BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Teemu Murtola <teemu.murtola@gmail.com>
	Sat, 23 Nov 2013 05:22:20 +0000 (07:22 +0200)
committer	Gerrit Code Review <gerrit@gerrit.gromacs.org>
	Fri, 29 Nov 2013 07:23:38 +0000 (08:23 +0100)
commit	260a3b44e5db4b782fbc166f5362487c9c6f54df
tree	52e093c9157208f2dd267b22994b85432f7e36f9	tree \| snapshot
parent	9e6f6ca4e667a9c90f2655113889fb66bddcc7fa	commit \| diff

Make help texts refer to gmx-something

Help text written by -h, as well as man pages and the HTML help now
refer to programs as gmx-something instead of the old names that are now
only symbolic links. Cross-references in the HTML pages should be there
again.

Related to #685.

Change-Id: I41ce99cc224aa2c13f94d61e625115a8c991daba

94 files changed:

src/gromacs/gmxana/gmx_anadock.c		diff \| blob \| history
src/gromacs/gmxana/gmx_anaeig.c		diff \| blob \| history
src/gromacs/gmxana/gmx_analyze.c		diff \| blob \| history
src/gromacs/gmxana/gmx_angle.c		diff \| blob \| history
src/gromacs/gmxana/gmx_bar.c		diff \| blob \| history
src/gromacs/gmxana/gmx_bundle.c		diff \| blob \| history
src/gromacs/gmxana/gmx_chi.c		diff \| blob \| history
src/gromacs/gmxana/gmx_cluster.c		diff \| blob \| history
src/gromacs/gmxana/gmx_clustsize.c		diff \| blob \| history
src/gromacs/gmxana/gmx_confrms.c		diff \| blob \| history
src/gromacs/gmxana/gmx_covar.c		diff \| blob \| history
src/gromacs/gmxana/gmx_current.c		diff \| blob \| history
src/gromacs/gmxana/gmx_density.c		diff \| blob \| history
src/gromacs/gmxana/gmx_densmap.c		diff \| blob \| history
src/gromacs/gmxana/gmx_densorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dielectric.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dipoles.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_disre.c		diff \| blob \| history
src/gromacs/gmxana/gmx_do_dssp.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dos.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dyecoupl.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dyndom.c		diff \| blob \| history
src/gromacs/gmxana/gmx_editconf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_eneconv.c		diff \| blob \| history
src/gromacs/gmxana/gmx_enemat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_energy.c		diff \| blob \| history
src/gromacs/gmxana/gmx_filter.c		diff \| blob \| history
src/gromacs/gmxana/gmx_genbox.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_genconf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_genion.c		diff \| blob \| history
src/gromacs/gmxana/gmx_genpr.c		diff \| blob \| history
src/gromacs/gmxana/gmx_gyrate.c		diff \| blob \| history
src/gromacs/gmxana/gmx_h2order.c		diff \| blob \| history
src/gromacs/gmxana/gmx_hbond.c		diff \| blob \| history
src/gromacs/gmxana/gmx_helix.c		diff \| blob \| history
src/gromacs/gmxana/gmx_helixorient.c		diff \| blob \| history
src/gromacs/gmxana/gmx_hydorder.c		diff \| blob \| history
src/gromacs/gmxana/gmx_kinetics.c		diff \| blob \| history
src/gromacs/gmxana/gmx_lie.c		diff \| blob \| history
src/gromacs/gmxana/gmx_make_edi.c		diff \| blob \| history
src/gromacs/gmxana/gmx_make_ndx.c		diff \| blob \| history
src/gromacs/gmxana/gmx_mdmat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_mk_angndx.c		diff \| blob \| history
src/gromacs/gmxana/gmx_morph.c		diff \| blob \| history
src/gromacs/gmxana/gmx_msd.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmeig.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmens.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmtraj.c		diff \| blob \| history
src/gromacs/gmxana/gmx_order.c		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_polystat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_potential.c		diff \| blob \| history
src/gromacs/gmxana/gmx_principal.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rama.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rdf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rms.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rmsdist.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rmsf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rotacf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rotmat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_saltbr.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sans.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sas.c		diff \| blob \| history
src/gromacs/gmxana/gmx_saxs.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sham.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sigeps.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sorient.c		diff \| blob \| history
src/gromacs/gmxana/gmx_spatial.c		diff \| blob \| history
src/gromacs/gmxana/gmx_spol.c		diff \| blob \| history
src/gromacs/gmxana/gmx_tcaf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_traj.c		diff \| blob \| history
src/gromacs/gmxana/gmx_trjcat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_trjconv.c		diff \| blob \| history
src/gromacs/gmxana/gmx_trjorder.c		diff \| blob \| history
src/gromacs/gmxana/gmx_tune_pme.c		diff \| blob \| history
src/gromacs/gmxana/gmx_vanhove.c		diff \| blob \| history
src/gromacs/gmxana/gmx_velacc.c		diff \| blob \| history
src/gromacs/gmxana/gmx_wham.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_wheel.c		diff \| blob \| history
src/gromacs/gmxana/gmx_xpm2ps.c		diff \| blob \| history
src/gromacs/selection/selhelp.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/angle.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/distance.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/freevolume.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/select.cpp		diff \| blob \| history
src/programs/gmx/g_protonate.c		diff \| blob \| history
src/programs/gmx/g_x2top.c		diff \| blob \| history
src/programs/gmx/gmxcheck.c		diff \| blob \| history
src/programs/gmx/gmxdump.c		diff \| blob \| history
src/programs/gmx/grompp.c		diff \| blob \| history
src/programs/gmx/pdb2gmx.c		diff \| blob \| history
src/programs/gmx/tpbconv.c		diff \| blob \| history
src/programs/mdrun/mdrun.cpp		diff \| blob \| history
src/programs/view/view.cpp		diff \| blob \| history

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