BioD PNPI Git Repos - alexxy/gromacs.git/commit - src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Teemu Murtola <teemu.murtola@gmail.com>
	Mon, 14 Dec 2015 19:02:10 +0000 (21:02 +0200)
committer	Mark Abraham <mark.j.abraham@gmail.com>
	Tue, 15 Dec 2015 09:18:02 +0000 (10:18 +0100)
commit	01bc43bc6fb5e51016d1fe2a8e5a99a0ee6390e7
tree	b8a4bee59fe529caf6800170125c3866f328d452	tree \| snapshot
parent	23084d4d1a265f7951a55f1d4af34b71e05424a6	commit \| diff

Move main.*, splitter.*, gmx_omp_nthreads.* to mdlib

Remove unused #includes for these headers, and remove some incorrect
uses, which showed that they are not actually used outside mdrun.
listed-forces -> mdlib dependency becomes slightly stronger with this,
but internal structure of mdrun code anyways needs a lot of work to
remove the dependency cycles.

Change-Id: If326c8da5a732ee725aa16ffad0ec72f9fefb371

43 files changed:

src/gromacs/domdec/domdec.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_constraints.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_specatomcomm.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_topology.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_vsite.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_disre.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/grompp.cpp		diff \| blob \| history
src/gromacs/listed-forces/disre.cpp		diff \| blob \| history
src/gromacs/listed-forces/manage-threading.cpp		diff \| blob \| history
src/gromacs/listed-forces/orires.cpp		diff \| blob \| history
src/gromacs/mdlib/broadcaststructs.cpp		diff \| blob \| history
src/gromacs/mdlib/calcmu.cpp		diff \| blob \| history
src/gromacs/mdlib/clincs.cpp		diff \| blob \| history
src/gromacs/mdlib/constr.cpp		diff \| blob \| history
src/gromacs/mdlib/coupling.cpp		diff \| blob \| history
src/gromacs/mdlib/force.cpp		diff \| blob \| history
src/gromacs/mdlib/forcerec.cpp		diff \| blob \| history
src/gromacs/mdlib/gmx_omp_nthreads.cpp	[moved from src/gromacs/gmxlib/gmx_omp_nthreads.cpp with 100% similarity]	blob \| history
src/gromacs/mdlib/gmx_omp_nthreads.h	[moved from src/gromacs/gmxlib/gmx_omp_nthreads.h with 100% similarity]	blob \| history
src/gromacs/mdlib/main.cpp	[moved from src/gromacs/gmxlib/main.cpp with 100% similarity]	blob \| history
src/gromacs/mdlib/main.h	[moved from src/gromacs/gmxlib/main.h with 98% similarity]	diff \| blob \| history
src/gromacs/mdlib/mdatoms.cpp		diff \| blob \| history
src/gromacs/mdlib/minimize.cpp		diff \| blob \| history
src/gromacs/mdlib/nbnxn_atomdata.cpp		diff \| blob \| history
src/gromacs/mdlib/nbnxn_grid.cpp		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_file_generator/nbnxn_kernel_simd_template.cpp.pre		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.cpp		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn.cpp		diff \| blob \| history
src/gromacs/mdlib/nbnxn_search.cpp		diff \| blob \| history
src/gromacs/mdlib/sim_util.cpp		diff \| blob \| history
src/gromacs/mdlib/splitter.cpp	[moved from src/gromacs/gmxlib/splitter.cpp with 100% similarity]	blob \| history
src/gromacs/mdlib/splitter.h	[moved from src/gromacs/gmxlib/splitter.h with 97% similarity]	diff \| blob \| history
src/gromacs/mdlib/tgroup.cpp		diff \| blob \| history
src/gromacs/mdlib/update.cpp		diff \| blob \| history
src/gromacs/mdlib/vsite.cpp		diff \| blob \| history
src/gromacs/mdrunutility/handlerestart.cpp		diff \| blob \| history
src/gromacs/mdrunutility/threadaffinity.cpp		diff \| blob \| history
src/programs/mdrun/mdrun.cpp		diff \| blob \| history
src/programs/mdrun/repl_ex.cpp		diff \| blob \| history
src/programs/mdrun/resource-division.cpp		diff \| blob \| history
src/programs/mdrun/runner.cpp		diff \| blob \| history

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