BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	lindahl <lindahl>
	Tue, 20 Jan 2009 13:46:22 +0000 (13:46 +0000)
committer	lindahl <lindahl>
	Tue, 20 Jan 2009 13:46:22 +0000 (13:46 +0000)
commit	1437fac0d1bf899e222ab149d1ad0fefb6240cf1
tree	92e4b0586e6a4711772461835b62e7530c51ab2d	tree \| snapshot
parent	494980e8648f87ff6e7fc0ec3f17659a7c7e816f	commit \| diff

Merged changes from 4.0.3 release into HEAD.

232 files changed:

acinclude.m4		diff \| blob \| history
admin/Makefile.am		diff \| blob \| history
admin/Makefile.in		diff \| blob \| history
admin/gromacs.spec		diff \| blob \| history
config/config.guess		diff \| blob \| history
config/config.sub		diff \| blob \| history
config/depcomp		diff \| blob \| history
configure.ac		diff \| blob \| history
include/gmx_arpack.h		diff \| blob \| history
include/gmx_blas.h		diff \| blob \| history
include/gmx_cyclecounter.h		diff \| blob \| history
include/gmx_random.h		diff \| blob \| history
include/gmx_wallcycle.h		diff \| blob \| history
include/mpelogging.h		diff \| blob \| history
include/vec.h		diff \| blob \| history
scripts/completion.bash		diff \| blob \| history
scripts/completion.csh		diff \| blob \| history
scripts/completion.zsh		diff \| blob \| history
share/html/online.html		diff \| blob \| history
share/html/online/cpt.html		diff \| blob \| history
share/html/online/dat.html		diff \| blob \| history
share/html/online/dlg.html		diff \| blob \| history
share/html/online/do_dssp.html		diff \| blob \| history
share/html/online/edi.html		diff \| blob \| history
share/html/online/editconf.html		diff \| blob \| history
share/html/online/edo.html		diff \| blob \| history
share/html/online/edr.html		diff \| blob \| history
share/html/online/ene.html		diff \| blob \| history
share/html/online/eneconv.html		diff \| blob \| history
share/html/online/eps.html		diff \| blob \| history
share/html/online/files.html		diff \| blob \| history
share/html/online/flow.html		diff \| blob \| history
share/html/online/g87.html		diff \| blob \| history
share/html/online/g96.html		diff \| blob \| history
share/html/online/g_anaeig.html		diff \| blob \| history
share/html/online/g_analyze.html		diff \| blob \| history
share/html/online/g_angle.html		diff \| blob \| history
share/html/online/g_bond.html		diff \| blob \| history
share/html/online/g_bundle.html		diff \| blob \| history
share/html/online/g_chi.html		diff \| blob \| history
share/html/online/g_cluster.html		diff \| blob \| history
share/html/online/g_confrms.html		diff \| blob \| history
share/html/online/g_covar.html		diff \| blob \| history
share/html/online/g_density.html		diff \| blob \| history
share/html/online/g_densmap.html		diff \| blob \| history
share/html/online/g_dielectric.html		diff \| blob \| history
share/html/online/g_dih.html		diff \| blob \| history
share/html/online/g_dipoles.html		diff \| blob \| history
share/html/online/g_disre.html		diff \| blob \| history
share/html/online/g_dist.html		diff \| blob \| history
share/html/online/g_dyndom.html		diff \| blob \| history
share/html/online/g_enemat.html		diff \| blob \| history
share/html/online/g_energy.html		diff \| blob \| history
share/html/online/g_gyrate.html		diff \| blob \| history
share/html/online/g_h2order.html		diff \| blob \| history
share/html/online/g_hbond.html		diff \| blob \| history
share/html/online/g_helix.html		diff \| blob \| history
share/html/online/g_lie.html		diff \| blob \| history
share/html/online/g_mdmat.html		diff \| blob \| history
share/html/online/g_mindist.html		diff \| blob \| history
share/html/online/g_morph.html		diff \| blob \| history
share/html/online/g_msd.html		diff \| blob \| history
share/html/online/g_nmeig.html		diff \| blob \| history
share/html/online/g_nmens.html		diff \| blob \| history
share/html/online/g_nmtraj.html		diff \| blob \| history
share/html/online/g_order.html		diff \| blob \| history
share/html/online/g_potential.html		diff \| blob \| history
share/html/online/g_rama.html		diff \| blob \| history
share/html/online/g_rdf.html		diff \| blob \| history
share/html/online/g_rms.html		diff \| blob \| history
share/html/online/g_rmsdist.html		diff \| blob \| history
