a6	commit \| diff

Improved consistency of text style usage

All references to tool names, option names, and command line inputs
should be like '[TT]g_tool_name[tt]' or '<tt>-rerun</tt>' (depending
on the type of file), so that when it reaches the LaTeX manual, the
monospace font conveys the standard meaning, which is that this is
something the user might type.

IssueID #677

107 files changed:

share/html/online/mdp_opt.html		diff \| blob \| history
src/contrib/anaf.c		diff \| blob \| history
src/contrib/compnl.c		diff \| blob \| history
src/contrib/do_multiprot.c		diff \| blob \| history
src/contrib/do_shift.c		diff \| blob \| history
src/contrib/ehole.c		diff \| blob \| history
src/contrib/g_anavel.c		diff \| blob \| history
src/contrib/gen_table.c		diff \| blob \| history
src/contrib/gmx_sdf.c		diff \| blob \| history
src/contrib/hexamer.c		diff \| blob \| history
src/contrib/hrefify.c		diff \| blob \| history
src/contrib/mkice.c		diff \| blob \| history
src/contrib/optwat.c		diff \| blob \| history
src/contrib/pmetest.c		diff \| blob \| history
src/contrib/testlr.c		diff \| blob \| history
src/gmxlib/statutil.c		diff \| blob \| history
src/kernel/ffscan.c		diff \| blob \| history
src/kernel/g_protonate.c		diff \| blob \| history
src/kernel/g_x2top.c		diff \| blob \| history
src/kernel/gmxcheck.c		diff \| blob \| history
src/kernel/gmxdump.c		diff \| blob \| history
src/kernel/grompp.c		diff \| blob \| history
src/kernel/mdrun.c		diff \| blob \| history
src/kernel/pdb2gmx.c		diff \| blob \| history
src/kernel/readir.c		diff \| blob \| history
src/kernel/rtp2xml.c		diff \| blob \| history
src/kernel/tpbconv.c		diff \| blob \| history
src/ngmx/g_highway.c		diff \| blob \| history
src/ngmx/g_xrama.c		diff \| blob \| history
src/ngmx/ngmx.c		diff \| blob \| history
src/tools/do_dssp.c		diff \| blob \| history
src/tools/g_anadock.c		diff \| blob \| history
src/tools/gmx_anaeig.c		diff \| blob \| history
src/tools/gmx_analyze.c		diff \| blob \| history
src/tools/gmx_angle.c		diff \| blob \| history
src/tools/gmx_bar.c		diff \| blob \| history
src/tools/gmx_bond.c		diff \| blob \| history
src/tools/gmx_bundle.c		diff \| blob \| history
src/tools/gmx_chi.c		diff \| blob \| history
src/tools/gmx_cluster.c		diff \| blob \| history
src/tools/gmx_clustsize.c		diff \| blob \| history
src/tools/gmx_confrms.c		diff \| blob \| history
src/tools/gmx_covar.c		diff \| blob \| history
src/tools/gmx_densmap.c		diff \| blob \| history
src/tools/gmx_dielectric.c		diff \| blob \| history
src/tools/gmx_dih.c		diff \| blob \| history
src/tools/gmx_dipoles.c		diff \| blob \| history
src/tools/gmx_disre.c		diff \| blob \| history
src/tools/gmx_dist.c		diff \| blob \| history
src/tools/gmx_dyndom.c		diff \| blob \| history
src/tools/gmx_editconf.c		diff \| blob \| history
src/tools/gmx_eneconv.c		diff \| blob \| history
src/tools/gmx_enemat.c		diff \| blob \| history
src/tools/gmx_energy.c		diff \| blob \| history
src/tools/gmx_filter.c		diff \| blob \| history
src/tools/gmx_genbox.c		diff \| blob \| history
src/tools/gmx_genconf.c		diff \| blob \| history
src/tools/gmx_genion.c		diff \| blob \| history
src/tools/gmx_genpr.c		diff \| blob \| history
src/tools/gmx_gyrate.c		diff \| blob \| history
src/tools/gmx_hbond.c		diff \| blob \| history
src/tools/gmx_helix.c		diff \| blob \| history
src/tools/gmx_helixorient.c		diff \| blob \| history
src/tools/gmx_kinetics.c		diff \| blob \| history
src/tools/gmx_lie.c		diff \| blob \| history
src/tools/gmx_mdmat.c		diff \| blob \| history
src/tools/gmx_membed.c		diff \| blob \| history
src/tools/gmx_mindist.c		diff \| blob \| history
src/tools/gmx_morph.c		diff \| blob \| history
src/tools/gmx_msd.c		diff \| blob \| history
src/tools/gmx_nmeig.c		diff \| blob \| history
src/tools/gmx_nmens.c		diff \| blob \| history
src/tools/gmx_nmtraj.c		diff \| blob \| history
src/tools/gmx_order.c		diff \| blob \| history
src/tools/gmx_pme_error.c		diff \| blob \| history
src/tools/gmx_polystat.c		diff \| blob \| history
src/tools/gmx_principal.c		diff \| blob \| history
src/tools/gmx_rama.c		diff \| blob \| history
src/tools/gmx_rdf.c		diff \| blob \| history
src/tools/gmx_relax.c		diff \| blob \| history
src/tools/gmx_rms.c		diff \| blob \| history
src/tools/gmx_rmsdist.c		diff \| blob \| history
src/tools/gmx_rmsf.c		diff \| blob \| history
src/tools/gmx_rotacf.c		diff \| blob \| history
src/tools/gmx_rotmat.c		diff \| blob \| history
src/tools/gmx_saltbr.c		diff \| blob \| history
src/tools/gmx_sas.c		diff \| blob \| history
src/tools/gmx_select.c		diff \| blob \| history
src/tools/gmx_sham.c		diff \| blob \| history
src/tools/gmx_sorient.c		diff \| blob \| history
src/tools/gmx_spatial.c		diff \| blob \| history
src/tools/gmx_spol.c		diff \| blob \| history
src/tools/gmx_tcaf.c		diff \| blob \| history
src/tools/gmx_traj.c		diff \| blob \| history
src/tools/gmx_trjcat.c		diff \| blob \| history
src/tools/gmx_trjconv.c		diff \| blob \| history
src/tools/gmx_trjorder.c		diff \| blob \| history
src/tools/gmx_tune_pme.c		diff \| blob \| history
src/tools/gmx_vanhove.c		diff \| blob \| history
src/tools/gmx_velacc.c		diff \| blob \| history
src/tools/gmx_wham.c		diff \| blob \| history
src/tools/gmx_wheel.c		diff \| blob \| history
src/tools/gmx_xpm2ps.c		diff \| blob \| history
src/tools/make_edi.c		diff \| blob \| history
src/tools/make_ndx.c		diff \| blob \| history
src/tools/mk_angndx.c		diff \| blob \| history
src/tools/sas2mat.c		diff \| blob \| history

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