Fix #include style issues
authorTeemu Murtola <teemu.murtola@gmail.com>
Mon, 9 Dec 2013 19:32:35 +0000 (21:32 +0200)
committerGerrit Code Review <gerrit@gerrit.gromacs.org>
Sat, 4 Jan 2014 00:22:52 +0000 (01:22 +0100)
commit498c8a4f01b896e3f84facac557c07af1daf6819
tree659ad2d1803358bc3034c014e0f7555a9b02acb7
parent73f61104a29edb8493737655f78962714be46972
Fix #include style issues

Include local headers as "something.h" instead of <something.h>, and
vice versa for system headers.  These locations were found while working
on the includedeps.py script; it is easier to fix them than try to
selectively suppress things in the script.

All changes under linearalgebra are mechanical replacements of
  #include <types/simple.h>
with
  #include "types/simple.h"
Other files contain various fixes.  Removed includes for sysstuff.h,
since it doesn't serve a very useful purpose.

Deleted displacement.c and displacement.h instead of fixing, as they
have not been compiled in a long time.

Change-Id: I06e04c74707621903a1fa79de060e1989b99f042
114 files changed:
src/gromacs/gmxana/expfit.c
src/gromacs/gmxana/gmx_helixorient.c
src/gromacs/gmxlib/gmx_detect_hardware.c
src/gromacs/gmxlib/gmx_fatal.c
src/gromacs/gmxlib/gmx_random.c
src/gromacs/gmxlib/maths.c
src/gromacs/gmxlib/mvdata.c
src/gromacs/gmxlib/smalloc.c
src/gromacs/gmxlib/statistics/histogram.c
src/gromacs/gmxlib/thread_mpi/numa_malloc.c
src/gromacs/gmxlib/trajana/displacement.c [deleted file]
src/gromacs/gmxlib/warninp.c
src/gromacs/legacyheaders/displacement.h [deleted file]
src/gromacs/linearalgebra/gmx_blas/dgemm.c
src/gromacs/linearalgebra/gmx_blas/dgemv.c
src/gromacs/linearalgebra/gmx_blas/dger.c
src/gromacs/linearalgebra/gmx_blas/dnrm2.c
src/gromacs/linearalgebra/gmx_blas/dsymv.c
src/gromacs/linearalgebra/gmx_blas/dsyr2.c
src/gromacs/linearalgebra/gmx_blas/dsyr2k.c
src/gromacs/linearalgebra/gmx_blas/dtrmm.c
src/gromacs/linearalgebra/gmx_blas/dtrmv.c
src/gromacs/linearalgebra/gmx_blas/dtrsm.c
src/gromacs/linearalgebra/gmx_blas/sgemm.c
src/gromacs/linearalgebra/gmx_blas/sgemv.c
src/gromacs/linearalgebra/gmx_blas/sger.c
src/gromacs/linearalgebra/gmx_blas/snrm2.c
src/gromacs/linearalgebra/gmx_blas/ssymv.c
src/gromacs/linearalgebra/gmx_blas/ssyr2.c
src/gromacs/linearalgebra/gmx_blas/ssyr2k.c
src/gromacs/linearalgebra/gmx_blas/strmm.c
src/gromacs/linearalgebra/gmx_blas/strmv.c
src/gromacs/linearalgebra/gmx_blas/strsm.c
src/gromacs/linearalgebra/gmx_lapack/dbdsdc.c
src/gromacs/linearalgebra/gmx_lapack/dbdsqr.c
src/gromacs/linearalgebra/gmx_lapack/dgesdd.c
src/gromacs/linearalgebra/gmx_lapack/dgetf2.c
src/gromacs/linearalgebra/gmx_lapack/dlaed6.c
src/gromacs/linearalgebra/gmx_lapack/dlaev2.c
src/gromacs/linearalgebra/gmx_lapack/dlagtf.c
src/gromacs/linearalgebra/gmx_lapack/dlagts.c
src/gromacs/linearalgebra/gmx_lapack/dlapy2.c
src/gromacs/linearalgebra/gmx_lapack/dlar1vx.c
src/gromacs/linearalgebra/gmx_lapack/dlarf.c
src/gromacs/linearalgebra/gmx_lapack/dlarfg.c
src/gromacs/linearalgebra/gmx_lapack/dlarft.c
src/gromacs/linearalgebra/gmx_lapack/dlarrbx.c