share/html/online/g_rmsf.html		diff \| blob \| history
share/html/online/g_rotacf.html		diff \| blob \| history
share/html/online/g_saltbr.html		diff \| blob \| history
share/html/online/g_sas.html		diff \| blob \| history
share/html/online/g_sgangle.html		diff \| blob \| history
share/html/online/g_sham.html		diff \| blob \| history
share/html/online/g_sorient.html		diff \| blob \| history
share/html/online/g_tcaf.html		diff \| blob \| history
share/html/online/g_traj.html		diff \| blob \| history
share/html/online/g_velacc.html		diff \| blob \| history
share/html/online/genbox.html		diff \| blob \| history
share/html/online/genconf.html		diff \| blob \| history
share/html/online/genion.html		diff \| blob \| history
share/html/online/genpr.html		diff \| blob \| history
share/html/online/getting_started.html		diff \| blob \| history
share/html/online/gmxcheck.html		diff \| blob \| history
share/html/online/gmxdemo.html		diff \| blob \| history
share/html/online/gmxdump.html		diff \| blob \| history
share/html/online/gro.html		diff \| blob \| history
share/html/online/grompp.html		diff \| blob \| history
share/html/online/hat.html		diff \| blob \| history
share/html/online/highway.html		diff \| blob \| history
share/html/online/itp.html		diff \| blob \| history
share/html/online/log.html		diff \| blob \| history
share/html/online/m2p.html		diff \| blob \| history
share/html/online/make_edi.html		diff \| blob \| history
share/html/online/make_ndx.html		diff \| blob \| history
share/html/online/map.html		diff \| blob \| history
share/html/online/mdp.html		diff \| blob \| history
share/html/online/mdp_opt.html		diff \| blob \| history
share/html/online/mdrun.html		diff \| blob \| history
share/html/online/methanol.html		diff \| blob \| history
share/html/online/mixed.html		diff \| blob \| history
share/html/online/mk_angndx.html		diff \| blob \| history
share/html/online/mtx.html		diff \| blob \| history
share/html/online/ndx.html		diff \| blob \| history
share/html/online/ngmx.html		diff \| blob \| history
share/html/online/out.html		diff \| blob \| history
share/html/online/pdb.html		diff \| blob \| history
share/html/online/pdb2gmx.html		diff \| blob \| history
share/html/online/protonate.html		diff \| blob \| history
share/html/online/protunf.html		diff \| blob \| history
share/html/online/rtp.html		diff \| blob \| history
share/html/online/speptide.html		diff \| blob \| history
share/html/online/tex.html		diff \| blob \| history
share/html/online/top.html		diff \| blob \| history
share/html/online/tpa.html		diff \| blob \| history
share/html/online/tpb.html		diff \| blob \| history
share/html/online/tpbconv.html		diff \| blob \| history
share/html/online/tpr.html		diff \| blob \| history
share/html/online/trj.html		diff \| blob \| history
share/html/online/trjcat.html		diff \| blob \| history
share/html/online/trjconv.html		diff \| blob \| history
share/html/online/trjorder.html		diff \| blob \| history
share/html/online/trr.html		diff \| blob \| history
share/html/online/water.html		diff \| blob \| history
share/html/online/wheel.html		diff \| blob \| history
share/html/online/x2top.html		diff \| blob \| history
share/html/online/xpm.html		diff \| blob \| history
share/html/online/xpm2ps.html		diff \| blob \| history
share/html/online/xrama.html		diff \| blob \| history
share/html/online/xtc.html		diff \| blob \| history
share/html/online/xvg.html		diff \| blob \| history
share/html/online/yourown.html		diff \| blob \| history
share/top/FF.dat		diff \| blob \| history
share/top/aminoacids.dat		diff \| blob \| history
share/top/ffcharmm27-c.tdb	[new file with mode: 0644]	blob
share/top/ffcharmm27-n.tdb	[new file with mode: 0644]	blob
share/top/ffcharmm27.atp	[new file with mode: 0644]	blob
share/top/ffcharmm27.ddb	[new file with mode: 0644]	blob
share/top/ffcharmm27.hdb	[new file with mode: 0644]	blob
share/top/ffcharmm27.itp	[new file with mode: 0644]	blob
share/top/ffcharmm27.rtp	[new file with mode: 0644]	blob
share/top/ffcharmm27bon.itp	[new file with mode: 0644]	blob
share/top/ffcharmm27nb.itp	[new file with mode: 0644]	blob
share/top/spc.itp		diff \| blob \| history
share/top/tip3p.itp		diff \| blob \| history
