BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Teemu Murtola <teemu.murtola@gmail.com>
	Mon, 30 Nov 2015 10:52:22 +0000 (12:52 +0200)
committer	Teemu Murtola <teemu.murtola@gmail.com>
	Mon, 30 Nov 2015 10:52:22 +0000 (12:52 +0200)
commit	ca26ed983d1d628b0b7ccf603d9c7a68a4e8c91a
tree	676ffbf2f1b1aef44dd861734317984d2bbc27bf	tree \| snapshot
parent	ff7b861b8af08920bd2aae154aef15b7df1c5a8a	commit \| diff

Merge remaining legacyheaders/types/ to mdtypes/

One cyclic dependency suppressed for now.
legacyheaders/ is no more.

Closes #1415 (but this just moves us to the next phase of the clean-up)

Change-Id: Ie80d24d347acb61216002a309cb4118f8dc99b6b

297 files changed:

docs/doxygen/cycle-suppressions.txt		diff \| blob \| history
src/gromacs/domdec/domdec.cpp		diff \| blob \| history
src/gromacs/domdec/domdec.h		diff \| blob \| history
src/gromacs/domdec/domdec_box.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_constraints.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_internal.h		diff \| blob \| history
src/gromacs/domdec/domdec_setup.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_specatomcomm.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_specatomcomm.h		diff \| blob \| history
src/gromacs/domdec/domdec_topology.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_vsite.cpp		diff \| blob \| history
src/gromacs/domdec/ga2la.h		diff \| blob \| history
src/gromacs/domdec/hash.h		diff \| blob \| history
src/gromacs/essentialdynamics/edsam.cpp		diff \| blob \| history
src/gromacs/ewald/ewald.cpp		diff \| blob \| history
src/gromacs/ewald/ewald.h		diff \| blob \| history
src/gromacs/ewald/long-range-correction.cpp		diff \| blob \| history
src/gromacs/ewald/long-range-correction.h		diff \| blob \| history
src/gromacs/ewald/pme-load-balancing.cpp		diff \| blob \| history
src/gromacs/ewald/pme-load-balancing.h		diff \| blob \| history
src/gromacs/ewald/pme-only.cpp		diff \| blob \| history
src/gromacs/ewald/pme-pp.cpp		diff \| blob \| history
src/gromacs/ewald/pme-redistribute.cpp		diff \| blob \| history
src/gromacs/ewald/pme.cpp		diff \| blob \| history
src/gromacs/ewald/pme.h		diff \| blob \| history
src/gromacs/fileio/checkpoint.cpp		diff \| blob \| history
src/gromacs/fileio/filenm.cpp		diff \| blob \| history
src/gromacs/fileio/txtdump.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_disre.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_enemat.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_tune_pme.cpp		diff \| blob \| history
src/gromacs/gmxlib/disre.cpp		diff \| blob \| history
src/gromacs/gmxlib/gmx_detect_hardware.cpp		diff \| blob \| history
src/gromacs/gmxlib/gmx_omp_nthreads.cpp		diff \| blob \| history
src/gromacs/gmxlib/main.cpp		diff \| blob \| history
src/gromacs/gmxlib/md_logging.cpp		diff \| blob \| history
src/gromacs/gmxlib/network.cpp		diff \| blob \| history
src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp		diff \| blob \| history
src/gromacs/gmxlib/nonbonded/nb_kernel.h		diff \| blob \| history
src/gromacs/gmxlib/nonbonded/nonbonded.cpp		diff \| blob \| history
src/gromacs/gmxlib/nonbonded/nonbonded.h		diff \| blob \| history
src/gromacs/gmxlib/nrnb.cpp		diff \| blob \| history
src/gromacs/gmxlib/orires.cpp		diff \| blob \| history
src/gromacs/gmxlib/thread_affinity.cpp		diff \| blob \| history
src/gromacs/listed-forces/bonded.h		diff \| blob \| history
src/gromacs/listed-forces/listed-forces.cpp		diff \| blob \| history
src/gromacs/listed-forces/listed-internal.h		diff \| blob \| history
src/gromacs/listed-forces/manage-threading.h		diff \| blob \| history
src/gromacs/listed-forces/pairs.h		diff \| blob \| history
src/gromacs/listed-forces/position-restraints.cpp		diff \| blob \| history
src/gromacs/mdlib/broadcaststructs.cpp		diff \| blob \| history
src/gromacs/mdlib/clincs.cpp		diff \| blob \| history
src/gromacs/mdlib/constr.cpp		diff \| blob \| history
src/gromacs/mdlib/coupling.cpp		diff \| blob \| history
src/gromacs/mdlib/force.cpp		diff \| blob \| history
src/gromacs/mdlib/force.h		diff \| blob \| history
src/gromacs/mdlib/forcerec.cpp		diff \| blob \| history
src/gromacs/mdlib/forcerec.h		diff \| blob \| history
src/gromacs/mdlib/genborn.cpp		diff \| blob \| history
src/gromacs/mdlib/genborn_allvsall.cpp		diff \| blob \| history
src/gromacs/mdlib/groupcoord.cpp		diff \| blob \| history
src/gromacs/mdlib/integrator.h		diff \| blob \| history
src/gromacs/mdlib/md_support.cpp		diff \| blob \| history
src/gromacs/mdlib/mdebin.cpp		diff \| blob \| history
src/gromacs/mdlib/mdebin.h		diff \| blob \| history
src/gromacs/mdlib/mdoutf.cpp		diff \| blob \| history
src/gromacs/mdlib/mdrun_signalling.cpp		diff \| blob \| history
src/gromacs/mdlib/minimize.cpp		diff \| blob \| history
src/gromacs/mdlib/nbnxn_cuda/nbnxn_cuda_data_mgmt.cu		diff \| blob \| history
src/gromacs/mdlib/nbnxn_cuda/nbnxn_cuda_types.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_gpu_data_mgmt.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_file_generator/nbnxn_kernel_simd_2xnn_kernel.cpp.pre		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_file_generator/nbnxn_kernel_simd_4xn_kernel.cpp.pre		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_file_generator/nbnxn_kernel_simd_template.cpp.pre		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_file_generator/nbnxn_kernel_simd_template.h.pre		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_x86_simd128.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_x86_simd256.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp		diff \| blob \| history
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src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp		diff \| blob \| history
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src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp		diff \| blob \| history
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src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp		diff \| blob \| history
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src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp		diff \| blob \| history
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