BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Roland Schulz <roland.schulz@intel.com>
	Wed, 27 Dec 2017 18:59:04 +0000 (10:59 -0800)
committer	Erik Lindahl <erik.lindahl@gmail.com>
	Thu, 28 Dec 2017 22:24:52 +0000 (23:24 +0100)
commit	43a0002e84ecbf060dc87559891cf9e70b69cb0e
tree	7843dba5ca9a0ca6b93ae4f33bc18aaa7355ccc2	tree \| snapshot
parent	6fb84c92444404e8d9e403e044111989e0cf7613	commit \| diff

Replace GMX_ALIGNED with alignas and SIMD alignment define

This allows each platform to define its required or
preferred SIMD alignment, and we avoid using alignments
larger than what might be supported on each architecture.
Also fix overalignment in pairs.

Fixes #2365

Change-Id: I4793adf31d186eade8a1fd8c920ab75c685ad53f

55 files changed:

src/gromacs/ewald/pme-gather.cpp		diff \| blob \| history
src/gromacs/ewald/pme-spline-work.cpp		diff \| blob \| history
src/gromacs/ewald/pme-spread.cpp		diff \| blob \| history
src/gromacs/listed-forces/bonded.cpp		diff \| blob \| history
src/gromacs/listed-forces/pairs.cpp		diff \| blob \| history
src/gromacs/mdlib/clincs.cpp		diff \| blob \| history
src/gromacs/mdlib/csettle.cpp		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_inner.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_outer.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_inner.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_outer.h		diff \| blob \| history
src/gromacs/simd/impl_arm_neon/impl_arm_neon_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_arm_neon/impl_arm_neon_util_float.h		diff \| blob \| history
src/gromacs/simd/impl_arm_neon_asimd/impl_arm_neon_asimd_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_arm_neon_asimd/impl_arm_neon_asimd_util_double.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_qpx/impl_ibm_qpx_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_qpx/impl_ibm_qpx_simd_double.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_qpx/impl_ibm_qpx_simd_float.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_qpx/impl_ibm_qpx_util_double.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_qpx/impl_ibm_qpx_util_float.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_vmx/impl_ibm_vmx_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_vmx/impl_ibm_vmx_util_float.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_vsx/impl_ibm_vsx_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_vsx/impl_ibm_vsx_util_double.h		diff \| blob \| history
src/gromacs/simd/impl_ibm_vsx/impl_ibm_vsx_util_float.h		diff \| blob \| history
src/gromacs/simd/impl_none/impl_none.h		diff \| blob \| history
src/gromacs/simd/impl_reference/impl_reference_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx2_128/impl_x86_avx2_128_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx2_256/impl_x86_avx2_256_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx_128_fma/impl_x86_avx_128_fma_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx_256/impl_x86_avx_256_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx_256/impl_x86_avx_256_util_double.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx_256/impl_x86_avx_256_util_float.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx_512/impl_x86_avx_512_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx_512/impl_x86_avx_512_util_double.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx_512/impl_x86_avx_512_util_float.h		diff \| blob \| history
src/gromacs/simd/impl_x86_avx_512_knl/impl_x86_avx_512_knl_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_x86_mic/impl_x86_mic_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_x86_mic/impl_x86_mic_util_double.h		diff \| blob \| history
src/gromacs/simd/impl_x86_mic/impl_x86_mic_util_float.h		diff \| blob \| history
src/gromacs/simd/impl_x86_sse2/impl_x86_sse2_definitions.h		diff \| blob \| history
src/gromacs/simd/impl_x86_sse2/impl_x86_sse2_util_float.h		diff \| blob \| history
src/gromacs/simd/impl_x86_sse4_1/impl_x86_sse4_1_definitions.h		diff \| blob \| history
src/gromacs/simd/simd_math.h		diff \| blob \| history
src/gromacs/simd/tests/bootstrap_loadstore.cpp		diff \| blob \| history
src/gromacs/simd/tests/simd.cpp		diff \| blob \| history
src/gromacs/simd/tests/simd.h		diff \| blob \| history
src/gromacs/simd/tests/simd4.cpp		diff \| blob \| history
src/gromacs/simd/tests/simd4_floatingpoint.cpp		diff \| blob \| history
src/gromacs/simd/tests/simd_floatingpoint.cpp		diff \| blob \| history
src/gromacs/simd/tests/simd_integer.cpp		diff \| blob \| history
src/gromacs/tables/tests/splinetable.cpp		diff \| blob \| history
src/gromacs/utility/basedefinitions.h		diff \| blob \| history
src/gromacs/utility/tests/CMakeLists.txt		diff \| blob \| history
src/gromacs/utility/tests/basedefinitions.cpp	[deleted file]	blob \| history

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