share/top/tip4p.itp		diff \| blob \| history
src/Makefile.in		diff \| blob \| history
src/gmxlib/Makefile.in		diff \| blob \| history
src/gmxlib/checkpoint.c		diff \| blob \| history
src/gmxlib/enxio.c		diff \| blob \| history
src/gmxlib/futil.c		diff \| blob \| history
src/gmxlib/gmx_random.c		diff \| blob \| history
src/gmxlib/gmxfio.c		diff \| blob \| history
src/gmxlib/index.c		diff \| blob \| history
src/gmxlib/libxdrf.c		diff \| blob \| history
src/gmxlib/mtop_util.c		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel/mknb_metacode.h		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile.am		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_bluegene/interaction.h		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_bluegene/nb_kernel300_bluegene.h		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_bluegene/nb_kernel312_bluegene.h		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_bluegene/nb_kernel_bluegene.h		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_bluegene/nb_kernel_gen_bluegene.h		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_bluegene/nb_kernel_w3_bluegene.h		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_bluegene/nb_kernel_w4_bluegene.h		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_bluegene/nb_kernel_w4w4_bluegene.h		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_ia64_double/nb_kernel_ia64_double.c		diff \| blob \| history
src/gmxlib/nonbonded/nb_kernel_ia64_single/nb_kernel_ia64_single.c		diff \| blob \| history
src/gmxlib/statutil.c		diff \| blob \| history
src/gmxlib/strdb.c		diff \| blob \| history
src/gmxlib/topsort.c		diff \| blob \| history
src/gmxlib/trnio.c		diff \| blob \| history
src/gmxlib/trxio.c		diff \| blob \| history
src/gmxlib/viewit.c		diff \| blob \| history
src/gmxlib/wman.c		diff \| blob \| history
src/kernel/gen_ad.c		diff \| blob \| history
src/kernel/genalg.c		diff \| blob \| history
src/kernel/gmxcpp.c		diff \| blob \| history
src/kernel/gmxcpp.h		diff \| blob \| history
src/kernel/grompp.c		diff \| blob \| history
src/kernel/h_db.c		diff \| blob \| history
src/kernel/pdb2gmx.c		diff \| blob \| history
src/kernel/pdb2top.c		diff \| blob \| history
src/kernel/readir.c		diff \| blob \| history
src/kernel/resall.c		diff \| blob \| history
src/kernel/ter_db.c		diff \| blob \| history
src/kernel/topdirs.c		diff \| blob \| history
src/kernel/toppush.c		diff \| blob \| history
src/kernel/toputil.h	[deleted file]	blob \| history
src/mdlib/Makefile.am		diff \| blob \| history
src/mdlib/calcmu.c		diff \| blob \| history
src/mdlib/clincs.c		diff \| blob \| history
src/mdlib/constr.c		diff \| blob \| history
src/mdlib/ghat.c		diff \| blob \| history
src/mdlib/gmx_parallel_3dfft.c		diff \| blob \| history
src/mdlib/gmx_wallcycle.c		diff \| blob \| history
src/mdlib/mdebin.c		diff \| blob \| history
src/mdlib/pme.c		diff \| blob \| history
src/mdlib/qm_gaussian.c		diff \| blob \| history
src/mdlib/qm_mopac.c		diff \| blob \| history
src/mdlib/stat.c		diff \| blob \| history
src/mdlib/wall.c		diff \| blob \| history
src/ngmx/dialogs.c		diff \| blob \| history
src/ngmx/fgrid.c		diff \| blob \| history
src/ngmx/ngmx.c		diff \| blob \| history
src/tools/correl.h		diff \| blob \| history
src/tools/do_dssp.c		diff \| blob \| history
src/tools/gmx_anaeig.c		diff \| blob \| history
src/tools/gmx_chi.c		diff \| blob \| history
src/tools/gmx_cluster.c		diff \| blob \| history
src/tools/gmx_covar.c		diff \| blob \| history
src/tools/gmx_density.c		diff \| blob \| history
src/tools/gmx_eneconv.c		diff \| blob \| history
src/tools/gmx_energy.c		diff \| blob \| history
src/tools/gmx_nmens.c		diff \| blob \| history
src/tools/gmx_nmtraj.c		diff \| blob \| history
src/tools/gmx_rms.c		diff \| blob \| history
src/tools/gmx_sas.c		diff \| blob \| history
src/tools/gmx_sdf.c		diff \| blob \| history
src/tools/gmx_trjcat.c		diff \| blob \| history
src/tools/gmx_trjconv.c		diff \| blob \| history
src/tools/gmx_wham.c		diff \| blob \| history
src/tools/gmx_xpm2ps.c		diff \| blob \| history
src/tools/make_ndx.c		diff \| blob \| history
src/tools/nsc.c		diff \| blob \| history
src/tools/pp2shift.c		diff \| blob \| history

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