src/gromacs/linearalgebra/gmx_lapack/dlarrex.c
src/gromacs/linearalgebra/gmx_lapack/dlarrfx.c
src/gromacs/linearalgebra/gmx_lapack/dlarrvx.c
src/gromacs/linearalgebra/gmx_lapack/dlartg.c
src/gromacs/linearalgebra/gmx_lapack/dlas2.c
src/gromacs/linearalgebra/gmx_lapack/dlascl.c
src/gromacs/linearalgebra/gmx_lapack/dlasd2.c
src/gromacs/linearalgebra/gmx_lapack/dlasd4.c
src/gromacs/linearalgebra/gmx_lapack/dlasd7.c
src/gromacs/linearalgebra/gmx_lapack/dlasq1.c
src/gromacs/linearalgebra/gmx_lapack/dlasq2.c
src/gromacs/linearalgebra/gmx_lapack/dlasq3.c
src/gromacs/linearalgebra/gmx_lapack/dlasq4.c
src/gromacs/linearalgebra/gmx_lapack/dlasq6.c
src/gromacs/linearalgebra/gmx_lapack/dlasr.c
src/gromacs/linearalgebra/gmx_lapack/dlassq.c
src/gromacs/linearalgebra/gmx_lapack/dlasv2.c
src/gromacs/linearalgebra/gmx_lapack/dorml2.c
src/gromacs/linearalgebra/gmx_lapack/dstebz.c
src/gromacs/linearalgebra/gmx_lapack/dstegr.c
src/gromacs/linearalgebra/gmx_lapack/dstein.c
src/gromacs/linearalgebra/gmx_lapack/dsteqr.c
src/gromacs/linearalgebra/gmx_lapack/dsterf.c
src/gromacs/linearalgebra/gmx_lapack/dsyevr.c
src/gromacs/linearalgebra/gmx_lapack/dsytd2.c
src/gromacs/linearalgebra/gmx_lapack/dtrtri.c
src/gromacs/linearalgebra/gmx_lapack/sbdsdc.c
src/gromacs/linearalgebra/gmx_lapack/sbdsqr.c
src/gromacs/linearalgebra/gmx_lapack/sgesdd.c
src/gromacs/linearalgebra/gmx_lapack/sgetf2.c
src/gromacs/linearalgebra/gmx_lapack/slaed6.c
src/gromacs/linearalgebra/gmx_lapack/slaev2.c
src/gromacs/linearalgebra/gmx_lapack/slagtf.c
src/gromacs/linearalgebra/gmx_lapack/slagts.c
src/gromacs/linearalgebra/gmx_lapack/slapy2.c
src/gromacs/linearalgebra/gmx_lapack/slar1vx.c
src/gromacs/linearalgebra/gmx_lapack/slarf.c
src/gromacs/linearalgebra/gmx_lapack/slarfg.c
src/gromacs/linearalgebra/gmx_lapack/slarft.c
src/gromacs/linearalgebra/gmx_lapack/slarrbx.c
src/gromacs/linearalgebra/gmx_lapack/slarrex.c
src/gromacs/linearalgebra/gmx_lapack/slarrfx.c
src/gromacs/linearalgebra/gmx_lapack/slarrvx.c
src/gromacs/linearalgebra/gmx_lapack/slartg.c
src/gromacs/linearalgebra/gmx_lapack/slas2.c
src/gromacs/linearalgebra/gmx_lapack/slascl.c
src/gromacs/linearalgebra/gmx_lapack/slasd2.c
src/gromacs/linearalgebra/gmx_lapack/slasd4.c
src/gromacs/linearalgebra/gmx_lapack/slasd7.c
src/gromacs/linearalgebra/gmx_lapack/slasq1.c
src/gromacs/linearalgebra/gmx_lapack/slasq2.c
src/gromacs/linearalgebra/gmx_lapack/slasq3.c
src/gromacs/linearalgebra/gmx_lapack/slasq4.c
src/gromacs/linearalgebra/gmx_lapack/slasq6.c
src/gromacs/linearalgebra/gmx_lapack/slasr.c
src/gromacs/linearalgebra/gmx_lapack/slassq.c
src/gromacs/linearalgebra/gmx_lapack/slasv2.c
src/gromacs/linearalgebra/gmx_lapack/sorml2.c
src/gromacs/linearalgebra/gmx_lapack/sstebz.c
src/gromacs/linearalgebra/gmx_lapack/sstegr.c
src/gromacs/linearalgebra/gmx_lapack/sstein.c
src/gromacs/linearalgebra/gmx_lapack/ssteqr.c
src/gromacs/linearalgebra/gmx_lapack/ssterf.c
src/gromacs/linearalgebra/gmx_lapack/ssyevr.c
src/gromacs/linearalgebra/gmx_lapack/ssytd2.c
src/gromacs/linearalgebra/gmx_lapack/strtri.c
src/gromacs/mdlib/mvxvf.c