Move disre.* and orires.* to listed-forces/
authorTeemu Murtola <teemu.murtola@gmail.com>
Fri, 11 Dec 2015 07:21:49 +0000 (09:21 +0200)
committerMark Abraham <mark.j.abraham@gmail.com>
Sat, 12 Dec 2015 04:32:05 +0000 (05:32 +0100)
commit07367d2a23115846e31eb37fc852c0911a82ba2b
treeb6e5fdac89d0474ff62db739f07bb3eaef527d5e
parent76628f4e12d8f4335586169f05ea6fb6b7f11623
Move disre.* and orires.* to listed-forces/

This removes topology -> gmxlib dependency, and moves code out of gmxlib
to a more appropriate location.

Convert existing comments to very rudimentary Doxygen documentation to
avoid Doxygen warnings.

Part of #1854.

Change-Id: I1aa56dd8f14eff90e035f1c69d59bb19a8dcb7ed
14 files changed:
docs/doxygen/cycle-suppressions.txt
src/gromacs/gmxana/gmx_disre.cpp
src/gromacs/gmxana/gmx_eneconv.cpp
src/gromacs/listed-forces/disre.cpp [moved from src/gromacs/gmxlib/disre.cpp with 100% similarity]
src/gromacs/listed-forces/disre.h [moved from src/gromacs/gmxlib/disre.h with 79% similarity]
src/gromacs/listed-forces/listed-forces.cpp
src/gromacs/listed-forces/orires.cpp [moved from src/gromacs/gmxlib/orires.cpp with 100% similarity]
src/gromacs/listed-forces/orires.h [moved from src/gromacs/gmxlib/orires.h with 78% similarity]
src/gromacs/mdlib/expanded.cpp
src/gromacs/mdlib/mdebin.cpp
src/gromacs/mdlib/sim_util.cpp
src/gromacs/mdlib/update.cpp
src/gromacs/topology/ifunc.cpp
src/programs/mdrun/runner.cpp