Initialize default index groups for C++ tools
authorTeemu Murtola <teemu.murtola@gmail.com>
Wed, 25 Dec 2013 18:47:56 +0000 (20:47 +0200)
committerGerrit Code Review <gerrit@gerrit.gromacs.org>
Mon, 30 Dec 2013 14:29:27 +0000 (15:29 +0100)
commit30ceea84df4fd1e067a95303342285a1c43c2b51
tree3762c8030ef12c83c9bfe788cd6f83ec07ed13e4
parent15976de143b90ee7100ba630e8111cc4724f443f
Initialize default index groups for C++ tools

If an index file is not explicitly provided, initialize default
index groups using the old analyse() method for the new C++ tools.
This is better than nothing, and keeps the default groups in sync.

Also some clean-up for related code in
TrajectoryAnalysisCommandLineRunner.

Temporary fix for #921.

Change-Id: I4f9d2586a0446302ce0a2d9326d2fd4c85b02ef0
src/gromacs/trajectoryanalysis/cmdlinerunner.cpp
src/gromacs/trajectoryanalysis/cmdlinerunner.h
src/gromacs/trajectoryanalysis/runnercommon.cpp
src/gromacs/trajectoryanalysis/runnercommon.h
src/gromacs/trajectoryanalysis/tests/moduletest.cpp