BioD PNPI Git Repos - alexxy/gromacs.git/commit - src/gromacs/gmxlib/orires.cpp

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Teemu Murtola <teemu.murtola@gmail.com>
	Sat, 14 Nov 2015 04:53:09 +0000 (06:53 +0200)
committer	Gerrit Code Review <gerrit@gerrit.gromacs.org>
	Sat, 14 Nov 2015 11:53:27 +0000 (12:53 +0100)
commit	5482f70895868c02200f5ae5ebc524e5f631af75
tree	5e628c5cd3d49d8e036d3f6d44a571c8acbfa80a	tree \| snapshot
parent	9112ae6c49e3486a57a6641b018f83b521ec89ec	commit \| diff

Move network.h to gmxlib/

- Suppress cyclic dependency caused by too high-level code that is
  currently present in checkpoint.cpp.
- Remove unused network.h use from forcetable.cpp to avoid another
  cyclic dependency.
- Remove all includes for network.h from other headers, and introduce
  them where required.
- Remove broken debug_gmx().
- Some cleanup.

Change-Id: Ib80787c4c2f16b12cc0f152f1017ea44dd69ecf4

68 files changed:

docs/doxygen/cycle-suppressions.txt		diff \| blob \| history
src/gromacs/domdec/domdec.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_box.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_setup.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_topology.cpp		diff \| blob \| history
src/gromacs/essentialdynamics/edsam.cpp		diff \| blob \| history
src/gromacs/ewald/pme-internal.h		diff \| blob \| history
src/gromacs/ewald/pme-load-balancing.cpp		diff \| blob \| history
src/gromacs/ewald/pme-only.cpp		diff \| blob \| history
src/gromacs/ewald/pme-pp.cpp		diff \| blob \| history
src/gromacs/ewald/pme.cpp		diff \| blob \| history
src/gromacs/fileio/checkpoint.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxlib/disre.cpp		diff \| blob \| history
src/gromacs/gmxlib/gmx_detect_hardware.cpp		diff \| blob \| history
src/gromacs/gmxlib/gmx_omp_nthreads.cpp		diff \| blob \| history
src/gromacs/gmxlib/main.cpp		diff \| blob \| history
src/gromacs/gmxlib/network.cpp		diff \| blob \| history
src/gromacs/gmxlib/network.h	[moved from src/gromacs/legacyheaders/network.h with 91% similarity]	diff \| blob \| history
src/gromacs/gmxlib/orires.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/genhydro.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/readir.cpp		diff \| blob \| history
src/gromacs/imd/imd.cpp		diff \| blob \| history
src/gromacs/listed-forces/listed-forces.cpp		diff \| blob \| history
src/gromacs/mdlib/broadcaststructs.cpp		diff \| blob \| history
src/gromacs/mdlib/calcmu.cpp		diff \| blob \| history
src/gromacs/mdlib/expanded.cpp		diff \| blob \| history
src/gromacs/mdlib/force.cpp		diff \| blob \| history
src/gromacs/mdlib/forcerec.cpp		diff \| blob \| history
src/gromacs/mdlib/forcerec.h		diff \| blob \| history
src/gromacs/mdlib/genborn.cpp		diff \| blob \| history
src/gromacs/mdlib/genborn_allvsall.cpp		diff \| blob \| history
src/gromacs/mdlib/groupcoord.cpp		diff \| blob \| history
src/gromacs/mdlib/md_support.cpp		diff \| blob \| history
src/gromacs/mdlib/md_support.h		diff \| blob \| history
src/gromacs/mdlib/mdebin.cpp		diff \| blob \| history
src/gromacs/mdlib/mdoutf.h		diff \| blob \| history
src/gromacs/mdlib/mdrun_signalling.cpp		diff \| blob \| history
src/gromacs/mdlib/minimize.cpp		diff \| blob \| history
src/gromacs/mdlib/ns.cpp		diff \| blob \| history
src/gromacs/mdlib/nsgrid.cpp		diff \| blob \| history
src/gromacs/mdlib/qm_gamess.cpp		diff \| blob \| history
src/gromacs/mdlib/qm_gaussian.cpp		diff \| blob \| history
src/gromacs/mdlib/qm_mopac.cpp		diff \| blob \| history
src/gromacs/mdlib/qm_orca.cpp		diff \| blob \| history
src/gromacs/mdlib/qmmm.cpp		diff \| blob \| history
src/gromacs/mdlib/qmmm.h		diff \| blob \| history
src/gromacs/mdlib/rbin.cpp		diff \| blob \| history
src/gromacs/mdlib/shellfc.cpp		diff \| blob \| history
src/gromacs/mdlib/sim_util.cpp		diff \| blob \| history
src/gromacs/mdlib/stat.cpp		diff \| blob \| history
src/gromacs/mdlib/tgroup.cpp		diff \| blob \| history
src/gromacs/mdlib/tpi.cpp		diff \| blob \| history
src/gromacs/mdlib/trajectory_writing.cpp		diff \| blob \| history
src/gromacs/mdlib/update.cpp		diff \| blob \| history
src/gromacs/mdlib/vcm.cpp		diff \| blob \| history
src/gromacs/mdlib/vsite.cpp		diff \| blob \| history
src/gromacs/mdrunutility/handlerestart.cpp		diff \| blob \| history
src/gromacs/pulling/pull.cpp		diff \| blob \| history
src/gromacs/pulling/pull_rotation.cpp		diff \| blob \| history
src/gromacs/pulling/pullutil.cpp		diff \| blob \| history
src/gromacs/swap/swapcoords.cpp		diff \| blob \| history
src/gromacs/tables/forcetable.cpp		diff \| blob \| history
src/programs/mdrun/md.cpp		diff \| blob \| history
src/programs/mdrun/mdrun.cpp		diff \| blob \| history
src/programs/mdrun/membed.cpp		diff \| blob \| history
src/programs/mdrun/repl_ex.cpp		diff \| blob \| history
src/programs/mdrun/runner.cpp		diff \| blob \| history

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