BioD PNPI Git Repos - alexxy/gromacs.git/commit - src/gromacs/gmxana/gmx

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Mark Abraham <mark.j.abraham@gmail.com>
	Wed, 11 Nov 2015 21:23:35 +0000 (22:23 +0100)
committer	Gerrit Code Review <gerrit@gerrit.gromacs.org>
	Sat, 12 Dec 2015 03:17:02 +0000 (04:17 +0100)
commit	5922c55f2bee75b57a9d2ce0a5cd9d38ff55702e
tree	204a88c38c83f88db9703b034c17b914f85719ab	tree \| snapshot
parent	fa14fefdbd310eb63a87a944d777aa38a1ea6bab	commit \| diff

Broke up copyright.*

Split unrelated content into binaryinformation.* and pleasecite.*, and
move them to utility/. This removes functionality from fileio that does
not really belong there, and helps in removing cyclic dependencies.

One new cyclic dependency suppressed for now; it will disappear with
simplification of gmx_invsqrt().

Part of #1415.

Change-Id: I65f07768d46852783d30cf1a28dd22d614dde125

50 files changed:

docs/doxygen/cycle-suppressions.txt		diff \| blob \| history
src/gromacs/commandline/cmdlinemodulemanager-impl.h		diff \| blob \| history
src/gromacs/fileio/matio.cpp		diff \| blob \| history
src/gromacs/fileio/xvgr.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_anadock.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_analyze.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_angle.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_densorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dielectric.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dipoles.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dos.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dyecoupl.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_energy.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_hbond.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_nmeig.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rms.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_sans.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_saxs.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_trjconv.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_wham.cpp		diff \| blob \| history
src/gromacs/gmxana/pp2shift.cpp		diff \| blob \| history
src/gromacs/gmxlib/disre.cpp		diff \| blob \| history
src/gromacs/gmxlib/main.cpp		diff \| blob \| history
src/gromacs/gmxlib/network.cpp		diff \| blob \| history
src/gromacs/gmxlib/orires.cpp		diff \| blob \| history
src/gromacs/gmxlib/readinp.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/pdb2top.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/x2top.cpp		diff \| blob \| history
src/gromacs/mdlib/clincs.cpp		diff \| blob \| history
src/gromacs/mdlib/constr.cpp		diff \| blob \| history
src/gromacs/mdlib/forcerec.cpp		diff \| blob \| history
src/gromacs/mdlib/mdoutf.cpp		diff \| blob \| history
src/gromacs/mdlib/rf_util.cpp		diff \| blob \| history
src/gromacs/mdlib/sim_util.cpp		diff \| blob \| history
src/gromacs/pulling/pull.cpp		diff \| blob \| history
src/gromacs/pulling/pull_rotation.cpp		diff \| blob \| history
src/gromacs/swap/swapcoords.cpp		diff \| blob \| history
src/gromacs/topology/atomprop.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/freevolume.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/sasa.cpp		diff \| blob \| history
src/gromacs/utility/CMakeLists.txt		diff \| blob \| history
src/gromacs/utility/binaryinformation.cpp	[new file with mode: 0644]	blob
src/gromacs/utility/binaryinformation.h	[moved from src/gromacs/fileio/copyrite.h with 93% similarity]	diff \| blob \| history
src/gromacs/utility/cuda_version_information.cu	[moved from src/gromacs/gmxlib/cuda_tools/copyrite_gpu.cu with 97% similarity]	diff \| blob \| history
src/gromacs/utility/cuda_version_information.h	[new file with mode: 0644]	blob
src/gromacs/utility/pleasecite.cpp	[moved from src/gromacs/fileio/copyrite.cpp with 62% similarity]	diff \| blob \| history
src/gromacs/utility/pleasecite.h	[new file with mode: 0644]	blob
src/programs/mdrun/repl_ex.cpp		diff \| blob \| history
src/programs/mdrun/runner.cpp		diff \| blob \| history

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